ID AJ002234; SV 1; circular; genomic DNA; STD; VRL; 7389 BP. XX AC AJ002234; XX DT 02-JUN-1998 (Rel. 55, Created) DT 26-MAY-2005 (Rel. 83, Last updated, Version 4) XX DE Banana streak OL virus coding regions XX KW . XX OS Banana streak OL virus OC Viruses; Ortervirales; Caulimoviridae; Badnavirus. XX RN [1] RP 1-7389 RA Harper G.; RT ; RL Submitted (18-NOV-1997) to the INSDC. RL Harper G., Dept of Virus Research, John Innes Centre, Colney Lane, Norwich, RL NR4 7UH, UK. XX RN [2] RX DOI; 10.1023/A:1008021921849. RX PUBMED; 9926402. RA Harper G., Hull R.; RT "Cloning and sequence analysis of banana streak virus DNA"; RL Virus Genes 17(3):271-278(1998). XX DR MD5; c8f3d2d4706c10dfac98f5d092483c9b. DR EuropePMC; PMC3719817; 23720724. DR EuropePMC; PMC4974523; 27399761. DR EuropePMC; PMC5537673; 28696406. XX FH Key Location/Qualifiers FH FT source 1..7389 FT /organism="Banana streak OL virus" FT /mol_type="genomic DNA" FT /db_xref="taxon:328671" FT CDS 517..1050 FT /gene="ORF1" FT /product="small protein of unknown function" FT /db_xref="InterPro:IPR010746" FT /db_xref="UniProtKB/TrEMBL:O72698" FT /protein_id="CAA05262.1" FT /translation="MVEKTWDQKFQEFLNSSELTQAQLEYLDLATEAKVSNKDLAHNLH FT INTYRLSLTGKVLWTSGRKNRDLLVQIIGEQEAQKKDLLELQNLSKIVRSQRNDLKKAH FT EKLDVLSDELKALRKDYLKRRPLSKEDVEELVLRISEQPKFIEKQTEALTEELTKEVQN FT LKKIIHDFERKLMG" FT CDS 1047..1451 FT /gene="ORF2" FT /product="small protein of unknown function" FT /db_xref="UniProtKB/TrEMBL:O72699" FT /protein_id="CAA05263.1" FT /translation="MSNSITSSAVYQQAIAGTTGDWESPGVGISDRGSVNNTQLTRQLN FT TIIFLCTKTQQEVLALKDTVADIQNRLRILERTGATSAGTPQLKGEIDAINEKLSRIQQ FT IQGSQPRKDGGTAATSKVFQDPYKLLRNLK" FT CDS 1451..6949 FT /gene="ORF3" FT /product="polyprotein, cleavage products include viral coat FT protein and proteins with homology to an aspartic protease, FT reverse transcriptase and RNase H" FT /db_xref="GOA:O72700" FT /db_xref="InterPro:IPR000477" FT /db_xref="InterPro:IPR001878" FT /db_xref="InterPro:IPR001995" FT /db_xref="InterPro:IPR002156" FT /db_xref="InterPro:IPR018061" FT /db_xref="InterPro:IPR021109" FT /db_xref="InterPro:IPR036875" FT /db_xref="InterPro:IPR041373" FT /db_xref="UniProtKB/TrEMBL:O72700" FT /protein_id="CAA05264.1" FT /translation="MAQRPRITGSRTTTAEEGTPLIDDQIREYRSSRRAAYEAQRIARQ FT TGNIIGRVVGRQPREHTLSMVVDPNSELSRSLAHRARTVPGEVLYMTQRDSPVNRIYRN FT RTEERMLVTNGQQDRSFIYQESFEELASAGFEYIHLGVLQVRIQIMHRTYAGTMALIVF FT RDTRWTQEGEEGRSIIGAMEADLSQGHQLIYVIPDIMMTIRDFYQHVQISILTKGYQGF FT QGEANLLITRSCRCRLTNVPNVGFAYNIQRVVEYLNSKGVKAIQAQKLSTTKYQGTEWN FT IKPSNVVVPMQPTNLITRVNYDNSRSIRFGNYQASTSSAPPKYNEDGDSDDDIQATIEH FT