ID AF332868; SV 1; linear; genomic RNA; STD; VRL; 6383 BP. XX AC AF332868; XX DT 17-MAR-2001 (Rel. 67, Created) DT 04-APR-2012 (Rel. 112, Last updated, Version 2) XX DE Tomato mosaic virus isolate Queensland, complete genome. XX KW . XX OS Tomato mosaic virus OC Viruses; Riboviria; Virgaviridae; Tobamovirus. XX RN [1] RP 1-6383 RA Lee S.M., Smith G.A., Polkinghorne I.G.; RT "Complete nucleotide sequence of tomato mosaic virus Australia isolate"; RL Unpublished. XX RN [2] RP 1-6383 RA Lee S.M., Smith G.A., Polkinghorne I.G.; RT ; RL Submitted (29-DEC-2000) to the INSDC. RL Department of Biochemistry, The University of Queensland, QABC, Gehrmann RL Labs, The University of Queensland, St. Lucia, Brisbane, QLD 4072, RL Australia XX DR MD5; bce0f27ab7b973bfa6f0e4cc4c1daee4. DR EuropePMC; PMC4498111; 26159525. DR EuropePMC; PMC5282660; 28137291. DR EuropePMC; PMC5854769; 29545304. DR RFAM; RF01072; TMV_UPD-PK3. DR RFAM; RF01077; TLS-PK2. DR RFAM; RF01115; TMV_UPD-PK2. XX FH Key Location/Qualifiers FH FT source 1..6383 FT /organism="Tomato mosaic virus" FT /host="Lycopersicon esculentum cv. Grosse Lisse" FT /isolate="Queensland" FT /mol_type="genomic RNA" FT /country="Australia:Queensland" FT /db_xref="taxon:12253" FT CDS 72..4922 FT /codon_start=1 FT /transl_except=(pos:3420..3422,aa:OTHER) FT /product="184 kDa replicase" FT /note="involved in genomic replication; contains FT readthrough stop codon" FT /db_xref="GOA:Q77IX3" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:Q77IX3" FT /protein_id="AAK17989.1" FT /translation="MAYTQTATSSALLETVRGNNTLVNDLAKRRLYDTAVDEFNARDRR FT PKVNFSKVVSEEQTLIATKAYPEFQITFYNTQNAVHSLAGGLRSLELEYLMMQIPYGSL FT TYDIGGNFASHLFKGRAYVHCCMPNLDVRDIMRHEGQKDSIELYLSRLERGNKHVPNFQ FT KEAFDRYAEMPNEVVCHDTFQTCRHSQECYTGRVYAIALHSIYDIPADEFGAALLRKNV FT HVCYAAFHFSENLLLEDSHVNLDEINACFQRDGDRLTFSFASESTLNYSHSYSNILKYV FT CKTYFPASNREVYMKEFLVTRVNTWFCKFSRIDTFLLYKGVAHKGVDSEQFYKAMEDAW FT HYKKTLAMCNSERILLEDSSSVNYWFPKMRDMVIVPLFDISLETSKRTRKEVLVSKDFV FT YTVLNHIRTYQAKALTYSNVLSFVESIRSRVIINGVTARSEWDVDKSLLQSLSMTFFLH FT TKLAVLKDDLLISKFALGPKTVSQHVWDEISLAFGNAFPSIKERLINRKLIKITENALE FT IRVPDLYVTFHDRLVSEYKMSVDMPVLDIRKKMEETEEMYNALSELSVLKNSDKFDVDV FT FSQMCQSLEVDPMTAAKVIVAVMSNESGLTLTFEQPTEANVALALQDSEKASDGALVVT FT SRDVEEPSIKGSMARGELQLAGLSGDVPESSYTRSEEIESLEQFHMATASSLIHKQMCS FT IVYTGPLKVQQMKNFIDSLVASLSAAVSNLVKILKDTAAIDLETRQKFGVLDVASKRWL FT VKPSAKNHAWGVVETHARKYHVALLEHDEFGIITCDNWRRVAVSSESVVYSDMAKLRTL FT RRLLKDGEPHVSSAKVVLVDGVPGCGKTKEILSRVNFEEDLILVPGRQAAEMIRRRANA FT SGIIVATKDNVRTVDSFLMNYGKGARCQFKRLFIDEGLMLHTGCVNFLVEMSLCDIAYV FT YGDTQQIPYINRVTGFPYPAHFAKLEVDEVETRRTTLRCPADVTHFLNQRYEGHVMCTS FT SEKKSVSQEMVSGAASINPVSKPLKGKILTFTQSDKEALLSRGYADVHTVHEVQGETYA FT DVSLVRLTPTPVSIIARDSPHVLVSLSRHTKSLKYYTVVMDPLVSIIRDLERVSSYLLD FT MYKVDAGTQXQLQVDSVFKNFNLFVAAPKTGDISDMQFYYDKCLPGNSTLLNNYDAVTM FT KLTDISLNVKDCILDMSKSVAAPKDVKPTLIPMVRTAAEMPRQTGLLENLVAMIKRNFN