ID AF418295; SV 1; linear; genomic RNA; STD; VRL; 3867 BP. XX AC AF418295; XX DT 15-NOV-2001 (Rel. 69, Created) DT 15-APR-2005 (Rel. 83, Last updated, Version 3) XX DE Chum salmon reovirus CSV segment 2, complete sequence. XX KW . XX OS Chum salmon reovirus CS OC Viruses; Riboviria; Reoviridae; Spinareovirinae; Aquareovirus. XX RN [1] RP 1-3867 RX PUBMED; 3819694. RA Winton J.R., Lannan C.N., Fryer J.L., Hedrick R.P., Meyers T.R., RA Plumb J.A., Yamamoto T.; RT "Morphological and biochemical properties of four members of a novel group RT of reoviruses isolated from aquatic animals"; RL J. Gen. Virol. 68(Pt 2):353-364(1987). XX RN [2] RP 1-3867 RA Rao S., Carner G.R., Chen W., Winton J.R.; RT "Complete genome sequence of the chum salmon virus"; RL Unpublished. XX RN [3] RP 1-3867 RA Rao S., Carner G.R., Chen W., Winton J.R.; RT ; RL Submitted (11-SEP-2001) to the INSDC. RL Entomology, Clemson University, Room 113, Long Hall, Box 340365, Clemson, RL SC 29634, USA XX DR MD5; efbae7adfad0ab3ab97f33d102e4a574. DR EuropePMC; PMC4284399; 25348270. XX FH Key Location/Qualifiers FH FT source 1..3867 FT /organism="Chum salmon reovirus CS" FT /segment="2" FT /mol_type="genomic RNA" FT /db_xref="taxon:173082" FT CDS 116..3838 FT /codon_start=1 FT /gene="VP2" FT /product="putative viral polymerase" FT /db_xref="GOA:Q8VA42" FT /db_xref="InterPro:IPR007097" FT /db_xref="InterPro:IPR012915" FT /db_xref="UniProtKB/Swiss-Prot:Q8VA42" FT /protein_id="AAL31497.1" FT /translation="MPGTYAPVPNVYHLLDHLTFRSSVVIPNSNFVGRIWSDYWALQDN FT IVIRVSPEGAKDADYCHNSNISPILSPLKTITEYGTLHPTIDKDASERGYPSARMASSF FT FKLASCQARQVKIDPTRFLEFLLVTASSPRVPSGVDSDQPNPWLPETSPALQAIWQIMQ FT RYKLNGNYYAPALVVNTGAVWWIPPPGRTNCVTVQFLITDLINLAVNAFATRLAPELEM FT CAVRVYLAAASTPNYAHALLDLKSIFPNLSLHSMYREGEFGGKCPRIEWTEPRSSYRFK FT WIGVTQLYEGLRPLTPSRDSKALLKMRDSGLEDVAKVIITMRRDHPRHTSDSVRFVRGV FT LSLISGMYLVRPPTMSVLREYSQTPQIEEPIPPDWWTGAVGNLSYFNDKAKGPLAHLYS FT VWLEAARQVVMDPSTHDPLTQAIYKTQFVTPRGGSSAALKQALVESKVELPDFSGTGVK FT RSSKIYQTAQLAHFSFQTLIPTIMGQVTLGIRNQVQRRARSIMPMSNPQQTVSVPHTLV FT ANYINKHMNRSTTSGSAVQDKVIPLLLYASTPPRTVINVDIKACDASITYAAFLAPICG FT AMHQGFDLGDPSLPFMNVPSSTQYDRRNPAAPYNRPVSGLQTMTQHLARLYQAGFSYKV FT DDPFSSGNSFVFPTTTFPSGSTATSTEHTANNGAMADFFLREYVPQHAKSSTLKFIVKD FT MNIQNNYVCQGDDGMLIIPDLGTKRISPEDLAELMELLEKYGRGFGWVYDIDSSDSAEY FT LKLYALFGARIPNISRHPPVGKEYASPETGEIWPSLVNIAMGSFYNGVTDCLEWRDWLK FT FSWAFACFASRGSFHPKTGPRVDAQYPVWSFIYMGLPPILLPGQTPFLTSVYMPAGDQG FT IFAILHQWRDYLTARATSDYPPLKRRHPVWHLADVPSLLSDLGVYRGYWAAQVSRRPEP FT