ID AF434991; SV 1; linear; mRNA; STD; VRL; 6552 BP. XX AC AF434991; XX DT 09-DEC-2001 (Rel. 70, Created) DT 16-APR-2003 (Rel. 75, Last updated, Version 2) XX DE Trout rhabdovirus 903/87 nucleocapsid protein, phosphoprotein, matrix DE protein, and glycoprotein genes, complete cds; and polymerase protein gene, DE partial cds. XX KW . XX OS Lake trout rhabdovirus 903/87 OC Viruses; Riboviria; Negarnaviricota; Haploviricotina; Monjiviricetes; OC Mononegavirales; Rhabdoviridae; Perhabdovirus. XX RN [1] RP 1-6552 RX DOI; 10.1016/S0168-1702(01)00323-9. RX PUBMED; 11597744. RA Johansson T., Nylund S., Olesen N.J., Bjorklund H.; RT "Molecular characterisation of the nucleocapsid protein gene, glycoprotein RT gene and gene junctions of rhabdovirus 903/87, a novel fish pathogenic RT rhabdovirus"; RL Virus Res. 80(1-2):11-22(2001). XX RN [2] RP 1-6552 RX DOI; 10.1023/A:1020153616947. RX PUBMED; 12416676. RA Johansson T., Ostman-Myllyoja L., Hellstrom A., Martelius S., Olesen N.J., RA Bjorklund H.; RT "A novel fish rhabdovirus from sweden is closely related to the Finnish RT rhabdovirus 903/87"; RL Virus Genes 25(2):127-138(2002). XX RN [3] RP 1-6552 RA Johansson T., Nylund S., Olesen N.J., Bjorklund H.; RT ; RL Submitted (16-OCT-2001) to the INSDC. RL Department of Biology/Institute of Parasitology, Abo Akademi University, RL Artillerigatan 6 A 2, Turku 20520, Finland XX DR MD5; 26a681957d86f4b696b1323cf97cc0cf. DR EuropePMC; PMC4036773; 24857764. XX FH Key Location/Qualifiers FH FT source 1..6552 FT /organism="Lake trout rhabdovirus 903/87" FT /host="Salmo trutta m. lacustris" FT /mol_type="mRNA" FT /note="cRNA sequence" FT /db_xref="taxon:170618" FT CDS 89..1369 FT /codon_start=1 FT /product="nucleocapsid protein" FT /db_xref="GOA:Q77JP7" FT /db_xref="InterPro:IPR000448" FT /db_xref="InterPro:IPR023330" FT /db_xref="InterPro:IPR023331" FT /db_xref="InterPro:IPR035961" FT /db_xref="UniProtKB/TrEMBL:Q77JP7" FT /protein_id="AAL38515.1" FT /translation="MDNSLVVVRATKAAFVPVRPKLEDEVNYPSEFFVDGKIPAFLHYY FT ADKTQAELLGMIFGELSESRLPSELVTSYLYNVIKDWVEKLDAAWESYGTTIGDLNEVI FT NAFSLMSYQVAAQPLPDYKVGAVPADIDPVAMVIFLLAPYRIVGIQNEEYQTRVMQTIQ FT NQLDSLGAKKLSVRQLKNITTLTKSPNYLKVVAAVDMFYFHFKNNNEKAVVRVSTLGSR FT HRDCAALATLNHIVQFTGLTLLEVLDWVFTDQVAMEIARMMHPNQEIDQADSYMPYLKD FT FGLCRKSPYSSSANPGTHCWAQMTCALLGSKRSQNAIANTEENLVNLTRNAEIMACVLG FT TGATLVKAIEINGVTGSEDDDDATEEDGTAEPTSMEALDWLDYVKANNCQLTPKMEARV FT HMMSQRIQHARKDTVGAYLKARVSADH" FT CDS 1569..2561 FT /codon_start=1 FT /product="phosphoprotein" FT /db_xref="UniProtKB/TrEMBL:Q8V319" FT /protein_id="AAL38516.1" FT /translation="MLSSNAQAKWSGVKQEIATLARGISGAGRSEENSLGIEPEKGDFK FT PVTTSALSEFEVYTLTADEMLKEYGGDEEEEEEGDQYYAILPSDPGFQDESNPSDPSLE FT SWTGQARDEEMEVDNDWNVHKGHLMGERTEREKTMIYREMTAMLGLFGGFLTVPKDGDH FT YLVAMPSSNRMDRLGDEALRNKQIEQAQTEREQRKNHAADKSPQIPTFSVERPKPAPVA FT VPRPPGLVKPTKPTEQKPKKVVEKCNYVSLEGTIGRKVWDSGVNGADVNGKVANFSPLK FT MGWNIKDWDTRVSELGEVTTPQQLFLLMVQKSQKRNIYKRKYVSFSIVE" FT CDS 2771..3412 FT /codon_start=1 FT /product="matrix protein" FT /db_xref="GOA:Q8V318" FT /db_xref="InterPro:IPR009397" FT /db_xref="UniProtKB/TrEMBL:Q8V318" FT /protein_id="AAL38517.1" FT /translation="MALSLFKKKDKNTKMSKGAMVVAVPTAPPAYPDAPGPFDAWNHTE FT IEEISTVSYLIDTCMSVTTKRPIQSVMEAYKIAQGILDHYSGPHLTRPFFISLFLGGIH FT GMQASARGTHSVRYEREFHGPLMFLYHLSNPLDWTPRPVSMHYTSSLDGHPVEVVFEAK FT LTATRQTGPNVWTYFEGIKGLDRPNNEKVLNHFLVKTMQMGKNLVFNLDA" FT CDS 3532..5085 FT /codon_start=1 FT /product="glycoprotein" FT /db_xref="GOA:Q8UY99" FT /db_xref="InterPro:IPR001903" FT /db_xref="UniProtKB/TrEMBL:Q8UY99" FT /protein_id="AAL38518.1" FT /translation="MDLLLKILLIIIIIKEARTRIAFVPLDLGTWRATSVDQLDCPMQG FT DLVNQGTDAIEVRYQTAAWGLKNSVAGKLCVTAKWSITCDYRWYGSKYISTQIEYLPTT FT PEMCKEAKRQLDRGELLSPHFSSENCGWNNVLTESETYTTIVSHPVKLDAYSLTLIDNI FT FEGGKCHEEECPSLLHQGFWIADKNSLGLCKQLDSHIGRLFKTGLRNSMGTVVRQQWDI FT NSIFQPEIGREKNFNGACTMEFCGHQGLRFADREWFKIPEQANQSLKKVFKDLPSCGTD FT NLVHSHDINTDVKEITEHVHEVALHAICLQEVRRAKDSNTVSDWLLSMMTPFSEGAGPV FT YRIHNGKLESTVGFYRKVLIEGGGTTEQLGIGFDKKPIKWDQFVVKTNDTRVQSMYNGN FT TVVDGEIHWAKNVLGSHILDEIAALEFDIPLIQHPHLDGILINETHVISSHHPNGQGVN FT FVESVTHWAGGIWESVGSSAIIIAVILVVGFVLVKFCMRFSMPVRRERREEGMMMLQRA FT " FT CDS 5184..>6552 FT /codon_start=1 FT /product="polymerase protein" FT /db_xref="GOA:Q8V317" FT /db_xref="InterPro:IPR014023" FT /db_xref="UniProtKB/TrEMBL:Q8V317" FT /protein_id="AAL38519.1" FT /translation="MSYDDTWEDPHWGDSTDDADIPEWLSDDIVRGNPLNQKDYSLNSP FT LISDATIALMNYLNDGLTEKRFERSNANFALIQKTLKTQRWKHPEVHNHKWMGLWINKE FT ETCKAFANLIDQTNADVLETEGILQAFLKGWIDQTTSAPTKTGWTARQRSYGAKFFLLH FT RMILLMNAQSEEERDLLQKSLHLTRAIEKELIYRGESTTLGKYTLTSDFLLLQDQEIIL FT DRTFVLMLKDTLVGRMQTLACFMNREDKKYEDGIIEKMEKLYWIGDKMLADIGDDAYAG FT IKLLEPICNLRLAEMARTFRPLVPEFPHFRQHVETAVQEESQENFHLSDFYDFVNAEQN FT VETLLAFFGSFRHWGHPYIDYFEGLKKLNKQVTLPKEIDETYAEALASDLAYMILRKHF FT NTKRIWAVAKERVANDHPLKDHIKNATWPTPKQIDDFGDNWHKLPLTKIFEIPDLID" XX SQ Sequence 6552 BP; 2158 A; 1319 C; 1549 G; 1526 T; 0 other; aacagtaatc acaaagactt agattgaaca aatcaaagaa aacttgtaat tactaaatca 60 cattaagaag attacccaga tcagaaatat ggataactca cttgttgtcg tccgagccac 120 caaggctgct ttcgtacccg ttcgacccaa