ID AJ002475; SV 1; linear; genomic RNA; STD; VRL; 2245 BP. XX AC AJ002475; XX DT 03-MAR-1998 (Rel. 54, Created) DT 04-OCT-2005 (Rel. 85, Last updated, Version 6) XX DE Infectious salmon anemia virus genomic RNA for putative polymerase (PB1) DE protein XX KW PB1 gene; polymerase. XX OS Salmon isavirus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes; OC Articulavirales; Orthomyxoviridae; Isavirus. XX RN [1] RC revised bu [3] RA Krossoey B.; RT ; RL Submitted (07-NOV-1997) to the INSDC. RL Krossoey B., Department of Fisheries and Marine Biology, Fish Health, RL Bergen High Technology Center, 5020 Bergen, NORWAY. XX RN [2] RX PUBMED; 9971796. RA Krossoey B., Hordvik I., Nilsen F., Nylund A., Endresen C.; RT "The putative polymerase sequence of infectious salmon anemia virus RT suggests a new genus within the Orthomyxoviridae"; RL J. Virol. 73(3):2136-2142(1999). XX RN [3] RP 1-2245 RA Krossoey B.; RT ; RL Submitted (27-OCT-1998) to the INSDC. RL Krossoey B., Department of Fisheries and Marine Biology, Fish Health , RL Bergen High Technology Center, 5020 Bergen, NORWAY. XX DR MD5; a1119a1a309b53d67cec5e54edb6687e. DR EuropePMC; PMC104458; 9971796. DR EuropePMC; PMC3003268; 21092282. XX FH Key Location/Qualifiers FH FT source 1..2245 FT /organism="Salmon isavirus" FT /isolate="Sotra 92/93" FT /mol_type="genomic RNA" FT /db_xref="taxon:55987" FT CDS 37..2163 FT /gene="PB1" FT /function="polymerase" FT /db_xref="GOA:O56960" FT /db_xref="InterPro:IPR001407" FT /db_xref="InterPro:IPR007099" FT /db_xref="UniProtKB/TrEMBL:O56960" FT /protein_id="CAA05486.1" FT /translation="METLVGGLLTGEDSLVSMSNDVSCLYVYDGPMRVFSQNALMPTLQ FT SVKRSDQFSKGKTKRFIIDLFGMKRMWDIGNKHLEDENLDETVGVADLGLVKYLINNKY FT DEAEKTSLRKPMEEAFEKSMNEEFVVLNKGKSANDIISDTNAVCKFCVKNWIVATGFRG FT RTMSDLIEHHFRCMQGKQEVKGYIWKHKYNERLKRKQLSKEEVKFDREEYTSRSFRLLS FT FLKNSERTKLEPRAVFTAGVPWRAFIFVLEQTMLVVNKLDPNSVIWMGSDAKINTTNSR FT IKEIGMKNQGQTLVTLTGDNSKYNESMCPEVMMIFLRELGIKGPMLEVLDYALWQFSQK FT SVKPVAPIKKRTSRSTVVVKADAVNECRDAFNEKELELIQGVEWMEHGFIRVRRGMLMG FT MANNAFTTASTIASSFSFTPEAVYTLQSSDDFVTGSCGRDVQHARQRLEMALKVSKAAG FT LNVSQKKSFYVEGTTFEFNSMFVRDGKVMANGGNFENITVPGGLGPSTDLFVVGKQARN FT SMLRGNLSFSQAMEMCKIGITNVEKVYYGNRKYQELKNEIREKCGEETMSIPESMGGDR FT KPKPWELPQSFDGIALKEAVNRGHWKAAKYIKSCCSIEFDEEGDQSWDTSKTALVVIRK FT NETDMRRRTVKTRNPKDKIFNDAMNKAKRMYETVVDRNPLLGLKGKGGRLTVKDLKARK FT LIDEVEVIKKKKHV" XX SQ Sequence 2245 BP; 791 A; 379 C; 572 G; 503 T; 0 other; gaatgtaact atagcaaaga acgctcttta ataaccatgg aaactctagt aggtgggctg 60 ctgactgggg aagattctct ggtcagtatg tcgaatgatg