ID AJ245652; SV 1; circular; genomic DNA; STD; VRL; 2752 BP. XX AC AJ245652; XX DT 07-JAN-2000 (Rel. 62, Created) DT 14-NOV-2006 (Rel. 89, Last updated, Version 7) XX DE Watermelon chlorotic stunt virus-[IR] segment A, complete sequence, clone DE WmCSV-IR-A XX KW AC2 gene; AC3 gene; AC4 gene; AC5 gene; AV2 gene; capsid gene; KW capsid protein; rep gene; rep protein. XX OS Watermelon chlorotic stunt virus-[IR] OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2752 RA Kheyr-Pour A.; RT ; RL Submitted (04-AUG-1999) to the INSDC. RL Kheyr-Pour A., Institut des Sciences Vegetales, Centre National de la RL Recherche Scientifique, Avenue de la Terrasse, Gif sur Yvette 91198, RL France. XX RN [2] RX PUBMED; 18944543. RA Kheyr-Pour A., Bananej K., Dafalla G.A., Caciagli P., Noris E., RA Ahoonmanesh A., Lecoq H., Gronenborn B.; RT "Watermelon chlorotic stunt virus from the Sudan and Iran: Sequence RT Comparisons and Identification of a Whitefly-Transmission Determinant"; RL Phytopathology 90(6):629-635(2000). XX DR MD5; bd9d05ae83933a359696951d0d8283f5. DR EuropePMC; PMC3550763; 23637479. XX FH Key Location/Qualifiers FH FT source 1..2752 FT /organism="Watermelon chlorotic stunt virus-[IR]" FT /segment="A" FT /host="Citrullus vulgaris" FT /mol_type="genomic DNA" FT /clone="WmCSV-IR-A" FT /db_xref="taxon:223362" FT rep_origin 1 FT /direction=RIGHT FT /note="first base of viral (+) strand" FT stem_loop join(2734..2752,1..13) FT /standard_name="conserved hairpin" FT /function="circularization of ss-DNA during replication" FT /note="part of replication origin" FT misc_feature join(2746..2752,1..2) FT /standard_name="conserved nonanucleotide 'TAATATTAC'" FT /function="part of Rep origin recognition site" FT regulatory 119..126 FT /note="of virion sense transcription" FT /regulatory_class="TATA_box" FT CDS 155..514 FT /gene="AV2" FT /product="AV2 protein" FT /db_xref="GOA:Q9Q1R8" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:Q9Q1R8" FT /protein_id="CAB65501.1" FT /translation="MWDPLLNEFPESVHGFRCMLAVKYLQAVESTYEPNTLGHELIRDL FT ILVLRARDYGEANRRYSHFHSRFEGSSKTELRQPLHEPCSCPHCPRHKQASTMGQQAHV FT SKAQDVQDVSKPRCP" FT CDS complement(219..986) FT /gene="AC5" FT /product="AC5 protein" FT /db_xref="InterPro:IPR006892" FT /db_xref="InterPro:IPR013671" FT /db_xref="UniProtKB/TrEMBL:Q9Q1R7" FT /experiment="experimental evidence, no additional details FT recorded" FT /protein_id="CAB65502.1" FT /translation="MILILRSLLVVVDHMIVHTIEAFYQRLLLHPRGATDHGGMKLSHN FT LETIAKIVLNCRSAGLVVEHIKNLSEVHWTGPIWTTVTNKKEHDLIRMILFFNVLIHPD FT LAKNVYRLHTKPFSDTMSDSTPPSNITDTPDDTGVLNVVSLFVRLNFAWAFAALRDIWA FT SIHPVHPGLSIHGPVGPLSTLACDEDSGGKSTAHVGAVEVQFSTNLRNGSGNENISCSL FT RHNHGPGGQELDRGSIRGPKYWARRSIQRPAST" FT CDS 315..1091 FT /gene="capsid" FT /product="capsid protein" FT /db_xref="GOA:Q9PX93" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:Q9PX93" FT /protein_id="CAB65503.1" FT /translation="MAKRTGDILISTPVSKVRRKLNFDSPYMSRALAPTVLVTSKRRQW FT ANRPMYRKPRMYRMYRSPDVPKGCEGPCKVQSYEQRDDVKHTGIVRCVSDVTRGSGITH FT RVGKRFCVKSIYILGKIWMDENIKKQNHTNQVMFFLVRDRRPYGSSPMDFGQVFNMFDN FT EPSTATVKNDLRDRFQVMRKFHATVVGGPSGMKEQALVKRFYRVYNHVVYNHQETAKYE FT NHTENAMLLYMACTHASNPVYATLKIRIYFYDSVTN" FT CDS complement(1088..1492) FT /gene="AC3" FT /product="AC3 protein" FT /db_xref="GOA:Q9Q1R6" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:Q9Q1R6" FT /protein_id="CAB65504.1" FT /translation="MDSRTGEYITADQAWNGVFTWTINNPLYFTIPDHHQRPFLCRHDI FT INMQIRFNHNLRRALGIHKAFLNFRIWTTLRPQTGRFLRVFRTQVLKYLDMLGVISLNL FT VVRAVSHVLENVLVGTIDVQENHVIKFDIY" FT regulatory 1090..1095 FT /note="of virion sense transcription" FT /regulatory_class="polyA_signal_sequence" FT regulatory complement(1103..1109) FT /note="of complementary sense transcription" FT /regulatory_class="polyA_signal_sequence" FT CDS complement(1233..1640) FT /gene="AC2" FT /product="AC2 protein" FT /db_xref="GOA:Q9Q1R5" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:Q9Q1R5" FT /protein_id="CAB65505.1" FT /translation="MPNSSSSQNLSSQPSIKIKHRLAKKKTIRRRRVDLKCGCSYYLHI FT SCQNHGFSHRGIHYCGSSMEWRVYLDDKQPPIFHDTRPPPTPLSLPSRHNKHANTIQPQ FT PSEGVGDSQSFPELPNLDDFTASDWSFLKGI" FT CDS complement(1540..2625) FT /gene="Rep" FT /product="Rep protein" FT /db_xref="GOA:Q9Q1R4" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:Q9Q1R4" FT /protein_id="CAB65506.1" FT /translation="MRPPRFRIQAKNIFLTYPRCSLSKEELLSFLVGLSLPSNLKYVKV FT CRELHQNGEPHLHVLLQFAGKITITDNRLFDHVHPSRSACFHPNIQSAKSSTDVKSYLD FT KDGDTVEWGKFQIDGRSARGGQQTANDAYATALNMSNKGEAMSVIKELAPKDFVLHYHN FT IKSNLDRIFEEPVAPFVCPFPMSSFTLLPPELVEWASTNVCSSAARPWRPKSIVVEGES FT RTGKTMWARSLGPHNYLCGHLDLSPKIYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQ FT SNTKYGKPIQIKGGIPTIFLCNPGPSSSYKEFLEEEKNYALKEWADKNAEFVFLSEPLF FT SAEHQDQTQTRQKEDDSATTR" FT CDS complement(2328..2471) FT /gene="AC4" FT /product="AC4" FT /db_xref="UniProtKB/TrEMBL:Q9PX67" FT /protein_id="CAB65507.1" FT /translation="MGNLISMCSCSSPERSPSQTIASSIMYTQAVAPVSTPTYKALSPV FT QT" FT regulatory complement(2691..2696) FT /gene="Rep" FT /regulatory_class="TATA_box" XX SQ Sequence 2752 BP; 703 A; 624 C; 688 G; 737 T; 0 other; accggatgcc cgcggagcca aaaagtgacc ccacaggaca cgtgcaccaa tgaaattgcg 60 tgctttgagg taagttagct ggaaatggag ttttgaaagc gacaagtcat acgagtcgta 120 tttatactgc tgctgcggat caacttttgt caggatgtgg gatccattgc ttaatgaatt 180 tcccgagtcg gttcacggct ttcggtgtat gctagctgtc aagtacttgc aggccgttga 240 atcgacctac gagcccaata ctttgggcca cgaattgatc cgcgatctaa ttcttgtcct 300 ccgggcccgt gattatggcg aagcgaacag gagatattct catttccact cccgtttcga 360 aggttcgtcg aaaactgaac ttcgacagcc cctacatgag ccgtgctctt