ID AJ225173; SV 1; linear; mRNA; STD; VRL; 7055 BP. XX AC AJ225173; XX DT 02-DEC-1998 (Rel. 57, Created) DT 15-APR-2005 (Rel. 83, Last updated, Version 3) XX DE avian encephalomyelitis virus mRNA for polyprotein XX KW polyprotein. XX OS Tremovirus A OC Viruses; Riboviria; Picornavirales; Picornaviridae; Tremovirus. XX RN [1] RA Marvil P., Knowles N.J., Mockett A.P.A., Britton P., Brown T.D.K., RA Cavanagh D.; RT "Avian encephalomyelitis virus is a picornavirus and is most closely RT related to hepatitis A virus"; RL J. Gen. Virol. 80:653-662(1999). XX RN [2] RP 1-7055 RA Britton P.; RT ; RL Submitted (17-DEC-1997) to the INSDC. RL Molecular Biology, Institute for Animal Health, Compton Laboratory, RL Compton, Newbury, Berkshire RG20 7EN, United Kingdom. XX DR MD5; 24204740d006f05a68c11b3a6a873a40. DR EuropePMC; PMC114071; 11160660. DR EuropePMC; PMC114636; 11581430. DR EuropePMC; PMC137002; 12163611. DR EuropePMC; PMC1900287; 17392358. DR EuropePMC; PMC1933019; 17460053. DR EuropePMC; PMC2224395; 17942560. DR EuropePMC; PMC2258716; 18077729. DR EuropePMC; PMC2566277; 18684812. DR EuropePMC; PMC4376133; 25726971. DR EuropePMC; PMC5511752; 14596594. DR EuropePMC; PMC6178082; 29460117. DR EuropePMC; PMC6361656; 30464075. XX FH Key Location/Qualifiers FH FT source 1..7055 FT /organism="Tremovirus A" FT /strain="Calnek" FT /mol_type="mRNA" FT /note="vaccine strain" FT /db_xref="taxon:70796" FT CDS 495..6899 FT /codon_start=1 FT /product="aev polyprotein" FT /db_xref="GOA:Q9YLS4" FT /db_xref="InterPro:IPR000199" FT /db_xref="InterPro:IPR000605" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR001676" FT /db_xref="InterPro:IPR007053" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR014759" FT /db_xref="InterPro:IPR024354" FT /db_xref="InterPro:IPR027417" FT /db_xref="InterPro:IPR029053" FT /db_xref="InterPro:IPR033703" FT /db_xref="UniProtKB/Swiss-Prot:Q9YLS4" FT /protein_id="CAA12416.1" FT /translation="MSKLFSTVGKTVDEVLSVLNDENTESYAGPDRTAVVGGGFLTTVD FT QSSVSTATMGSLQDVQYRTAVDIPGSRVTQGERFFLIDQREWNSTQSEWQLLGKIDIVK FT ELLDQSYAVDGLLKYHSYARFGLDVIVQINPTSFQAGGLIAALVPYDQVDIESIAAMTT FT YCHGKLNCNINNVVRMKVPYIYSRGCYNLRNSAYSIWMLVIRVWSQLQLGSGTSTQITV FT TTLARFVDLELHGLSPLVAQMMRNEFRLSSSSNIVNLANYEDARAKVSLALGQEEFSRD FT SSSTGGELLHHFSQWTSIPCLAFTFTFPGTVGPGTQIWSTTVDPFSCNLRASSTVHPTN FT LSSIAGMFCFWRGDIVFEFQVFCTKYHSGRLMFVYVPGDENTKISTLTAKQASSGLTAV FT FDINGVNSTLVFRCPFISDTPYRVNPTTHKSLWPYATGKLVCYVYNRLNAPASVSPSVS FT INVYKSAVDLELYAPVYGVSPTNTSVFAQGKEDEGGFSSVPEVEQHVVEDKEPQGPLHV FT TPFGAVKAMEDPQLARKTPGTFPELAPGKPRHTVDHMDLYKFMGRAHYLWGHKFTKTDM