VNMLYIEDTSDTDYPVMAAEEEIFPLENMVGEDDIISQFLENLDITDDEEDSRSQYVMN FT LEDNEEFPQLREIEKVLSSVAETAISSYRPPDAEMGEEAPAYAPATSATGWAGSRPFPF FT MPKGGPRRWDSNNEFYSLPPAQSRQGAMFVMPMDFDIKVFERWESITLLHMTEKIFDNA FT DDKMRYMENLLGEDEKKHFIEWRMKYTAEYETMKAQALGDQGTQNIINQIRLIFFLENP FT QVGTTTSQDAAYKTLKSLVCTEMTDTAIYRYMNDYFHLSAKTGRAWASEELSKEFFTKL FT PRGLGDEVEKAFMEKHPSNTVGITARITFTKRYLKELCEKVALQKSIGKMDFCRSTPVH FT GLYRDKSYRKYGARKSTSYKGKPHKSHVRIGKKKYLSLRKKNCRCYACGEEGHFASECK FT NPRKIMDRVKVLDSLDLEDGLDVISVGFDEDDVSDIYSIDEEADNYRFTNEEMEGFKNY FT EVYMLRMEEMDEPREYLVGEPSEWRSKMKVSRRQYFCKHEWKFEETHVTICKACGSEAA FT PKHRIDCLKCEMTVCLMCQPWFYKNVNTEEVKKTRVRIERVIDWKDIALKQHEVLKTSI FT ANEKQLSEEVEILRKQSKELKEKEPIIFEEDTEETAQLIQKLEDVERENELLNILIKQK FT EKDEIQYLNEIIELKERIKDLEQQQKDKEEQVNVLEEVSINALRPRNNHLNIKCEIEVK FT NKKVVLNAILDTGATVCVADERMIPSGMKEQAKNKIIIRGVNGVTEVNEVTSAGKLWVG FT KQWFYLPQTFIMPSLADGVHMIIGMNFIRTVGLRIENGEVTIYKIMTTVQAPPIVHELN FT YIDELELELHEYYNICAAESSRGEISEEFISPDIIGKMKKLGYIGEEPLKHWEKNQVKC FT RIEVKNPDMIIEDRPLKHVTPTMKETMAKHVQKLLELKVIRPSSSKHRTTAMIVESGTE FT VDPMTGKERRGKERLVFNYKRLNDNTEKDQYSLPGINTIIKRIGNAKIYSKFDLKSGFH FT QVAMDPESIPWTAFWAIDGLYEWLVMPFGLKNAPAIFQRKMDNCFRGTEDFIAVYIDDI FT LVFSETIHQHKEHLKKFMTICEKNGLVLSPTKMKIGTRQIDFLGATIGNSKIKLQPHII FT KKIIEMKDEELKEVKGLRKWLGILNYARSYIPKLGKILGPLYAKTSPNGERRMNTQDWK FT IVKEVKEVVANLPELELPPEKAIMIIETDGCMEGWGGVCKWKTDSLQPRWSEKICAYAS FT GKFTPIKSTIDAEIQAVINSLDKFKIYYLDKKELIIRTDSQAIVSFYKKSSDHKPSRVR FT WLAFTDYITGTGLEIKFEHIDGKDNVLADTLSRLVKIILHPEKHQSEGVLINAVEEVFH FT KGNTDAKQRVNDVVKRYEDWLSKGYRLHQINVLTLSEEPVFKCGCNKPAKLKISRTSRN FT PDREFYSCETNTCFTWVWKDQIDSFVQEKIRWEKKLEEISEDSLWEELLREQENLRAEQ FT EYLIEDALDLLDISNDD" XX SQ Sequence 7389 BP; 2618 A; 1357 C; 1681 G; 1733 T; 0 other; tggtatcaga gcaaggttcg tttttatggc tttcatgggg taattccttt agataggagc 60 cgaagggctc tgcttttctc taattgagtt acaagtttat gatttaaatt gtttaaattg 120 gagctgtatt cagtctttct tagaaaaatg agcatgattt cgattatagc tggtcaaggc 180 tgtagggaaa aatgattatg ttttatgcta gttggtccaa gagagcatgc ctacccaaga 240 aaaagtaccc gaagagaatg ggggaaaaat tggttcttcg catgtatgag gataatatcc 300 tagaaacaga acataacctg cgtgaagtac ttacaaagcc aagataatat cctatataga 360 aacatgggca tcgtgaagta taagactgac tgaactacaa gctcctttat aaacaaaagg 420 atcatagacc tctgtacgtc aatacgggtt aagcatcctg gaggagtact cctatctagt 480 ttacgaaaag aaagtcattc accttgcata caatttatgg tcgagaaaac ttgggatcaa 540 aaattccagg aatttctaaa ctcatctgaa ctcactcaag ctcaacttga gtatcttgac 600 ttggcaacgg aagccaaagt ctcaaacaaa gatcttgctc ataatttgca catcaacact 660 tatcgactaa gccttacagg gaaggtcctt tggacttctg gaaggaaaaa tcgggattta 720 cttgtgcaga taatcggtga gcaggaggct caaaagaagg acttattgga gttgcagaac 780 ttaagtaaga ttgtgcgcag ccagcgtaac