ID AF369924; SV 1; linear; genomic RNA; STD; VRL; 2835 BP. XX AC AF369924; XX DT 27-JUN-2001 (Rel. 68, Created) DT 22-JAN-2002 (Rel. 70, Last updated, Version 2) XX DE Sugarcane yellow leaf virus isolate SCYLV-G2 protease and RNA-dependent RNA DE polymerase genes, partial cds; capsid protein and movement protein genes, DE complete cds; and aphid transmission factor gene, partial cds. XX KW . XX OS Sugarcane yellow leaf virus OC Viruses; Riboviria; Luteoviridae; Polerovirus. XX RN [1] RP 1-2835 RX PUBMED; 11773408. RA Moonan F., Mirkov T.E.; RT "Analyses of genotypic diversity among North, South, and Central American RT isolates of sugarcane yellow leaf virus: evidence for Colombian origins and RT for intraspecific spatial phylogenetic variation"; RL J. Virol. 76(3):1339-1348(2002). XX RN [2] RP 1-2835 RA Moonan F., Mirkov T.E.; RT ; RL Submitted (12-APR-2001) to the INSDC. RL Plant Pathology, The Texas A & M Agricultural Experiment Station and Texas RL A & M University System, TAES-2415 East Highway 83, Weslaco, TX 78596, USA XX DR MD5; a7e3d87b8fa073d44268e61f0703d275. XX FH Key Location/Qualifiers FH FT source 1..2835 FT /organism="Sugarcane yellow leaf virus" FT /isolate="SCYLV-G2" FT /mol_type="genomic RNA" FT /country="Guatemala: Santa Lucia" FT /clone="CP92-1654" FT /db_xref="taxon:94290" FT CDS <1..677 FT /codon_start=3 FT /product="protease" FT /note="ORF1" FT /db_xref="GOA:Q91L57" FT /db_xref="InterPro:IPR000382" FT /db_xref="InterPro:IPR018019" FT /db_xref="UniProtKB/TrEMBL:Q91L57" FT /protein_id="AAK66830.1" FT /translation="DIADYAEEVYEKTLAEPKVWKPASGKYWWEMAEEEDDFVVEAKSP FT PPDKPVENATAKEQTPASTVEKAMVADQPTPDQGNEPSGADHLKTPESTPLKQDESTKE FT LLNNIVSQLIQKIDLSSIATRVEEKLLRQAQNKQQQNGGKKSPRKRKTSNTSSKPHTNG FT KSPPVTSQGSGNAANSPRYTIPQNRRAHNGESASSQSTQKWRPKSPVSGGPPSAPKPKR FT QV" FT CDS <218..1936 FT /codon_start=1 FT /product="RNA-dependent RNA polymerase" FT /note="ORF2; produced by predicted -1 translational FT frameshift of ORF1 gene product" FT /note="ribosomal slippage" FT /db_xref="GOA:Q91L56" FT /db_xref="InterPro:IPR001795" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:Q91L56" FT /protein_id="AAK66831.1" FT /translation="SADSRPGKRAKWRRPLKNTGIHPAQARRIYKXVAQQHRLAVDSKD FT RPELHCNEGGGETAASGPEQTAAERREEVAQKTQDLEHFFQAAYKWEESTSDIPGFRKC FT GKLPALYHPPKPKSTQWGERIISEHPEMASKVAGFGWPSFGAQAEETSLRLQAARWLKR FT AESAEKPTEKQRKLVIDRVVKAYEPCRTNAPHTSSSGSLIWSDFLKDFKEAVNSLELDA FT GIGLPYKLLHKDTHRQMVEDPKFLPLLTRLTWNRLQKMSQVDFQEMTPEQLVREGLCDP FT IRLFVKGEPHKQAKLDEGRYRLIMSVSLVDQLVARVLFQAQNKRDIALWRAIPSKPGFG FT