FT QYTFQIPLSPIKEGFVTGTLRWFLSLFQLYRGSLDITMTFAGKTNVDGIVYFVPEGVAI FT ETEREEQTPLLTLNYKTSVGAIRFNTGQTTNVQFRIPFYTPLEHIATHSKNAMDSVLGA FT ITTQITNYSAQDEYLQVTYYISFNEDSQFSVPRAVPVVSSFTDTSSKTVMNTYWLDDDE FT LVEESSHSSFDEIEEAQCSKCKMDLGDIVSCSGEKAKHFGVYVGDGVVHVDPEGNATNW FT FMKRKATVKKSKNLDKWCFALSPRIDRTLICETANLMVGREVEYDIFVKNCETYARGIA FT SGDYGTKEGEKWKTLLSAVGVAAMTTTMMAMRHELLDTSLTKLPQKVGEVTNEVRKILE FT DTSAGVREFKEKVSSILRKTWPGKTSIKIMKWTCRIVKMCVGVGLCYAHGWDSKTVTAV FT VTMFSMDFLDLVIDGIEIGRMIIDELTTPKAQGLSEINQVLSIAKNAKDVIKMLIEIFC FT KVIERITGEHGKKIQWAQDKKEEIMNVLERAEKWITTSDDHSEGIECLKLVRSIQSVIR FT GEESLKELAGELRAVGTHVLNKLGRLDKPNAPILVRAEPTVLYLYGNRGGGKSLASMAI FT AVKLCKELGISHVEGIYTKPIMSDFWDGYAGQPVVIMDDLGQSTSDEDWTNFCQLVSSC FT PLRLNMANLEKKGTQFNSPFIIASSNLSHPCPKTVYCTDAIARRLHIKVKVSPKEEFST FT HAMLDVAKAKKAGAYCNLDCLDFQKISDLASTPVSVQDIVLEMLHTNVDKQTLMGDIIQ FT YWAQSNPREVFDTMAEGKNSGKYLWLFEKIKTSKWYILGCVGAVLSVSVLGVFAYHMIK FT NHFRDQQHDQSAYSAAIKPLRVVRLEQSDAQSVVDISNVVHGNLVRVGVGPNEARIHWL FT YNGLGVYDTYILMPYHGIKDADVDDDLYIERAGTIYSTNMKMVQVLFLESREGDLVLIN FT VPRLPKFRDIRNHFSTEENIRRAEGMPGTLCTLDHERFTLVTESDLKMVEAATYVCEDD FT KGVRTDISVGRSWKAKACTVAGMCGGALVTSNNKMQNAIVGIHVAGGAHAISRVITKEM FT IEEMLKTRAQCSRIWKTEFVEEKISVGSKTKYHKSPLYDFCPQEVIKCPTKLFYQGEID FT VMQVMLAKYSSPIVSEPLGYATVVEAYTNRMVSFFSEPRQLTYDECINGIEGLDAIDLK FT TSAGFPYNTLGLRKSDLIINGKMAQRLQQDVEKMEEDLHMNRSIQVVFTTCAKDELRPL FT SKVMLGKTRAIEACPVSFTILFRRYLGYALAQIQSHPGFHTGIAVGVDPDQDWHCMWYS FT IVTQCDLVVGLDFSNYDASLSPFMIYHAGRVLGQICGLDPRLVDRIMEPIVNSVHQLGS FT MRYYVHGSMPSGTPATSVLNSIINVVNICHVLCALEKISVFEVFKLFKILTYGDDVLLC FT IKKEYLDQKSFPLSSFVQGLEELGLSPTGADKMEVKVTPVHKMSFLKRTFYVDEWSICH FT PRISEETVYSMLAWKSDNASMKDLIETSIWFMFHHGPRKYVRFCTWLRGVLCRVGIGLY FT IPTYKELEVRYDRLVKYRFIDDSF" XX SQ Sequence 7055 BP; 1904 A; 1343 C; 1813 G; 1995 T; 0 other; tttgaaagag gcctccggag tgtccggagg ctctctttcg acccaaccca tactgggggg 60 tgtgtgggac cgtacctgga gtgcacggta tatatgcatt cccgcatggc aagggcgtgc 120 taccttgccc cttgacgcat ggtatgcgtc atcatttgcc ttggttaagc cccatagaaa 180 cgaggcgtca cgtgccgaaa atccctttgc gtttcacaga accatcctaa ccatgggtgt 240 agtatgggaa tcgtgtatgg ggatgattag gatctctcgt agagggatag gtgtgccatt 300 caaatccagg gagtactctg gctctgacat tgggacattt gatgtaaccg gacctggttc 360 agtatccggg ttgtcctgta ttgttacggt gtatccgtct tggcacactg aaagggtatt 420 tttgggtaat cctttcctac tgcctgatag ggtggcgtgc ccggccacga gagattaagg 480 gtagcaattt aaacatgagc aaactatttt ctactgtagg caagactgtt gatgaggttt 540 tgtctgtgct taacgatgag aatactgaat cttatgctgg ccctgatcgt actgcagtag 600 ttggcggagg atttctgaca acggtagacc agagttcagt tagtacggct acaatgggaa 