gatcttaaga aggctcacga aaagctggac 840 gtcttgtctg atgagcttaa agctctcaga aaggactatc tgaagaggcg ccccttgagc 900 aaagaagacg ttgaggaatt agttttgcgt atctctgaac aacctaagtt catagagaag 960 caaactgagg ccttaactga ggagctgact aaagaagttc aaaatctgaa aaaaattatt 1020 catgactttg agcgaaagct catgggatga gtaattctat cacaagctct gcagtatacc 1080 aacaagcaat tgctggaaca actggtgact gggaatcccc tggagtaggg atatctgacc 1140 gtggatcggt gaacaacacc cagctcacaa gacaactcaa caccattata ttcctgtgta 1200 caaagacaca acaggaagtc ttagccttaa aagacacagt agcggacatc caaaaccgct 1260 tgagaatact tgaaaggacc ggtgcaacat cagccggtac cccacaactt aagggtgaaa 1320 ttgacgccat caacgagaag ttatcaagaa ttcaacaaat tcaagggagt caaccaagga 1380 aagacggtgg tactgcggcc actagcaaag tatttcaaga cccctacaaa cttctcagaa 1440 atttgaagta atggctcaaa gacccagaat taccggatca agaaccacca ctgctgaaga 1500 agggacaccc ttaattgacg accaaataag ggaatataga agctccagaa gagcagcata 1560 cgaagcccaa cgaattgcca ggcagaccgg caatattatt ggaagggttg taggacgaca 1620 accccgggag catacactat ctatggtggt agacccgaat tcggagctca gcagaagtct 1680 tgcccacaga gcaagaacag taccaggaga ggtactatat atgactcaac gagacagtcc 1740 tgtaaataga atttacagaa acaggacaga agaaagaatg ctcgtaacca acgggcaaca 1800 agatagatct ttcatatatc aagaatcatt tgaggagcta gcctcagcag gatttgagta 1860 catccatctg ggtgtattac aagtcaggat ccagatcatg cataggacat atgcaggcac 1920 gatggcctta atagtctttc gtgatacacg atggactcag gaaggagaag aaggcagatc 1980 cattattgga gctatggagg ctgatctgtc acaaggccac caactaatct acgtcatccc 2040 ggatataatg atgaccataa gggatttcta ccaacatgta caaatcagta tcctaactaa 2100 gggataccag ggattccaag gtgaagcaaa tctgctgatt accaggagct gtagatgcag 2160 actcaccaat gttcccaacg tcggattcgc ctataatatt caaagagtag tggagtactt 2220 aaactccaaa ggcgttaaag ctatacaagc tcagaagctg agtacaacaa agtatcaggg 2280 cactgaatgg aacatcaagc cctccaatgt ggttgtacca atgcaaccaa cgaatttgat 2340 caccagagtc aactacgaca actcacggag tatacgattt ggtaattatc aagcaagcac 2400 atcctcagcg ccaccaaaat acaacgaaga tggagattca gatgatgaca tccaagccac 2460 aatagagcat gttaacatgc tttatattga agatacatct gatactgact atccagtcat 2520 ggcagctgaa gaggaaatct ttcctcttga aaacatggtg ggagaagatg acattatctc 2580 ccaatttttg gaaaatttgg atatcacgga tgatgaggaa gattccagat cacaatacgt 2640 gatgaatctg gaagacaatg aagaattccc acaactcagg gaaattgaaa aagtcttatc 2700 ctcagtagct gaaacagcaa tcagttcata tagaccacca gatgctgaaa tgggtgaaga 2760 agcacccgca tatgcaccag ctacaagtgc aacaggatgg gctggatcaa ggcctttccc 2820 ctttatgccc aaaggaggac caaggaggtg ggattccaac aatgaatttt attcattacc 2880 tccagcacaa agtcggcaag gagccatgtt cgtcatgcca atggactttg acatcaaagt 2940 attcgaaagg tgggagagca ttaccctcct acacatgacg gaaaagattt ttgataatgc 3000 tgacgacaaa