attggaagat gaggtcaact accctagtga 180 gttctttgtg gacggaaaaa tccctgcatt cttgcactac tatgctgaca aaactcaggc 240 tgaacttctg gggatgatct ttggagaatt gtctgagtct agactgccta gcgaattggt 300 tacatcatac ctgtacaacg tgatcaaaga ctgggtagag aagctggacg cagcatggga 360 atcctacggg acaaccatcg gggatctcaa tgaggtcatt aacgctttct ccctgatgtc 420 ctatcaagtt gcagctcagc cacttcctga ttacaaggtg ggagcagttc ctgctgacat 480 agaccctgtc gctatggtga tctttctctt ggctccttac agaattgtgg ggattcaaaa 540 cgaagagtat cagacacgag tcatgcagac aatccagaat cagctggaca gcctgggagc 600 aaagaagttg tctgtgagac agctgaaaaa catcactact ctgacaaaga gtccaaatta 660 cctgaaggtg gtcgctgcag tggatatgtt ctacttccac ttcaagaaca acaatgaaaa 720 agctgtagtc cgagtgtcca ctctggggtc tcgacacaga gattgtgctg cactggcaac 780 actgaatcac attgtgcagt tcactggatt gaccttgctc gaagttctgg attgggtctt 840 tacagatcag gtagccatgg aaattgcgag gatgatgcac ccaaaccagg aaattgacca 900 ggctgattcc tacatgccat acctcaaaga cttcggcctg tgcaggaaat ctccttactc 960 atcatctgcg aatccaggaa cccactgctg ggcacagatg acttgtgctc tgctgggctc 1020 taagcggtca cagaatgcga tagctaacac agaggaaaat cttgtcaact tgaccaggaa 1080 tgctgagatc atggcctgtg tcctgggaac gggagcgaca cttgtcaagg ctattgagat 1140 caatggtgtg acaggatctg aagatgatga cgatgccact gaggaagacg ggactgcaga 1200 gccaacatcc atggaagcac tggactggct agactatgtc aaggccaaca attgccagct 1260 gactccgaag atggaagcaa gagtccacat gatgagtcag aggatccagc atgcccgtaa 1320 agacacagtg ggtgcttacc tgaaagccag agtgtctgct gatcattaaa acagctgtca 1380 gcaatgaggc cttaaaggag aaaaaatgga taaaattaca gaaataacat caagagagtt 1440 tgtgataatg aagctatatc gtcagaggaa gtctgattta ttatgaaaaa aactttaaca 1500 gaattcaacc gaattttgga gattacactt aactgaactt aacaaataga tataaagaaa 1560 ggataacaat gctgtcatca aatgcacaag caaagtggag cggggtcaaa caggaaatag 1620 caactttggc cagaggaatc agtggagcag gcagatctga agagaacagt ttgggaattg 1680 aaccagagaa gggtgacttc aagccagtga caacgtctgc cctcagtgag ttcgaggtgt 1740 acactctaac tgctgatgaa atgctcaaag agtacggtgg agacgaagag gaagaagagg 1800 aaggggatca atattatgca attttaccgt ctgatcccgg atttcaggat gagtcaaacc 1860 cttctgatcc gtctttggag agctggacgg gacaagccag agacgaagag atggaggtgg 1920 acaatgattg gaacgtccac aaaggacatc tgatgggaga acgcacagaa agagaaaaga 1980 ccatgatcta cagagaaatg actgctatgc tagggctgtt cggaggcttt ttgactgttc 2040 caaaagatgg tgatcactac ttggttgcga tgccatcatc caatagaatg gacagattgg 2100 gtgatgaggc tctcaggaat aagcagatcg aacaggcaca aaccgaaaga gaacagagaa 2160 agaatcatgc agctgacaag tcacctcaaa ttcccacttt ctccgtagag cgacctaaac 2220 cagctcctgt tgctgtgcca agacctcctg gactagtgaa accaacaaaa ccaactgagc 2280 aaaaaccaaa