tgtcttgtct ttacgtttat 120 gatggaccaa tgagggtttt ttcacaaaac gcactaatgc ctacgttgca aagtgtgaag 180 agaagtgacc agttctcaaa agggaaaaca aagagattta ttatagattt gtttggaatg 240 aaaaggatgt gggacatagg gaacaaacac ctagaagatg aaaatttgga cgaaactgtt 300 ggtgttgcag acttaggcct tgtgaaatac ctgataaaca acaagtacga tgaggcagag 360 aaaactagct taaggaagcc aatggaagaa gctttcgaga agtctatgaa cgaagaattt 420 gtcgtactga acaaagggaa atcagccaat gacattatct ccgacacaaa cgccgtgtgt 480 aaattctgcg ttaaaaactg gatagtagca acaggtttca gaggaagaac catgtcagac 540 ctgattgaac accatttcag gtgtatgcag gggaaacaag aagtgaaagg atacatatgg 600 aaacataaat acaacgagag acttaagaga aaacaactaa gcaaagaaga agttaagttc 660 gacagagagg aatacacctc gagaagcttc agactacttt cattcctgaa aaacagcgaa 720 agaactaagc tggagccgag agcagtgttc acagctggag taccttggag ggctttcatc 780 ttcgttctag aacagacaat gctcgtcgtg aacaagttgg acccaaactc agtcatctgg 840 atgggaagcg atgccaaaat aaacacgaca aactccagga taaaggagat cggaatgaag 900 aaccaagggc aaacactggt aacgctcact ggagacaact ctaagtacaa tgagagcatg 960 tgcccagaag tgatgatgat tttcctaaga gaacttggga taaagggacc aatgctggaa 1020 gtactcgact atgctttgtg gcagttttct caaaaaagtg tcaaaccagt agcacctata 1080 aagaaaagaa caagcaggtc tactgttgta gtgaaggcgg acgctgttaa cgaatgcaga 1140 gacgctttca atgaaaagga gctggaactc atacaaggag tagagtggat ggaacatgga 1200 ttcatcagag tgagaagagg aatgttgatg ggaatggcaa acaatgcttt tacaacggca 1260 tctacgattg cttcttcttt cagtttcaca cctgaggcag tgtacacact acaaagttcg 1320 gatgacttcg tgactgggag ctgtgggaga gacgtacaac atgcaagaca aagactcgaa 1380 atggctctta aagtgagcaa agctgcaggt ttgaacgttt ctcagaagaa gtctttctat 1440 gtggagggga cgaccttcga gttcaactct atgttcgtaa gagacgggaa agtcatggca 1500 aatgggggca actttgaaaa cataacagtt ccaggtggac ttgggccctc aacagatcta 1560 tttgttgttg ggaaacaggc aagaaactcc atgttgagag gaaacctctc tttcagccaa 1620 gccatggaaa tgtgtaaaat tggaatcaca aatgttgaaa aggtgtacta tgggaacaga 1680 aaataccaag aactgaagaa cgaaatcagg gaaaaatgtg gagaagagac aatgtctata 1740 cctgagagca tgggaggtga taggaaaccc aaaccttggg aacttcctca gagtttcgat 1800 ggaattgcac tcaaagaagc tgtaaacagg ggacactgga aggccgccaa gtacataaaa 1860 tcttgttgca gcatcgagtt cgacgaggaa ggagaccagt cctgggacac gtccaaaacg 1920 gcactagtgg taatcagaaa aaacgaaact gacatgagaa gaagaacagt taaaacaagg 1980 aaccctaagg acaagatctt caatgatgca atgaacaagg ccaagaggat gtacgaaaca 2040 gtggtggaca gaaatccttt acttggactt aaggggaaag gtgggagact gactgtaaag 2100 gatctgaaag caagaaagct tatcgacgag gtggaggtga ttaagaagaa aaagcatgtt 2160 tgattttgtg tgatggtgta tatacccttt tgtattaata aactgtgtgt aataacggaa 2220 ttgacgatat atttttaata agtga 2245 //