ID AF525216; SV 1; linear; genomic RNA; STD; VRL; 6273 BP. XX AC AF525216; XX DT 12-AUG-2002 (Rel. 72, Created) DT 25-MAR-2005 (Rel. 83, Last updated, Version 2) XX DE Giardia lamblia virus, complete genome. XX KW . XX OS Giardia lamblia virus OC Viruses; Riboviria; Totiviridae; Giardiavirus. XX RN [1] RP 1-6273 RX DOI; 10.1016/j.exppara.2004.12.006. RX PUBMED; 15713450. RA Liu Q., Zhang X., Li J., Ying J., Chen L., Zhao Y., Wei F., Wu T.; RT "Giardia lamblia: stable expression of green fluorescent protein mediated RT by giardiavirus"; RL Exp. Parasitol. 109(3):181-187(2005). XX RN [2] RP 1-6273 RA Tian Z., Zhang X., Li J., Yin J., Yang J.; RT "Genomic sequence of giardiavirus in Giardia lamblia isolated from human in RT China"; RL Unpublished. XX RN [3] RP 1-6273 RA Tian Z., Zhang X., Li J., Yian J., Yang J.; RT ; RL Submitted (19-JUN-2002) to the INSDC. RL Veterinary Preventive Medicine, Changchun University of Agriculture and RL Animal Sciences, 175, Xian Road, Changchun, Jilin 130062, China XX DR MD5; 90500f327a385b43999ef228701899c2. XX FH Key Location/Qualifiers FH FT source 1..6273 FT /organism="Giardia lamblia virus" FT /mol_type="genomic RNA" FT /country="China" FT /db_xref="taxon:29255" FT CDS 367..3027 FT /codon_start=1 FT /product="capsid protein" FT /note="ORF1" FT /db_xref="UniProtKB/TrEMBL:Q8JPV9" FT /protein_id="AAM77693.1" FT /translation="MVWGTGYGNTSPLNPYGFASLHRGGLNPLILAPENITFDTLNTQN FT DHEETYGESPEVPKASIAPAGRQNVPVLQQKQENEDNHALGGSEDAKDEREIQFSAIKT FT LYNYYSEGPSIPIMPHLVNRLRGLDALAKVDATLSKVDMNAAYIFALRPTFPYSYGYKQ FT RFSNRRLTTSALCYARTGLSSFLTVDKTYTSNSPLKGGSRGWPIFNIGVSPHVAEPHMR FT TLSPIGLEVFNLATSQFSKTLLTASSKVFTQSLYTADILSIFGEVFLPHVMQPVSNYTP FT ILVRALLALIHILGPGSGNCSLSSSIFESSIPQFLTISHSTNMSNRTRYCLHTWSAYKD FT MFRNGIPPQSTFPPTLAPEGSSARILIPAALVTSPMFPWLLVLVSSGPQFFLYSKDASI FT NTVHIGSRGRITSPISDVAHLDLHRLWNLFRFDGYRYIDVVIVGVGRDYVWPYQNGVYV FT HGGKGPKGTDNYENADVHDGIGTIFSSFNNNVNVQTSDLLLGLSTLWNHIATTYATEEE FT VTMAIKIAAAFALVYPVQPIVYSGCSSAFHNHTSYFQPSSENCYTTDTAEVKSTWDTVE FT LSVQVNDAMVLGMTLPFGQPTVSSARWFNNIDKAEISMFKVGNLPLQNLDYLSLDMMEF FT YAPTTGQLYDIRSDNLISSAHRTVNLGIGYTALADFFAYLASVPAQSFYHDRMVTSPIS FT KQAYSVYERFIERFIDDFVGWGRCDLFNLDTLLHAKHIVGVPSSLIPWHCSLQRCPLPI FT IMHYTGLHFGQEHITVRDVAGVEGLQQIVLRNDQGSIVLDALGTAAPSRLAVKLDWSKL FT SAWYSDTTCAIPLSDRVMEIVNYAAIWDPTQERRAQVSCTHTLAPTSFRALTCLSLYST FT RPSTLHHLTMTRAKL" FT CDS 2880..5978 FT /codon_start=1 FT /product="gag-pol fusion protein" FT /note="ORF2" FT /db_xref="GOA:Q8JPV8" FT /db_xref="InterPro:IPR001795" FT /db_xref="UniProtKB/TrEMBL:Q8JPV8" FT /protein_id="AAM77694.1" FT /translation="MGSYAGKTRTGFVYTYFSPNFLSSFNVSEPIFHKAINLTPPYDDT FT SQTVIQNLSMPQMLSFDPYYESTFYVVSADNEWIPTSGPAWKVPYLENVVKRSGRRLLA FT ELRIASNNGSGDRTFLTTCKTRKGRHYAYFSAALGGKILEFVCAPLSSISLQGGQTIYA FT PIQLQDAIPVRREDPVPGSIYAVFKFFSEPKAWEIRALKSYKVRFQDLPSHIVISELKE