atgagataca tggagaacct tctcggagaa gacgagaaga agcacttcat 3060 tgaatggagg atgaagtata cagcagaata tgagacaatg aaagctcaag cactcggaga 3120 ccaaggtaca caaaatatca tcaatcaaat tcgattgata ttctttttgg aaaatccgca 3180 agtaggaact actacttcac aagatgcggc ctataaaacc ttgaagagcc tggtctgcac 3240 agagatgaca gacacagcaa tctacagata catgaatgat tatttccatc tgtcagccaa 3300 aacaggaaga gcatgggcct cagaagaatt atccaaggaa ttctttacca aactaccaag 3360 aggtctagga gatgaggttg aaaaggcatt catggaaaaa cacccaagta acacagtagg 3420 gatcaccgca aggatcacct ttaccaaaag atacctaaag gaactgtgtg aaaaggtagc 3480 actacaaaaa agtattggca aaatggattt ctgcagaagc acgccagtac atggtttata 3540 cagagacaag tcatacagaa agtatggagc tagaaaaagt acatcctaca agggaaagcc 3600 ccataaatcc catgttagga ttggtaagaa gaaatattta tccttgagaa agaaaaattg 3660 caggtgttat gcctgtggag aagagggaca tttcgcctct gaatgcaaga atccaagaaa 3720 gatcatggat agagtcaagg ttctggactc tctagacttg gaagatggat tagacgttat 3780 ctcagtcggc tttgatgaag atgacgtatc agacatctat tcaatagatg aagaagctga 3840 taactacagg ttcacaaatg aagaaatgga aggcttcaag aactacgagg tctatatgtt 3900 aagaatggaa gagatggatg agccaaggga atatctcgta ggagaaccat ctgaatggag 3960 atctaagatg aaagtctcca gaagacagta tttctgcaag catgagtgga aatttgaaga 4020 gactcatgtg actatctgca aggcatgcgg atctgaagca gctcctaagc ataggattga 4080 ctgcttgaaa tgtgagatga ctgtttgtct catgtgccaa ccctggttct ataaaaacgt 4140 caacactgaa gaagttaaga aaaccagagt tcggatagaa agggtaattg attggaagga 4200 tattgcacta aaacaacacg aagttctcaa gaccagcatt gcaaatgaga aacaactctc 4260 agaggaagta gaaatcttga ggaaacaaag caaagagctg aaggaaaaag aaccaatcat 4320 ctttgaagaa gacacggagg aaacagctca actgatacag aagctagaag acgtggaaag 4380 agaaaatgag cttctaaata tccttatcaa gcagaaggaa aaggatgaaa tccaatacct 4440 caatgagatt atagagctca aggaaagaat aaaagattta gagcagcaac agaaggacaa 4500 ggaagaacaa gtaaatgtcc ttgaagaagt ctcgattaac gctctgaggc caaggaacaa 4560 ccatctcaat atcaaatgtg agatagaagt caaaaacaag aaggtagtcc tgaacgcaat 4620 tcttgacact ggagctacag tctgtgtagc agatgagagg atgatacctt caggaatgaa 4680 agagcaggcc aaaaacaaaa tcattattcg aggagtcaac ggagtcactg aagtaaacga 4740 ggtgacatca gcgggaaagc tatgggttgg taagcaatgg ttctacctcc ctcaaacttt 4800 tattatgcct tcattagctg atggagttca tatgatcata ggcatgaatt ttattagaac 4860 tgttggccta aggatagaaa atggtgaggt cacaatttat aagatcatga caacagtaca 4920 agccccacca atagttcatg agctgaatta tattgatgaa ctagaactgg aacttcatga 4980 atactataac atatgtgcag ctgagagttc tagaggggaa atttctgaag aatttatatc 5040 tcctgacatt attggaaaaa tgaaaaaatt gggatatatt ggagaagaac ctctcaaaca 5100 ttgggagaaa aatcaggtga aatgtaggat tgaagtaaaa aaccctgata tgattattga 5160 agacaggcca ttaaaacatg ttacccctac aatgaaagaa