ID AF418294; SV 1; linear; genomic RNA; STD; VRL; 3947 BP. XX AC AF418294; XX DT 15-NOV-2001 (Rel. 69, Created) DT 29-MAY-2003 (Rel. 75, Last updated, Version 2) XX DE Chum salmon reovirus CSV segment 1, complete sequence. XX KW . XX OS Chum salmon reovirus CS OC Viruses; Riboviria; Reoviridae; Spinareovirinae; Aquareovirus. XX RN [1] RP 1-3947 RX PUBMED; 3819694. RA Winton J.R., Lannan C.N., Fryer J.L., Hedrick R.P., Meyers T.R., RA Plumb J.A., Yamamoto T.; RT "Morphological and biochemical properties of four members of a novel group RT of reoviruses isolated from aquatic animals"; RL J. Gen. Virol. 68(Pt 2):353-364(1987). XX RN [2] RP 1-3947 RA Rao S., Carner G.R., Chen W., Winton J.R.; RT "Complete genome sequence of the chum salmon virus"; RL Unpublished. XX RN [3] RP 1-3947 RA Rao S., Carner G.R., Chen W., Winton J.R.; RT ; RL Submitted (11-SEP-2001) to the INSDC. RL Entomology, Clemson University, Room 113, Long Hall, Box 340365, Clemson, RL SC 29634, USA XX DR MD5; bed26c3d12b2170de7982e4590319006. XX FH Key Location/Qualifiers FH FT source 1..3947 FT /organism="Chum salmon reovirus CS" FT /segment="1" FT /mol_type="genomic RNA" FT /db_xref="taxon:173082" FT CDS 14..3907 FT /codon_start=1 FT /gene="VP1" FT /product="putative guanylyl/methyl transferase" FT /db_xref="GOA:Q8VA43" FT /db_xref="InterPro:IPR010311" FT /db_xref="UniProtKB/Swiss-Prot:Q8VA43" FT /protein_id="AAL31496.1" FT /translation="MATVYGIQLTNRLNTATVRRPLRLRRYDSCITTFTTPNGISQLYR FT ALDFQPTSFQASILQTFPPLNAWSPSPQFVPDDLSLSQWKEWITERMRALATVLQRAHP FT LVANAGREVNPITIGLITSSFLNQRPIDGYLPFLFLARNARDPIAPLVTVDITFSDDTY FT VSRHVLYTPAGLKYLTLSSYDPTKPSSICTFGKHIPLYATAAFYPDETARLTILHRYNG FT GPPLIEHFDQPTYGPHVLIPALGSPEGYDTHLNICRLLLAEGLLDSFRLNASAGPSTAV FT ARIDQTYHVVMNGSPDDHTQLATRLSNLSLLAVQGCQMTVQVADHPTMSDVGGFLVRLQ FT GPGDPQRLIAYRTDQILIWQASPFPFGNNARYVRRPGRVPFTIGTTTYVPDTKTPLPFL FT PQYRQATVNKNNAQDSYELNVLPSLPIYSPFALTGGAFFQARDITGDPANVWPVNTLPG FT LPRDYFSIQSRQRRELLSRLRSHSDRSYVKDVHNISFASTVLNPVNNQIVLSEGFSMAY FT LGAASTHGTTDEPLIIEALKSGTVPGVPIPSKISQFGYDVANGSIMDATLAPPTGTFTF FT VYSDVDQVEDAGLSIVATNRAAVAVTNIALSMTTAGGLTVVKVNFPTPAFWTQLFRNHA FT TDARALYILKPLIVNSVEVFLLFVSRATAGNLVSSPALRQFLVQLFDRSTSLSEVMAHV FT PLLGDVDTGVTTLGFNACRLYSPDLPTVNITPEIQTLAYQLATIVPSTSFIAREDYDGA FT TAVTFYGKRTFLSRNRLDRLVDVPVPATNAINHQTRFTGSPVYQLFPTNPAPVTQLLWL FT ARTTGLYTASWPRLLLSRWLICGTGPECRILSLMPPATSVTMIDSRPPAESLAAFNPAM FT NQYIVGNFLDPAQWVANPHDSLTAIFSLGAAFAGAGQDLVVGLTAFLRLIQPSNVQHLW FT LQLNTTLTSTASLPGLIEIDTRTGQYIFNGGQRTEPYAAPDAILAAIRLVYPAATTSWL FT