FT RAARSYIGSRGYVDTGFKALDIYIDILSQMELPKYIHEFLVLLRGKVCEVSRLYKKEQV FT FIILLTVFSELTAIVRHRGNKSTGSMGRMWTLLSDFETLLGKVSYKNPSIIEEQVVPWL FT TSDPIPRTPDFYSTYFKMAVQFMHRTFVPVTLRSAPPLTFYEYCARSELWGTTGSGYIG FT YGKRSFNKWSIYGAYPTEEIYRLALYGDNPPLKPLEKPELTKVRAVISASFQSYILMSY FT LEYIMADTLVDKAFTTTLMNDRQLENLERHMMTMTGGVRVPVDQSNFDRQPDLVQIGIW FT QQLLFHLASASAPYRARDSVSLVISRLASTTTFPNLKVRMSDGDKRVLHGLPSGWKWTA FT LLGALINVTQLLTMAELSNTLASLRSTVVQGDDIALSMTDREQATQLVDTYARQGFEVN FT PKKFWISPDRDEFLRRVATPGIVAGYPARMMIKLLYQLTEPEEPSHYISMLPKLAKVPN FT MVREYVSPRSDVPWSETVEELDWREALAILRHRPARTSELVTQWLQLIGRFTAAHPDKR FT ALTLLYHWFVRDLTHATKIKKRNLLVLLQQPGFWGGYSQSLVGLLRTTHLADMIVSELD FT IGLPGPRATSNRFGTSPTSLAPHYLTLIVPSSVHVQSQKELDLWGLCRSSIYAKHYSNI FT FRYYKLTLPTLVLWAQRLGDKHVTDFIRSVTLGSEIPKYDPHTRLFTSNGVSVGTLIRI FT RVRHFTHRVLRRETPKCIPVIVGLYREQTLSVPESVRLSEPDKILSSLQRASGYSLSLV FT KKILQITRKPVDHPVDARFSQAFPNNWSDLARTAGTFLLTVPA" XX SQ Sequence 6273 BP; 1611 A; 1570 C; 1548 G; 1544 T; 0 other; ggaaggagtg ccaggccatt accctccgcc cctgcctaac aaaactggct taccagaggc 60 gggggggcgt ggtagacggt atgtctaggt ccagagaaag cggtcgctgt taagccgctg 120 gacttcgcca cgcttacacc atcgagaaca cataagtggt gtaatattat gtgtttggct 180 gcgtgtgtca cgagcacgac ccatggagga atctaaccca ggtggtgttg tgtatgataa 240 ggtacaagcc cgtcaacacc acaggtggag agggacagga gtcccatttc ccctctagaa 300 aacagcagtg gtccgcccct catgccctat gaaacgttag ggggccgaca ctagtgggca 360 agcccgatgg tgtgggggac tggatatggg aacaccagtc cgttaaaccc gtacggcttc 420 gccagcctac accggggggg gcttaatccc cttattttgg cacctgaaaa tattactttt 480 gacactttga acacacagaa tgaccacgag gagacctacg gagagtctcc agaggttcct 540 aaggcctcga tcgcgcctgc cgggaggcag aatgtcccgg ttctccaaca aaaacaagaa 600 aacgaagata atcacgcgct gggcggcagc gaggacgcca aagacgagcg cgaaatacag 660 ttttcagcta taaaaactct ctacaattat tactcagaag gtccttcgat cccaattatg 720 ccacatttag tcaacaggtt acgaggatta gatgctctag ccaaggtaga cgcgacgctg 780 agcaaggtgg atatgaacgc ggcctacata ttcgccctga gaccgacttt tccgtattcg 840 tatgggtata aacaacgttt cagtaacagg agattgacca ctagtgcgct ttgctacgca 900 aggacaggcc tatcctcatt tctgacagtc gacaaaacgt acacgtccaa ctctccatta 960 aaagggggct ctagagggtg gcccattttt aacataggtg tttcgccaca cgtggcggag 1020 cctcacatga ggacattgtc acctatcggt cttgaagtat tcaatctggc tacttctcag 1080 ttttcgaaaa ctctattaac tgcatcatcg aaagtcttca cgcagtcact ctacactgct 1140 gacatactat cgatctttgg tgaggtgttc ctgccacacg tgatgcaacc ggtctcaaac 1200 tacactccaa tacttgtgag ggcgctattg gccttgatcc acatactggg gccaggatct 1260 ggtaattgct cactttcatc gtctatcttt gagagttcaa ttccacaatt cttaacgata 1320 agccatagta caaacatgtc gaacagaacg aggtactgct tacatacatg gtctgcttac 1380 aaggatatgt tcagaaacgg tatcccacct cagtcgacgt ttccaccgac gctcgcgcca 1440 gaggggtcct ctgctcggat tctaatccca gcggccctag tgaccagccc tatgtttcca 1500 tggttacttg tattagtctc gagcggccca cagttcttct tgtattcaaa ggacgctagt 1560 attaataccg