660 gtttacagga tgtacagtac agaactgcag tcgacatccc tggttctaga gtgacacaag 720 gtgagaggtt tttccttatt gatcagcgtg agtggaactc aacacagagt gaatggcagt 780 tattgggcaa gattgacata gtaaaagagt tgcttgatca gtcatatgct gttgatggcc 840 ttttgaaata ccattcttat gcgaggtttg gcttggacgt cattgttcag attaatccaa 900 catcattcca ggcagggggt ctcatagcag cccttgtacc ttatgaccag gttgatattg 960 aatcaattgc tgccatgact acttattgcc atggcaagtt gaattgcaac ataaacaacg 1020 ttgtaagaat gaaggtgcca tacatataca gtcgaggttg ttacaacctt aggaactcag 1080 catactccat ttggatgctt gtaataagag tgtggtcaca gctgcagttg ggatccggca 1140 cttcaacaca gattactgtc accaccttgg ctaggtttgt ggatttggaa ctacatggac 1200 ttagcccttt ggtcgcacag atgatgcgca acgaatttcg actgtcgtca tctagcaaca 1260 ttgtcaattt ggctaattat gaggatgcaa gagccaaagt gtctctagcg ctgggacaag 1320 aagagttttc cagagactcg tcaagtaccg ggggggaatt gttgcatcat ttttcacagt 1380 ggacgtcgat tccgtgcctt gccttcactt ttacattccc cggcacggta gggccaggca 1440 ctcagatctg gtcaaccacg gtggaccctt tttcctgtaa cttgagggcg tctagcactg 1500 tgcaccccac taacttgagc tcgattgcgg gtatgttctg tttttggaga ggtgacattg 1560 tatttgagtt tcaagtcttt tgcaccaagt atcattccgg caggttgatg tttgtgtatg 1620 tgcctggcga tgaaaacaca aaaatcagca ccttaactgc aaaacaagca tctagtggtc 1680 ttactgctgt ttttgatatc aatggtgtaa attcaacact ggtgtttaga tgccctttca 1740 tctctgacac accttacagg gtgaatccaa cgactcataa gtccctctgg ccttatgcaa 1800 ctggcaagct tgtgtgctat gtgtacaata gactgaacgc acctgccagt gtatcaccaa 1860 gcgtgtccat taatgtgtac aaaagtgctg tggatctgga gttgtatgca cctgtttatg 1920 gggtttctcc caccaacacc tcagtttttg ctcaagggaa agaggatgaa ggaggatttt 1980 ccagtgtgcc tgaagtggag caacatgttg ttgaggataa ggaaccacag ggacctttgc 2040 acgtgacacc ttttggcgct gttaaagcta tggaggaccc ccaattggcc aggaaaacac 2100 ctggcacatt ccctgaatta gctcctggta aacctcgaca tacagtggac cacatggatc 2160 tgtataagtt catggggcgt gcccattact tgtggggaca taaattcacc aaaactgaca 2220 tgcagtacac attccagata ccattaagtc ccattaaaga gggttttgtg acgggtacac 2280 ttaggtggtt tttaagtctt ttccaactgt atcgtggttc tctcgacatt accatgacat 2340 ttgcaggaaa aactaatgtg gatggcattg tgtactttgt gcctgagggt gttgcgatag 2400 agactgagag ggaggagcag acccctttgc tcacattgaa ctataaaaca tcggtaggtg 2460 ccattaggtt taatactgga caaactacga atgtccagtt taggatccct ttctacacgc 2520 cactggaaca catcgcaacc cattctaaaa atgcgatgga ttcagtcttg ggggcaatca 2580 caacccagat cactaactat agtgctcagg atgagtattt gcaggttacc tactacatca 2640 gtttcaatga agattcacag ttttctgttc ccagagcggt gccagtggtc agctcattca 2700 ctgacacatc tagcaaaaca gtgatgaata catattggct tgatgatgac gagttggtag 2760 aagagtcctc ccattctagt ttcgacgaaa ttgaggaggc