aaaggtggtg gagaaatgca actatgtgtc tttggagggg accattggaa 2340 gaaaggtatg ggacagcgga gtgaatggag ccgacgtcaa tggaaaagtg gccaactttt 2400 cacctctcaa gatggggtgg aacataaagg actgggacac tagagtgtct gaattgggag 2460 aagtgaccac accacaacag ttgttcctcc tgatggtgca aaagtctcag aagagaaaca 2520 tatacaaaag gaagtatgtc agcttcagca ttgtggaata acaagacaag tgatgcagat 2580 aatcacacgg taagtccata aaattgtcaa agaagatgct attgatcaaa aatgtgagga 2640 tgaatgatgt gtgtacgaaa aaaaccagtt aacagagatc aacagagact tgattgacga 2700 acgcacaaac aaagaagcaa caggattact ccattaacta aagattaaac agtaattact 2760 caaacaaaca atggcactca gcttgttcaa gaaaaaggat aagaacacta aaatgtccaa 2820 aggtgctatg gttgtagctg tgccgacagc tcctccagct tatcctgatg cgccagggcc 2880 gttcgatgct tggaatcaca ccgagataga agagattagc acggtgtcat acctgattga 2940 cacatgtatg tcagtgacaa ctaagcgccc gatccagagt gttatggaag cgtacaaaat 3000 cgcgcaggga atcttagacc actacagtgg gcctcatcta actcgccctt tcttcatttc 3060 actgttcctg ggaggaatac atggaatgca ggctagcgca agaggcacac acagtgtcag 3120 gtacgaaaga gaattccatg gacctctaat gttcttgtac catctgagca atccattgga 3180 ctggacccca agaccggtct caatgcacta cacatctagt ctggatggac atcccgttga 3240 ggtggtattt gaggcaaagc tgacggcaac acgccagaca gggccaaatg tgtggactta 3300 cttcgaagga atcaaaggac tggatcgccc aaacaacgag aaagttctga atcacttctt 3360 ggttaagacc atgcagatgg ggaagaacct ggtcttcaac ttggatgctt aaagagctag 3420 taaatgctga ttaagtggtt attttcttaa ttgtgaggag aggatatgaa aaaaactgca 3480 acaggattca gaattaaatc attcagcgac gtcgagattg aagatttaga catggatctg 3540 ttattgaaaa tactgctgat tattataatc atcaaagaag cacgaactag gatagctttt 3600 gttccattag atttgggaac atggagagcc acaagtgtgg accaactgga ctgtccgatg 3660 caaggagatt tagtcaacca aggtactgat gcaattgagg tccggtatca aactgctgca 3720 tggggtttga aaaacagtgt agctgggaaa ctatgtgtca ctgcaaagtg gtccatcaca 3780 tgtgactacc gttggtatgg gtcgaaatac atctcgactc aaattgaata tctccccacc 3840 acacctgaaa tgtgcaaaga agctaagaga caattagatc gaggcgagct gcttagtcca 3900 catttctcct cagaaaattg cggctggaat aatgtcctga cagaatcaga aacctacaca 3960 accattgtgt ctcaccctgt gaaactggat gcttactccc tgactttgat tgacaacata 4020 tttgaaggag ggaaatgcca tgaagaagaa tgtccgtctc tccttcacca aggtttttgg 4080 atcgcagata aaaattccct aggtctttgt aaacaacttg actcacacat tggaagactt 4140 ttcaaaacag gcctgaggaa ctccatgggg acagtagtca gacaacaatg ggacattaat 4200 tctatatttc agccagagat agggcgtgaa aagaatttca atggagcctg tacaatggag 4260 ttttgtggcc atcaaggatt aagatttgca gatcgggaat ggttcaagat ccctgaacag 4320 gcaaaccaaa gccttaaaaa ggtcttcaaa gatttaccat cttgcggcac agacaatttg 4380 gttcatagtc atgacatcaa cacagatgtc aaagagataa cagagcatgt