tacacatcgg ttcgaggggg aggattacat caccaatctc tgacgtcgcc 1620 caccttgatc tccacagact ctggaatctc ttccgttttg atggttaccg ctatatcgac 1680 gtggtcatag tgggcgtagg tagagattat gtgtggccct atcaaaatgg cgtgtatgta 1740 cacggcggta agggacccaa aggtactgac aactacgaga atgctgacgt tcacgacgga 1800 atagggacga tattttcgtc ctttaataac aatgttaacg tgcaaacgtc cgacctcctg 1860 ctaggcttat cgaccctgtg gaatcacata gcgactacgt acgctactga ggaggaggtt 1920 accatggcga ttaagattgc agcggctttt gccctcgtct acccagtaca gcctattgtc 1980 tactctggct gttcgagcgc ttttcataat cacacgtcat atttccagcc ctcatcggag 2040 aactgctaca caaccgatac ggctgaagtg aagagcacgt gggatacggt cgagcttagt 2100 gtacaggtta acgacgctat ggtactaggt atgacactac cgtttggcca acctacagtt 2160 agcagtgcac gatggtttaa taacatcgat aaggccgaga tctctatgtt taaggtcggt 2220 aatctaccgt tacagaacct cgattatcta tctctcgaca tgatggaatt ctacgctcct 2280 acgacgggac aattgtacga catacgtagt gataacctga tctcgagcgc ccataggacg 2340 gtgaacctcg gaataggcta cacagccctg gcagatttct tcgcctatct agcttcagtt 2400 cctgcccaga gtttttacca cgacaggatg gtcacctcac cgatttcaaa gcaggcgtac 2460 tccgtctatg aacgttttat tgaacgtttt attgatgact tcgtgggctg gggcagatgt 2520 gacctgttca accttgatac attgttacat gcaaaacaca tagtcggggt accctcatct 2580 ctaatcccgt ggcactgctc gctacagaga tgtccactac ccataatcat gcattacaca 2640 ggcctacatt tcggccagga gcatataaca gtcagggacg tcgccggggt tgaaggctta 2700 cagcagattg tgttgaggaa cgaccagggt agtatcgtac tagacgcctt gggcactgct 2760 gcaccatcta gacttgcagt caaattagac tggtctaagc ttagcgcctg gtactcagat 2820 acaacctgcg ccatcccttt atccgatcgt gtgatggaga tcgtcaatta cgcagcaata 2880 tgggatccta cgcaggaaag acgcgcacag gtttcgtgta cacatacttt agccccaact 2940 tcctttcgag ctttaacgtg tctgagccta tattccacaa ggccatcaac cttacaccac 3000 cttacgatga cacgagccaa actgtaattc aaaatttgtc catgccacag atgctcagct 3060 tcgatcccta ctacgagtct acgttctatg tggtctccgc ggataacgag tggataccga 3120 cttcagggcc tgcttggaag gtaccatacc tggaaaacgt agttaagcgg tctggcaggc 3180 gcttgctggc ggagctcagg atagcatcca ataacgggtc tggagaccgt accttcttga 3240 cgacgtgtaa gacaagaaaa ggaaggcatt atgcctattt ctctgctgct ttggggggca 3300 agatcctgga attcgtatgc gctccactgt cgagtatcag tctccagggc gggcaaacga 3360 tctacgctcc gattcagctc caagacgcca taccagtacg tagagaagat ccagtgccag 3420 ggagcatata cgcagtcttt aagtttttct cagaaccaaa ggcttgggag atacgtgcac 3480 ttaagtccta caaagttagg ttccaagatc tcccaagcca catagtgatt agtgagctaa 3540 aagagagagc ggcgagaagt tatatcgggt cgaggggtta tgtcgataca ggttttaagg 3600 ctttggacat ttatatagat attctttccc aaatggagct gccaaagtac atacacgagt 3660 tcttagtttt actcagaggc aaggtgtgtg aagtttcgag gttgtacaag aaggaacagg 3720 tattcataat actactaacc gtattctctg agctcacagc catagttcgc catagaggta 3780 acaagtccac ggggtcgatg gggaggatgt ggactttgtt atcagacttc gagaccctgc 3840 ttgggaaggt gagctataag aacccgagta tcattgagga gcaggttgtt ccctggctaa 3900 cctcagatcc tataccacgt acccctgatt