ccaatgttcg aaatgtaaaa 2820 tggatttggg ggacattgtg agctgtagtg gagagaaggc aaaacacttt ggtgtgtatg 2880 ttggagatgg tgttgtacat gtggatccag aaggcaatgc cactaactgg tttatgaagc 2940 gaaaagctac agtcaagaag agcaaaaatc tggacaaatg gtgctttgcc ttgtctccac 3000 gcatagatag gacactcata tgtgagacag ccaacctgat ggtgggacgc gaggttgagt 3060 atgatatctt tgtgaagaat tgtgagacat atgctcgggg tattgcatca ggcgactatg 3120 ggacaaaaga aggagaaaaa tggaagacct tactttctgc tgtgggtgta gccgccatga 3180 ccacaacgat gatggctatg agacacgaat tattggacac atcgctcacc aaattgccac 3240 aaaaagttgg ggaagttacc aatgaggtac gcaagattct tgaggatacg agtgcaggtg 3300 ttagagagtt taaggaaaaa gtctctagca tactcaggaa gacttggccc gggaagacat 3360 caataaaaat aatgaagtgg acttgcagga ttgtgaagat gtgtgttggt gtgggtctgt 3420 gctacgcaca tggatgggac tcaaagactg tgactgctgt ggtcacaatg ttttccatgg 3480 attttcttga tttggtgata gacggtatag agatagggcg catgataatt gatgagctca 3540 caaccccaaa agctcaagga ctttctgaga taaaccaagt cttgtccatt gcaaaaaatg 3600 ccaaagacgt catcaagatg ttgatagaga ttttctgtaa agttattgaa aggatcactg 3660 gtgaacatgg taagaaaatc cagtgggccc aggacaagaa ggaggaaatc atgaatgtct 3720 tggagagagc tgaaaagtgg attacaacta gtgatgacca ttcagagggt attgagtgct 3780 tgaagttagt taggtcaata cagtcagtca ttaggggtga agaatctctt aaagaattgg 3840 caggtgagtt gcgtgctgtt ggtacgcatg ttctgaataa gttgggtaga ctagacaaac 3900 caaatgcgcc tattttagtc agggctgagc ccacggtttt gtatctttat ggcaacagag 3960 gagggggtaa gagtttggct tcaatggcga ttgctgtgaa attgtgcaag gagttaggaa 4020 tctcgcatgt ggaaggcatt tacacgaaac ccatcatgtc ggacttctgg gatggatatg 4080 ctggtcagcc agtagtgata atggatgact taggacaatc tacatcagat gaagattgga 4140 caaatttttg ccagttggtg tcctcctgcc ctttacggtt aaatatggcc aatttggaga 4200 agaaagggac acagttcaac tcaccattca ttatagcatc ttctaatctt tcccatcctt 4260 gtccgaagac agtgtactgt acagatgcca tcgctaggag gttgcatatt aaggtcaagg 4320 ttagcccgaa agaagaattc tctactcatg ccatgcttga cgtggcaaag gccaagaaag 4380 caggtgctta ttgcaacctt gactgtttgg acttccagaa gatcagtgac ctcgcatcca 4440 caccagttag tgtccaagat atagtgctgg agatgttgca taccaatgtt gacaagcaaa 4500 ccctgatggg ggacatcata cagtattggg cgcagtccaa ccctcgagag gtttttgaca 4560 caatggctga gggaaagaat tctggtaaat atttatggtt gtttgagaaa atcaagacat 4620 ctaaatggta tatattagga tgtgtgggag cagttctatc agtgtctgtc ttgggtgtgt 4680 ttgcgtatca catgattaaa aaccatttca gagatcaaca acatgatcag tctgcttact 4740 ctgccgcgat caagcccctt agagttgttc gcttagaaca atcagatgcg caatcagttg 4800 tggatatatc caatgtggtg catggcaatc tggttagagt gggagtaggg cctaatgaag 4860 ctaggattca ctggttgtat aatggtttgg gtgtttatga cacctatatt ctgatgccat 4920 atcatggcat