LSTDREAREFIESLSKTVGCSPAEVIHGWRNKIVPTDCSGFDWSVADWMLEDDMEVRNL FT LTINNNELTRRLRACWLKCITNSVICTSGGVLYAQTHPGVQKSGSYNTSSSNSRIRVMA FT AFHCGADWAIAMGDDALESPNSNINAYQKLGFKVEVASQLEFCSHVFEQEDLARPLNVN FT KMLYRLIFGYNPACGNAEVLCNYLQAVASVLNELRHDPQLVATLHEWLVPGAATK" FT CDS 2131..2721 FT /codon_start=1 FT /product="capsid protein" FT /note="ORF3" FT /db_xref="GOA:Q91L55" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:Q91L55" FT /protein_id="AAK66833.1" FT /translation="MNTGANRSRRNVRRRANRRRQTRPVVVVRAPPGPRRVRRRRARVG FT GNAVRGPGGRSNRDVLTFMVDDLKANSTGILKFGPNLSQYAAFNNGLLKAYHEYKITSL FT TIQYNSCSSDATPGAIALEVDTSCSQTTTGSKITSFPVKRNAKKVFPAPFIRGKDFMTT FT SADQFWLLYKGNGDSSLAGQFVCRFECLFQNPK" FT CDS 2131..>2835 FT /codon_start=1 FT /transl_except=(pos:2719..2721,aa:OTHER) FT /product="aphid transmission factor" FT /note="ORF5; produced by translational readthrough of the FT stop codon of ORF 3; readthrough occurs at a frequency of FT about 25%" FT /db_xref="GOA:Q91L54" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:Q91L54" FT /protein_id="AAK66834.1" FT /translation="MNTGANRSRRNVRRRANRRRQTRPVVVVRAPPGPRRVRRRRARVG FT GNAVRGPGGRSNRDVLTFMVDDLKANSTGILKFGPNLSQYAAFNNGLLKAYHEYKITSL FT TIQYNSCSSDATPGAIALEVDTSCSQTTTGSKITSFPVKRNAKKVFPAPFIRGKDFMTT FT SADQFWLLYKGNGDSSLAGQFVCRFECLFQNPKXVGDAPPTPTPTPTPPAPTPAPAPKF FT LGYQGVPNNIVKT" FT CDS 2162..2614 FT /codon_start=1 FT /product="movement protein" FT /note="ORF4" FT /db_xref="InterPro:IPR001964" FT /db_xref="UniProtKB/TrEMBL:Q91L53" FT /protein_id="AAK66832.1" FT /translation="MSEDALTVVDRLGQWSWSGLPQDLDEYDDVEHVLEETLCEDREEE FT ATGMFSLSWLTISKPTQPGSSNSDRTYLSTQRSTMAYSKPTMSIKSQVSLFSITHAPPT FT QLQVQSHLKWIHPAPKQQQAPRLLASPSRGTPRKSSQPPSSGGKIS" XX SQ Sequence 2835 BP; 792 A; 768 C; 690 G; 578 T; 7 other; cagacattgc tgattacgcc gaggaggtgt atgagaaaac ccttgcagag cctaaagtgt 60 ggaaacctgc cagcggtaaa tactggtggg aaatggctga agaagaggat gattttgtcg 120 ttgaggcaaa gtcacctccc cctgataaac ctgttgagaa cgctacagca aaagagcaga 180 ctccagcttc gactgttgag aaagctatgg ttgctgatca gccgactcca gaccagggaa 240 acgagccaag tggcgccgac cacttaaaaa caccggaatc caccccgctc aagcaagacg 300 aatctacaaa rgagttgctc aacaacatcg tctcgcagtt gattcaaaag atcgacctga 360 gctccattgc aacgagggtg gaggagaaac tgctgcgtca ggcccagaac aaacagcagc 420 agaacggagg gaagaagtcg cccagaaaac gcaagacctc gaacacttct tccaagccgc 480 atacaaatgg gaagagtcca ccagtgacat cccagggttc aggaaatgcg gcaaactccc 540 cgcgctatac catcccccaa aaccgaagag cacacaatgg ggagagcgca tcatctcaga 600 gcacccagaa atggcgtcca aagtcgccgg tttcgggtgg ccctccttcg gcgcccaagc 660 cgaagagaca agtctgagac tccaagcggc acgctggctt