SPDDADPASVEAMSAALSTYLLKDPVLRDRVVRGTNAWRRLTDTHPGRLPSRVPSLLDV FT PTRWIKAGRDADKPRPSAVAMMMKDIQRAASSSRKDFSRLLELYLHVHVHLGPPVPLAV FT DPEVPHVAGADILNDDHWYKVTSLGPIAQSTKKYFDATLFVGKTVSGLDVEAVDATLLR FT MSILGAEPEEYHAFLAGIGMSDAEAHRIASAISLADAQIVQLARTVNLAVPSSWMSLDF FT DTLIRSHSYPRQPGISDSSTLVRERASWINSVLRLLCATVAMSRVGPVCQATVSSVDGG FT VNQIVGCLRAWMRDV" XX SQ Sequence 3867 BP; 800 A; 1199 C; 921 G; 947 T; 0 other; gttttatcca ctatgtccgc gttgttcaac gcgctgccac ccgagctcta gcacctttca 60 ctcgcacttt caggttcaca accacttact gataagatat ttaccgccgc tgccgatgcc 120 tggcacgtac gcccccgttc ccaatgtata tcacctgctc gatcacctca cctttcgatc 180 ctccgtggtt atcccaaact ctaacttcgt cggtcgcata tggtcggatt attgggcctt 240 gcaggacaac atcgtcatta gggtcagtcc ggaaggtgcg aaagatgcgg actattgtca 300 caattcgaac atttccccta tcctgtcgcc tcttaagacg attacagagt atggtacgct 360 ccatcctacg attgacaagg atgcatcaga acgaggttac ccttcggccc ggatggcttc 420 atccttcttc aagctagctt cgtgccaggc acgacaggtg aagatcgacc caactcgttt 480 cctcgagttc ctactggtga ccgcgtcctc accccgggta ccttccggtg tcgattccga 540 tcagcccaat ccatggctcc ctgaaactag cccagcttta caggccatct ggcagataat 600 gcagcgctac aaactgaacg ggaactatta cgccccagcc ttggtcgtga acaccggagc 660 tgtttggtgg attccccctc ccggtcggac taactgcgtg acggtccagt ttctgattac 720 agatttaatc aacttggctg tgaacgcttt tgcgactcga cttgcccctg aactcgagat 780 gtgcgccgtt cgtgtgtact tggccgccgc ttccaccccc aactacgccc acgccctgct 840 cgacttgaaa tccatcttcc ccaacctcag tctccatagc atgtatcgtg aaggtgagtt 900 tggcggcaag tgtccgcgta ttgaatggac tgaacctcgc tcatcgtatc ggttcaagtg 960 gatcggtgtg acgcagctgt acgaaggcct gcggcccctg actccatctc gtgactcaaa 1020 ggcccttttg aaaatgcgtg actccggact ggaggacgtc gcgaaagtca tcattacgat 1080 gagacgtgat catccgaggc acacttccga ttccgtcaga ttcgtcaggg gcgtgctcag 1140 tctgatcagt ggtatgtatc tcgtgaggcc accgaccatg tccgtgctca gagagtactc 1200 acaaacccct cagatcgaag agcccatccc ccccgactgg tggactggag ccgtaggcaa 1260 cctctcgtac ttcaatgata aggctaaggg cccactggct catctctact cggtctggtt 1320 ggaagccgct cgtcaagtag ttatggaccc ctccacgcat gaccccttaa cccaagcgat 1380 ttacaagact cagttcgtga ctccgcgtgg cggatcaagt gcggctttga agcaggccct 1440 tgttgaaagt aaggtcgagt tgccagactt ctcaggcacc ggtgtgaaac gttcctcaaa 1500 aatctatcag accgctcaac tcgcgcattt tagcttccaa acgctcatcc ccactattat 1560 gggccaagtg actctcggga ttcgtaatca ggtccagcga cgtgcacgct ccattatgcc 1620 catgagcaat ccacaacaaa cggtctctgt accacatacc ttggtcgcta actacattaa 1680 caagcacatg aatcgctcca ccacttctgg tagtgcagtt caggacaagg tgatccccct 1740 gcttctctat gcatcgacgc ccccccgtac cgtgatcaac