aaaagatgct gatgttgatg atgatctata cattgagaga gcagggacca 4980 tttactcgac caacatgaag atggtccaag ttttgttctt ggagtcccgt gaaggtgatc 5040 tggtgttgat aaatgtccct cgtttgccta aatttaggga catacgcaat cacttttcta 5100 ctgaggagaa catacgcagg gcagaaggca tgccagggac tttgtgcact ttggaccatg 5160 agaggttcac ccttgttact gagagcgacc ttaagatggt ggaggcagct acatatgtct 5220 gcgaagatga caagggtgtg cgcactgata ttagtgttgg gcgcagttgg aaggcgaagg 5280 cttgtacggt cgcagggatg tgtggtggtg ccttggtcac ttctaacaac aaaatgcaga 5340 atgcgattgt aggtattcat gttgctggag gggcgcacgc aatttctaga gtgatcacaa 5400 aagagatgat agaggagatg ctcaagacac gagcacaatg tagtaggata tggaagactg 5460 agtttgtgga agagaagata tctgtggggt ctaaaacgaa gtaccacaag tcccctttat 5520 atgatttttg tccacaggag gttattaaat gtcccactaa gttgttctat caaggagaaa 5580 ttgatgttat gcaagtcatg ttggccaaat attcgtctcc gattgttagt gagcccttag 5640 ggtacgccac cgtcgtggag gcttatacca accgtatggt cagtttcttt tctgagcctc 5700 gtcagttgac ctatgacgag tgcataaatg gtattgaagg tcttgatgct atagatttga 5760 agacgtcagc tggctttccg tacaacactc taggtctcag gaagagtgat ttgatcatta 5820 atggcaagat ggcacaacgt ctgcagcagg acgtcgagaa gatggaagaa gacttgcaca 5880 tgaatcgatc cattcaagtg gtatttacca cgtgtgccaa agacgaattg cgtcctctaa 5940 gtaaggttat gctgggcaag accagagcca tagaggcttg ccccgtttcg ttcaccatcc 6000 tatttcgcag gtatttggga tacgctttgg cgcagattca gagccaccct ggttttcaca 6060 cagggatagc agtgggcgtg gaccctgacc aagattggca ctgtatgtgg tacagtattg 6120 ttactcaatg cgaccttgtt gttggtcttg acttttccaa ctatgatgct agtctgtccc 6180 cgtttatgat ataccatgct gggagggttc tgggccaaat ttgtggtttg gacccaaggt 6240 tggtggatag aataatggag cctattgtta attccgttca tcagttgggc tccatgagat 6300 actatgtcca tggttctatg ccatctggca cacctgctac atcggtgctc aattctataa 6360 ttaatgttgt gaacatctgc catgtgttgt gtgcattgga gaaaataagt gtatttgagg 6420 ttttcaaatt attcaagatc ctcacttatg gcgatgacgt attactttgt ataaagaagg 6480 agtacctaga ccagaagagt ttcccgctat ctagttttgt tcaggggctg gaagagctgg 6540 gactgagccc cactggtgct gataagatgg aagtcaaggt cacgccagtg cataagatga 6600 gtttcctaaa gagaacattc tatgtggatg agtggtccat ctgtcatccg cgtatttctg 6660 aggagactgt ttattcgatg ctggcttgga agagcgacaa tgcatccatg aaggatctga 6720 tagaaacgag tatatggttt atgttccatc atggcccccg gaagtatgtt agattctgta 6780 cttggctgcg cggtgttctg tgccgtgtgg gtattgggct ctacattcca acttacaaag 6840 agctggaggt gaggtatgat aggcttgtca agtataggtt catagatgat agcttttaga 6900 ttttacatat ttgagtttcc atttctgtgt agttttagtg agtataggag cttatgtatg 6960 tttaaatgat aggtttgttt tagatttttc atttatcctt gaatttttaa tcatagtgtg 7020 attatagcat tcaaaaaaaa aaaaaaaaaa aaaaa 7055 //