accatggcta agcatgtcca 5220 gaagctttta gaacttaaag tgatcaggcc ttcaagctca aaacatagaa caacggcaat 5280 gatagtagaa tctgggacag aggttgaccc aatgactgga aaggaaagaa gaggaaagga 5340 gagattggtg tttaactata agaggctgaa tgataacact gaaaaagacc agtacagttt 5400 gcctggaatt aacaccatta ttaagagaat tggaaatgcc aagatctata gcaagtttga 5460 tttaaagagt gggtttcatc aagtagcaat ggacccagag tctattccct ggacggcatt 5520 ttgggctata gatgggctgt atgagtggct agttatgccc tttggactta aaaatgctcc 5580 tgccatattt caacgaaaaa tggacaattg ctttagaggg acagaggatt ttattgcggt 5640 atacattgat gacatactag tattctctga aacaatacac caacataaag agcatttgaa 5700 gaaatttatg acaatctgcg agaaaaatgg tttagtctta agtccgacaa aaatgaaaat 5760 tggaacaaga cagattgact tcctaggtgc aactattgga aactcaaaaa ttaagttgca 5820 gcctcatatt attaaaaaga tcatcgaaat gaaagatgaa gaactaaagg aagtgaaagg 5880 attaaggaaa tggctgggaa tccttaatta tgctaggagc tacattccga aactgggaaa 5940 aatccttgga ccactgtatg ccaaaacgag tcctaatgga gaaagaagaa tgaatactca 6000 ggactggaaa attgtcaaag aggtcaagga agttgtagct aatctgccag aacttgagtt 6060 accccccgaa aaagctatca tgataattga aacggatggc tgtatggaag gctggggagg 6120 ggtatgtaag tggaaaactg atagtctgca gccaagatgg tcagaaaaga tctgtgctta 6180 tgcgagcggg aaattcactc ccatcaaaag cacaattgac gcagagatac aggctgtaat 6240 aaacagttta gacaagttca agatatatta tcttgataag aaagagctca taatcagaac 6300 tgacagtcaa gcaatagtga gcttttacaa gaaaagcagt gatcataaac catcaagagt 6360 cagatggctt gccttcacag attacattac cgggacaggt cttgagatta agtttgaaca 6420 cattgacgga aaggacaacg ttttagcaga cactctgtca agactggtaa agattattct 6480 ccatccggaa aagcatcaat ctgaaggtgt gttgatcaat gcagtggagg aggtatttca 6540 caagggaaac accgatgcaa aacagagagt taatgatgtt gtaaaaagat atgaagactg 6600 gttgagcaaa ggctacaggt tgcatcaaat caatgtgcta acactaagtg aagagccggt 6660 tttcaaatgt ggatgcaata aaccagcaaa actgaagatc tccagaacat ccagaaatcc 6720 tgacagggag ttttactcct gtgaaactaa cacttgtttt acttgggtct ggaaagacca 6780 aattgactcg tttgtgcagg aaaagatcag atgggagaag aaacttgaag aaatatcaga 6840 agactcactg tgggaggaat tactgaggga gcaagaaaat ctgcgtgcag aacaagaata 6900 tcttattgaa gatgctctag atctgctgga tatcagtaat gatgactgaa gcggaagtgg 6960 cggaccccta ccacgtgttg ataccaaccg gtgtgaagac tgataagatg cggagtgagc 7020 tggataccac tcactttatg taaagaggag acaaagtata atgtctcttt attttaagtt 7080 tgtcggtgtg cgttgtctag tcacgcacga tgacctttag taactttgca ggattcttac 7140 gcaaagttgt taggccagag acatgtgatg atgcttatct gcattattgg tggatgccac 7200 ctaacgatgc cagaaagctc cacaactctc tatataagga gccttgtatt caggttgcaa 7260 acacgcacca caacgcgagt ttactcctga tttgagaaat aaaaacttct gtgcttgaaa 7320 cacactttgt gcgagttcac tttgtgcgag tagagcgcaa gatcctagtt ccgcgagcgt 7380 agacccgtc 7389 //