TASSTMDWTEYVIGLGSSMSLDDVSTMISYSGLTPILHIDLTQRPMDVPVPLVVGVQAV FT IHVAAPVQQTTVIGSMAGVQVFTADGVNAPSTIGPLAVVWDPVLSRWDLTITPNQPGVL FT DVVVDHNGVLLNRGSTTIALPPATIVITFPQAANRDFTNAGNDAAVVCDAFYRLGVFVS FT VNGAFQPVNPERAAIVTAANARVLHYVYDLSDNHVLMYVCDITDNNIGRNVALPLADIF FT QTLFPNNTPLLASPPYPSASGRLMLNGQLFVDLDPLPPVLPPGVQIQALSTAIEPARQT FT AEVPGGAYTYVVV" XX SQ Sequence 3947 BP; 779 A; 1291 C; 896 G; 981 T; 0 other; gttttatcac gacatggcga ccgtatatgg cattcaactc actaacagat tgaacaccgc 60 gactgtccga cgtccgctta ggctacgtcg atatgattcc tgcattacta cttttacaac 120 cccgaatggc atttcccaac tctatagagc attagatttc caacctacat cattccaggc 180 ctccatcctt caaacgtttc ctcccctcaa cgcctggagc ccttcaccac agttcgttcc 240 tgatgacctg agtctctccc agtggaagga atggatcacc gagcgcatgc gggcacttgc 300 aaccgttctg caacgagctc atcccctcgt ggctaacgct ggtcgtgaag tcaatcccat 360 cactatcggc ttgatcacgt cttcgttcct caaccagcgg ccgatcgatg gctatctccc 420 gttcctattt ctagctcgga acgcccgtga tccgattgcc cctcttgtca cggttgacat 480 cacgttctct gatgatacct acgtctctcg gcacgtgtta tacacacccg ctggcctcaa 540 gtacctaacg ctgtcgtcgt acgacccgac gaagccctct tcaatctgca ctttcggtaa 600 gcacatacca ctctacgcta cggctgcttt ctatcccgat gagacggcgc gtctgactat 660 cttgcatcgc tataatggag ggccgccatt gatcgagcat ttcgaccaac ccacctatgg 720 tccccacgtc ctgattcccg cgttagggtc acccgagggc tatgacacgc atctcaacat 780 ttgccgactg ttgttagcag agggtctcct cgactcgttt agactgaatg cttcagcagg 840 tccatcgacc gccgtcgctc gtatcgacca gacctatcac gtcgtcatga atggttcacc 900 cgatgatcac acgcagctgg ccacccgctt gtcgaatttg tctttattag cggttcaggg 960 ctgccagatg accgttcaag ttgcggatca tccgacgatg agtgacgtag gaggcttttt 1020 agtcagattg caaggacctg gagatcctca acgccttatc gcttaccgca ctgatcagat 1080 cctgatctgg caggccagcc cctttccgtt cggcaacaat gctcgctacg ttcgtcggcc 1140 cggtcgtgtc cccttcacca tcggcaccac tacttacgtt cccgacacga agaccccatt 1200 gccgttcctc ccgcagtata ggcaagccac cgtgaataag aacaatgctc aggattcgta 1260 cgagcttaac gtcctgccct ctctcccaat ctattcaccg ttcgccctca caggtggcgc 1320 tttcttccaa gcacgagaca tcaccggcga cccagccaac gtttggccag ttaacacgct 1380 gcccggtctt cctcgcgatt atttctccat tcaatcccga caacggcgtg aattactatc 1440 tcgtctgcgc tcgcattcgg accgttcata tgtgaaggac gttcacaaca tctcattcgc 1500 gtccaccgtt ttgaaccctg tgaacaatca aatcgtcctc tccgaaggat tctccatggc 1560 ctatctgggc gctgcctcca ctcacgggac gacggacgag cccctgatca ttgaagcgct 1620 taaaagtgga accgtccccg gtgtgcccat accgtctaag atatcacagt ttggctacga 1680 tgttgcgaac ggaagcatca tggatgcaac tctcgcccca cccactggca ccttcacgtt 1740 tgtgtactct gacgtcgatc aagtggaaga cgcgggccta tccattgtag ctacgaatcg 1800 cgccgctgtg gccgtgacca acattgccct