tctactctac gtatttcaag atggcggttc 3960 agtttatgca caggacattc gttcctgtca ctctcagaag tgcccctccg ttaacatttt 4020 acgagtactg tgcgaggtcg gagctctggg gaaccacggg atccggctac atcggctatg 4080 gcaagcgcag tttcaacaaa tggtcgatct acggagctta tcctaccgag gagatttatc 4140 ggctagcact ctatggagat aatccacccc tcaagccgct ggaaaaaccc gaacttacga 4200 aggtacgtgc tgtaatctcc gcctctttcc aatcgtacat attgatgtcc tacctcgagt 4260 acatcatggc agacacctta gttgacaaag cattcactac aactctgatg aacgacaggc 4320 agttagagaa ccttgagcgc cacatgatga ccatgaccgg aggagtcagg gttccagtgg 4380 accagtccaa ttttgatcgt cagcctgact tggtccaaat aggcatctgg caacagttac 4440 tatttcacct agcatctgcg tcagccccgt acagggcccg cgacagtgtc tcactagtca 4500 tatcacgttt agcctcaact acgaccttcc cgaacctaaa ggtacggatg tcggacggtg 4560 ataaacgtgt gctacacggc ctcccctcgg ggtggaagtg gactgctctg ctgggggctc 4620 tcatcaatgt gacacaactt ctaaccatgg cggaattgtc caacactctg gcctcgttga 4680 ggtcaacggt ggtacagggc gacgatatcg ctctaagtat gactgaccgg gagcaggcca 4740 cacagttagt tgacacttat gcacgtcaag ggttcgaggt caacccgaag aagttctgga 4800 tatcacccga ccgggacgaa ttcctccgga gggtagcaac ccctggtata gtcgcggggt 4860 acccagctag aatgatgatt aaattgttat atcagttgac ggaacctgaa gagccctcac 4920 actacatctc catgttgcca aagctagcga aggtgcctaa catggtccgg gagtatgtaa 4980 gcccccggtc tgatgtgcca tggtcggaga ccgtcgaaga acttgattgg cgcgaagctc 5040 tcgctatact gaggcatagg cctgcccgta catcagaact ggtgactcaa tggctgcaac 5100 tgattggtag gtttacagct gctcatcctg ataagcgagc cttaactctt ctttaccatt 5160 ggttcgtgag agacttgacg catgctacaa aaataaaaaa aagaaatctt ctggtcctgt 5220 tacagcagcc gggcttctgg ggaggttatt cccagagcct ggttggcttg ttaaggacca 5280 ctcacctcgc agatatgata gttagcgaac tagacatagg actgccaggt cctcgggcca 5340 cgtctaatcg ctttgggaca tcccctactt cactggcccc gcactacctc actctgatag 5400 ttccgagtag cgtgcatgtg cagtcgcaaa aggaactgga tttgtggggg ctgtgcagat 5460 ccagtatata tgctaagcac tattcaaaca tatttcgata ctacaaactg actcttccta 5520 cgttggtgct ttgggcccaa cggctaggtg ataaacacgt caccgatttc attagatctg 5580 tcaccctggg ttcagaaata ccaaaatatg acccgcatac gcgtctattc acaagtaacg 5640 gggtgtcagt aggaacgtta ataaggataa gagtacgaca ttttacccac agagtgcttc 5700 gaagagagac acctaagtgt atccccgtaa tcgtcgggct atatcgggag cagacactat 5760 ccgttccgga gagtgttcgt ctatcggaac ctgacaagat actatcaagc ctacaacggg 5820 cgtcgggtta ctcactgagt ctagttaaga agatattaca gatcactagg aaaccagtgg 5880 accatccggt ggacgcgagg ttctcacagg cattccctaa caactggagc gacttggcta 5940 gaacggctgg cacctttttg ttaactgtac cggcttagga ggtttcagga gacaatgcta 6000 gccttgtcgc tgagcgtttg ggcttcaacc atagcagccg gcttcacgca atttttaggt 6060 caaggaaatt tctcctttgc gtagtagcgt agctgctcaa agaaaagaaa atactagtaa 6120 ttactgcaca cgatcggtgg gtcggccagc atagggtggt gtgcggtccg agaacgggac 6180 tggccttagt accgtcataa cacctggaca cgtgttgaaa ctgtcccccc tgtagactcc 6240 gttggctgta ggaggcagcg tacgaggggg tcg 6273 //