aaacgagctg agtcagcgga 720 aaagccgaca gaaaaacaac gcaagctcgt cattgatcgt gtggtcaagg catatgaacc 780 gtgtagaact aatgccccac acaccagctc ctctggcagc ctcatctggt ccgacttctt 840 gaaagatttc aaggaggctg tcaactcact agaactcgat gcaggaatag gtctcccata 900 caagcttctt cacaaagaca ctcatcgtca gatggttgaa gaccccaaat tcctgccgct 960 cctgacgcga ttgacctgga accgtttaca gaagatgtcc caggttgact tccaggagat 1020 gactcctgaa caactagtga gagaaggatt gtgcgatccg attcgtttgt tcgtcaaagg 1080 agaaccgcac aagcaggcaa aacttgatga agggcgctac cgcctcatca tgtcagtctc 1140 gctggtagat caactggtag cccgggtttt gtttcaggca caaaataaaa gagatatagc 1200 tttgtggaga gctatccctt caaagcccgg tttcggctta tccacagaca gggaagcacg 1260 cgaattcatt gaatccctgt ccaagacagt agggtgttcc ccagcagarg tcattcatgg 1320 ctggaggaac aagatcgtac ccaccgactg ytccggtttt gactggtcag tcgccgactg 1380 gatgctcgaa gacgacatgg aagtgagaaa tcttctcaca atcaacaaca acgagctrac 1440 ccgccgcctc agggcgtgct ggttgaagtg catcacaaac tctgtgattt gcacatccgg 1500 cggtgtcttg tacgcccaaa ctcatcctgg agtgcaaaaa tctggatctt acaacacgag 1560 ttcatccaat tccaggattc gagtaatggc cgcttttcat tgcggcgcag attgggcgat 1620 agccatggga gacgatgcac ttgagtctcc aaactccaac atcaacgcgt atcaaaagtt 1680 ggggttcaaa gtcgaggttg cctcacagct agaattttgc tcacacgtct ttgagcagga 1740 ggacctcgcc aggccrttga acgtaaacaa aatgctttat cgtttgatct ttggatacaa 1800 tccggcctgt ggcaacgcgg aggtattgtg caattacctc caagctgtgg cttctgttct 1860 caacgagctt cgccatgatc cacagctagt tgctaccctc catgagtggc tggtycctgg 1920 cgccgccaca aaataaatac ggaggggcat cccgagccac catataggtt gcaagagtgg 1980 aacgggaagt cctatagata agccgcgcga ttctggatta caaacttcta gcgggagttc 2040 tcatcggtgt tctcaycgca atccccctag tgatcatagc ggcttacctg atattcctca 2100 aaatcagtgc acacatccga gcgatagtga atgaatacgg gcgctaaccg ctcacgaagg 2160 aatgtcagaa gacgcgctaa ccgtcgtaga cagactcggc cagtggtcgt ggtccgggct 2220 cccccaggac ctagacgagt acgacgacgt agagcacgtg ttggaggaaa cgctgtgcga 2280 ggaccgggag gaagaagcaa ccgggatgtt ctcactttca tggttgacga tctcaaagcc 2340 aactcaaccg ggatcctcaa attcggaccg aacttatctc agtacgcagc gttcaacaat 2400 ggcttactca aagcctacca tgagtataaa atcacaagtc tcactattca gtataactca 2460 tgctcctccg acgcaactcc aggtgcaatc gcacttgaag tggatacatc ctgctcccaa 2520 acaacaacag gctccaagat tactagcttc cccgtcaaga ggaacgccaa gaaagtcttc 2580 ccagccccct tcatcagggg gaaagatttc atgactacgt cagctgacca attttggttg 2640 ctgtacaaag ggaatggaga ctcgagccta gcaggacaat tcgtctgccg atttgaatgc 2700 cttttccaga atcccaaata ggtaggcgac gctcccccaa cacccacccc aacaccaacc 2760 ccacctgctc cgaccccggc accggctccc aagtttcttg gataccaagg agtgccgaac 2820 aacatcgtga aaaca 2835 //