gtccatgacg actgccggag gtttaactgt 1860 cgttaaggtt aattttccca ctcctgcctt ctggacccaa ttgttccgga accatgccac 1920 tgacgctcgt gctttgtaca tcctgaagcc tctaatcgtt aattcggttg aagtgttcct 1980 cctgttcgtc agtcgcgcta cagcgggcaa tctcgtatcc tcaccagccc tcaggcaatt 2040 cctcgtgcag ctattcgatc gctccacctc actgtctgag gtcatggccc acgtgccttt 2100 actgggggac gtcgatactg gtgtaactac tctcgggttc aacgcctgcc gtctatatag 2160 tccggacctg cctactgtta acatcacccc cgagattcag accctggcct accagctagc 2220 cactatcgtg ccttccactt cattcattgc gcgggaagat tatgacggcg ctacggctgt 2280 gacgttctac gggaaacgga cgtttctgtc gcgcaaccgg cttgatcgtc tggtggacgt 2340 gcctgtcccc gctaccaacg ccattaatca tcagacacgg ttcacaggct cacctgtcta 2400 ccagttgttc cccacgaacc ctgccccggt gactcagctc ctttggctag cgcgtacaac 2460 cggattatac acggccagct ggcccagatt gctcctcagt cgctggttga tttgtggtac 2520 cggcccggag tgtcgcattc tttcattaat gccaccagcc acctccgtga cgatgattga 2580 ctcccggcct cctgcagaat ctctcgccgc cttcaacccc gccatgaatc agtacatcgt 2640 ggggaacttc ttagacccgg ctcaatgggt ggcgaatcct cacgactccc tcacagccat 2700 cttctcattg ggcgctgcct tcgctggtgc gggtcaagac ttggtcgtcg gtctcactgc 2760 attcctgcgt ttgattcaac cgagcaacgt ccagcatctc tggctgcagc tgaacacaac 2820 actaacttca acggcatccc tgcccggtct tatcgagata gatacgcgga ctggacaata 2880 tattttcaac ggcggacaac ggaccgagcc ctacgccgcc ccagacgcta tccttgcggc 2940 catccggctc gtctatcctg ccgctacgac ctcctggctg acggcttcct ccacgatgga 3000 ctggactgag tacgtcatcg gcctcggctc ctccatgtca ctggatgacg tatccaccat 3060 gatctcgtac tcaggcttaa cgcccattct gcacattgac ctgacccagc ggcccatgga 3120 tgtgccagtg ccattagtgg taggagttca ggctgttatc cacgtggccg cgcccgtcca 3180 gcagacgacc gttattggtt ccatggccgg cgtccaggtt tttacagccg acggcgtaaa 3240 cgctccttcc accatcggac ctctagctgt cgtgtgggac ccggtcttgt cacgatggga 3300 tttaaccatc accccgaatc agccaggtgt cctcgacgtg gtagtggatc ataatggagt 3360 tcttctcaac cgtggttcca ctactattgc tttaccccct gccaccattg tcatcacctt 3420 tcctcaggcg gctaaccgcg acttcactaa cgccggtaat gacgctgctg tcgtgtgtga 3480 tgccttctac cgtctcggtg tttttgtcag tgtcaatggc gctttccagc ccgtaaaccc 3540 cgagcgcgca gcgatcgtca ccgcagcaaa cgcgcgtgtg ttacactacg tttacgacct 3600 ctccgataat catgtcctca tgtacgtttg cgacattaca gacaacaaca tcggtcgcaa 3660 cgtcgctctc ccattggcgg acatattcca gaccctgttc cccaacaaca cccccctgct 3720 cgcatcgccc ccctacccgt cggcgtctgg tcgcctcatg ctgaatggcc aactgttcgt 3780 ggacctggac ccacttcctc ccgtactccc acctggcgtt cagatccaag ccttatccac 3840 cgccatcgaa cccgcgcgtc agactgctga agtgcctggt ggcgcttaca cgtacgtggt 3900 cgtttaatct tggtgggcgc cccgcggttc gcgtcgtgtt aatcatc 3947 //