gcccccactg 420 tcctcgtcac aagcaagcgt cgacaatggg ccaacaggcc catgtatcga aagcccagga 480 tgtacaggat gtatcgaagc ccagatgtcc ctaagggctg cgaaggccca tgcaaagttc 540 agtcgtacga acaacgagac gacgttaagc acaccggtat cgtccggtgt gtcagtgatg 600 ttactagggg gagtggaatc actcatcgtg tcggaaaaag gttttgtgtg aagtctatat 660 acattcttgg caagatctgg atggatgaga acattaaaaa acaaaatcat acgaatcagg 720 tcatgttctt tcttgttcgt gaccgtcgtc catatgggtc cagtccaatg gacttcggac 780 aggtttttaa tatgttcgac aacgagccca gcactgcgac agttaagaac gatcttcgcg 840 atcgtttcca agttatgcga aagtttcatg ccaccgtggt cggtggcccc tctgggatga 900 aggagcaggc gctggtaaaa cgcttctatc gtgtgtacaa tcatgtggtc tacaaccacc 960 aagagactgc gaagtatgag aatcatactg agaatgcgat gttattgtat atggcgtgta 1020 cacacgcatc gaatcctgtg tatgcaacat tgaaaattcg gatatatttt tatgactcag 1080 ttacgaatta ataaatatcg aattttatta cgtgattttc ttgtacatcg attgtcccaa 1140 caaggacatt ttccaataca tgacttacgg ccctaacaac caaattgaga ctaattacac 1200 ctaacatgtc gaggtatttt agaacctgcg ttctaaatac ccttaagaaa cgaccagtct 1260 gaggccgtaa agtcgtccag attcggaagt tcaggaaagc tttgtgaatc cccaacgccc 1320 tccgaaggtt gtggttgaat cgtatttgca tgtttattat gtcgtgacgg caaagaaagg 1380 ggcgttggtg gtggtctggt atcgtgaaat atagggggtt gtttatcgtc caggtaaaca 1440 cgccattcca tgcttgatcc gcagtaatgt attccccggt gcgagaatcc atgattctgg 1500 cacgagatat gcaggtaata tgagcaaccg cactttagat caacgcgtcg tcgccgaatc 1560 gtcttctttt tggcgagtct gtgtttgatc ttgatgctcg gctgagaaga gaggttctga 1620 gaggaagacg aattcggcat tcttatccgc ccactctttt agtgcatagt tcttctcctc 1680 ctctagaaac tctttatacg aagaagatgg gcccggattg caaaggaaga tagtgggaat 1740 tccgccttta atttgaatcg gctttccgta tttcgtgttg ctttgccaat cacgctgggc 1800 ccccatgaac tctttaaagt gctttagata atgcgggtcg acgtcatcaa tgacgttgta 1860 ccacgcatcg ttgctgtaga tctttggact caggtcaagg tgaccacata ggtaattatg 1920 tggtcctaat gatcgggccc acatcgtctt tcccgtacga ctctcaccct ctaccacgat 1980 actcttgggt ctccacggcc gcgcagcgga agagcaaacg ttcgttgatg cccactcaac 2040 gagctcaggc ggtagcaacg tgaaagacga catcggaaaa ggacaaacga aaggagccac 2100 aggttcttca aagattcgat ccaaatttga cttgatattg tggtagtgaa ggacgaagtc 2160 cttcggtgcg agctccttga tcacagacat agcctcccct ttattactca tgttaagcgc 2220 cgtggcgtag gcgtcgttag ctgtctgttg tccacccctt gcagatcgac cgtcgatttg 2280 aaacttgccc cactcgacgg tgtcgccgtc cttgtccagg taagacttca cgtctgtact 2340 ggacttagcg ctttgtatgt tggggtggaa acaggcgcta cggcttgggt gtacatgatc 2400 gaagaggcga ttgtctgtga tggtgatctt tccggcgaac tgcaggagca catggagatg 2460 aggttcccca ttctggtgca gttctctgca caccttgacg tattttaagt tcgacggaag 2520 ggagaggccg actaaaaagg aaagtagctc ttctttggag agagagcacc tgggatatgt 2580 gaggaaaatg ttttttgctt gtattctaaa acggggaggc ctcatgttga ccagtcaatt 2640 ggagacaccc cccagatcac taacccctgt atattggaga ctggagacaa tatatagaag 2700 tagtaagagg tactactagg attttgacac gtagcgggca tcctataata tt 2752 //