ccacgaagtt 4440 gcactccatg ctatctgcct tcaagaagtc agaagggcca aagacagcaa cacagtgtca 4500 gattggttat tgagtatgat gacaccattc agtgaaggtg cgggaccagt gtacagaatc 4560 cataatggga aattggaatc aacagtaggg ttttacagga aggtgctgat agagggtggg 4620 ggaactacgg agcagctggg gattggattt gacaaaaaac cgatcaaatg ggatcaattt 4680 gttgtcaaga caaatgacac cagagttcaa tctatgtaca atgggaacac cgtagtcgat 4740 ggagaaattc attgggcaaa aaatgtccta ggttctcata ttttggacga aattgcggcc 4800 ctagaattcg acattccact gattcaacac cctcacttag atggaatcct aatcaatgaa 4860 acacatgtta tcagctccca tcatccaaac ggacaagggg tgaactttgt agagagcgtc 4920 acacattggg cgggagggat atgggaatca gttggatcca gtgctattat cattgctgtc 4980 atattagtgg taggattcgt attggtcaag ttctgcatga ggttctctat gcctgtccga 5040 cgagaaagga gagaagaagg catgatgatg ttacaaagag cctgaagata aaaataaaaa 5100 tacctgcatc cgataagaaa ccaatcgaaa ttgcaacttt aataatggat agctgcttat 5160 gaaaaaaaca gctaacaggc atcatgtctt acgacgatac ctgggaagat ccccattggg 5220 gagattccac ggatgatgcc gacatacctg aatggttgtc tgatgatata gtgaggggaa 5280 atccattgaa tcaaaaagat tacagtctta actcccccct tatctcagac gctactatag 5340 cattaatgaa ctacttaaat gatggattga ctgaaaaacg ctttgagcga tccaatgcca 5400 attttgcatt gatacaaaag actctaaaaa cccaaagatg gaaacatcct gaagtacaca 5460 atcataaatg gatgggattg tggatcaaca aggaagaaac atgtaaagct tttgcgaacc 5520 tgattgatca gaccaacgca gatgtcctag agactgaggg gatactgcaa gcatttctga 5580 aaggatggat cgaccaaaca accagtgcgc caactaagac agggtggaca gccagacaaa 5640 gaagttatgg agccaaattc ttcttgcttc atcgaatgat cctattgatg aatgcacaat 5700 cagaagaaga aagagatctc ttacaaaaat cattgcattt gacaagggca atagaaaagg 5760 agctgattta cagaggagaa tcaacaacct taggcaagta cacattgacc agcgatttct 5820 tgctgttgca agatcaagag atcattctag acagaacatt cgtcctcatg ctcaaagaca 5880 ccctggtggg gcgaatgcaa acacttgctt gcttcatgaa tcgagaggac aaaaaatacg 5940 aagatggaat catcgagaaa atggaaaagc tctactggat tggagacaag atgttagcag 6000 acattgggga tgatgcatat gctgggataa aacttttgga acctatttgc aatctcagac 6060 tagcagagat ggccagaaca ttccgtccgt tggtgccaga atttccacac ttccgacagc 6120 atgttgaaac cgctgtacaa gaagagtccc aagaaaattt tcatcttagt gacttttatg 6180 actttgtcaa cgctgagcaa aatgtagaga cattactggc attctttggc tctttccgac 6240 attggggaca cccttacatc gattactttg aaggcttgaa gaagctaaac aaacaagtga 6300 cgttaccaaa agagatagat gaaacctatg cggaagcatt agctagtgat ttagcttaca 6360 tgatcttgag gaagcacttc aacaccaaga gaatatgggc ggtagcaaaa gaaagagtag 6420 caaatgatca cccccttaaa gatcacatca agaatgcgac ttggccgact ccaaaacaaa 6480 tcgatgactt tggagacaac tggcacaaat tgcctctaac aaagattttt gaaatcccag 6540 acttgataga tc 6552 //