gtggacatta aggcttgtga 1800 cgcctccatc acatacgctg ccttcctggc gccgatctgc ggagcaatgc atcaaggttt 1860 cgatcttggg gacccgtcac tgccgttcat gaacgtcccc tcatccaccc aatacgatcg 1920 tcgcaatcca gccgctccat acaaccgacc cgtctccgga ctgcagacga tgacccaaca 1980 cctggcgcgt ctatatcaag ccggtttctc ctacaaggtg gatgacccat tctccagcgg 2040 caacagcttc gtgttcccca ccacgacttt cccctccggt tccactgcca cctccaccga 2100 gcacaccgcc aataatggag ccatggccga cttctttctt cgtgaatacg tcccccaaca 2160 tgcgaagtca agcaccctca agttcattgt taaagacatg aacattcaga ataactatgt 2220 ctgccaaggt gacgacggta tgctcatcat ccctgatctt ggtaccaaac gcatctcccc 2280 tgaagacctt gccgagctga tggaactgct tgagaagtat gggcggggct ttgggtgggt 2340 gtacgacatt gacagctctg actctgctga gtacctaaag ttgtatgctc tatttggtgc 2400 ccggataccc aacatcagtc gacacccgcc cgtcggtaag gaatatgcat ctcccgagac 2460 tggtgagatt tggccgtcac tcgtcaacat tgccatgggc tcgttctaca acggggttac 2520 cgattgcctt gagtggcgtg actggcttaa attcagttgg gcgtttgcat gcttcgcttc 2580 acgaggctcc tttcacccca agacgggccc ccgcgtcgat gctcagtacc ccgtgtggtc 2640 gttcatttac atgggccttc ctccgatcct tctccccggc cagactccat tccttacgtc 2700 agtgtacatg cctgcagggg accagggaat cttcgccatc ttgcaccaat ggcgcgacta 2760 cttgactgcg cgtgccacct ccgattaccc acctcttaag cgtcgccacc ccgtttggca 2820 tctcgcggat gtgccttcgc tgttgtcgga cttgggtgtg tatcgtggct actgggctgc 2880 acaagtgtcc cgtcgacctg aaccatctcc cgacgacgcc gatccggcca gtgtggaggc 2940 gatgagtgct gcattgtcca cgtacctctt gaaggaccca gtgttgcgtg accgagtcgt 3000 acgtggtacc aacgcttggc gacgattaac cgacacccat ccaggcaggt tgccctctcg 3060 tgttccctcc cttttggacg ttcccactcg ctggattaaa gccgggcgtg atgcagataa 3120 accgagaccc tccgctgtgg ccatgatgat gaaagacatc caacgtgctg cctcctctag 3180 tcgtaaggac ttctctcgtt tgctcgaact gtatctccac gtgcatgttc atctcgggcc 3240 tcccgtccca ttggctgttg accctgaagt tcctcatgtc gccggtgccg acatcctcaa 3300 cgatgatcat tggtataagg tcacctccct cggcccaata gctcagtcaa ccaagaaata 3360 cttcgatgct actcttttcg ttggcaagac tgtctccggt ctagacgttg aagcggttga 3420 tgccactctc ctacgtatgt ccattcttgg cgccgaacct gaagaatacc acgcctttct 3480 agccggcatt ggtatgtccg acgccgaagc ccatcgcatc gccagcgcca tttccctcgc 3540 cgacgctcag atagttcaac tcgctcgcac ggttaacttg gcagtcccct cgtcctggat 3600 gtccttggac tttgacacct tgatacgatc gcactcgtat ccaagacaac ccggcataag 3660 tgactcatcc actctagtcc gagaacgcgc gtcgtggatc aactcagtcc tgcgattgtt 3720 atgcgctacc gtcgctatgt cccgggtagg ccccgtttgc caagcgacag tttctagcgt 3780 ggatggagga gtgaatcaga tcgtcggctg cttgcgtgcc tggatgcggg atgtgtgagc 3840 cgcgcggcgg ctagtggttt aatcatc 3867 //