FT SPELSGVVDIENTASLVVDKFFDSYLLKEKRKPNKNFSLFSRESLNRWIAKQEQVTIGQ FT LADFDFVDLPAVDQYRHMIKAQPKQKLDLSIQTEYPALQTIVYHSKKINAIFGPLFSEL FT TRQLLDSIDSSRFLFFTRKTPAQIEDFFGDLDSHVPMDVLELDVSKYDKSQNEFHCAVE FT YEIWRRLGLEDFLAEVWKQGHRKTTLKDYTAGIKTCLWYQRKSGDVTTFIGNTVIIASC FT LASMLPMEKLIKGAFCGDDSLLYFPKGCEYPDIQQAANLMWNFEAKLFKKQYGYFCGRY FT VIHHDRGCIVYYDPLKLISKLGAKHIKDWDHLEEFRRSLCDVAESLNNCAYYTQLDDAV FT GEVHKTAPPGSFVYKSLVKYLSDKVLFRSLFLDGSSC" FT CDS 72..3422 FT /codon_start=1 FT /product="126 kDa replicase" FT /note="involved in genomic replication" FT /db_xref="GOA:Q991T0" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:Q991T0" FT /protein_id="AAK17988.1" FT /translation="MAYTQTATSSALLETVRGNNTLVNDLAKRRLYDTAVDEFNARDRR FT PKVNFSKVVSEEQTLIATKAYPEFQITFYNTQNAVHSLAGGLRSLELEYLMMQIPYGSL FT TYDIGGNFASHLFKGRAYVHCCMPNLDVRDIMRHEGQKDSIELYLSRLERGNKHVPNFQ FT KEAFDRYAEMPNEVVCHDTFQTCRHSQECYTGRVYAIALHSIYDIPADEFGAALLRKNV FT HVCYAAFHFSENLLLEDSHVNLDEINACFQRDGDRLTFSFASESTLNYSHSYSNILKYV FT CKTYFPASNREVYMKEFLVTRVNTWFCKFSRIDTFLLYKGVAHKGVDSEQFYKAMEDAW FT HYKKTLAMCNSERILLEDSSSVNYWFPKMRDMVIVPLFDISLETSKRTRKEVLVSKDFV FT YTVLNHIRTYQAKALTYSNVLSFVESIRSRVIINGVTARSEWDVDKSLLQSLSMTFFLH FT TKLAVLKDDLLISKFALGPKTVSQHVWDEISLAFGNAFPSIKERLINRKLIKITENALE FT IRVPDLYVTFHDRLVSEYKMSVDMPVLDIRKKMEETEEMYNALSELSVLKNSDKFDVDV FT FSQMCQSLEVDPMTAAKVIVAVMSNESGLTLTFEQPTEANVALALQDSEKASDGALVVT FT SRDVEEPSIKGSMARGELQLAGLSGDVPESSYTRSEEIESLEQFHMATASSLIHKQMCS FT IVYTGPLKVQQMKNFIDSLVASLSAAVSNLVKILKDTAAIDLETRQKFGVLDVASKRWL FT VKPSAKNHAWGVVETHARKYHVALLEHDEFGIITCDNWRRVAVSSESVVYSDMAKLRTL FT RRLLKDGEPHVSSAKVVLVDGVPGCGKTKEILSRVNFEEDLILVPGRQAAEMIRRRANA FT SGIIVATKDNVRTVDSFLMNYGKGARCQFKRLFIDEGLMLHTGCVNFLVEMSLCDIAYV FT YGDTQQIPYINRVTGFPYPAHFAKLEVDEVETRRTTLRCPADVTHFLNQRYEGHVMCTS FT SEKKSVSQEMVSGAASINPVSKPLKGKILTFTQSDKEALLSRGYADVHTVHEVQGETYA FT DVSLVRLTPTPVSIIARDSPHVLVSLSRHTKSLKYYTVVMDPLVSIIRDLERVSSYLLD FT MYKVDAGTQ" FT CDS 4906..5700 FT /codon_start=1 FT /product="30 kDa movement protein" FT /note="involved in cell-to-cell movement of virus in FT plants" FT /db_xref="GOA:Q991S9" FT /db_xref="InterPro:IPR001022" FT /db_xref="InterPro:IPR028919" FT /db_xref="UniProtKB/TrEMBL:Q991S9" FT /protein_id="AAK17990.1" FT /translation="MALVVKGKVNINEFIDLSKSEKLLPSMFTPVKSVMVSKVDKIMVH FT ENESLSEVNLLKGVKLIEGGYVCLVGLVVSGEWNLPDNCRGGVSVCMVDKRMERADEAT FT LGSYYTAAAKKRFQFKVVPNYGITTKDAEKNIWQVLVNIKNVKMSAGYCPLSLEFVSVC FT IVYKNNIKLGLREKVTSVNDGGPMELSEEVVDEFMENVPMSVRLAKFRTKSSKRGPKNN FT NNLGKGRSGGRSKPKSFDEVEKEFDNLIEDEAETSVADSDSY" FT CDS 5703..6182 FT /codon_start=1 FT /product="17.5 kDa coat protein" FT /note="involved in virus assembly and systemic spread of FT virus in plants" FT /db_xref="GOA:Q780A8" FT /db_xref="InterPro:IPR001337" FT /db_xref="InterPro:IPR036417" FT /db_xref="UniProtKB/TrEMBL:Q780A8" FT /protein_id="AAK17991.1" FT /translation="MSYSITSPSQFVFLSSVWADPIELLNVCTNSLGNQFQTQQARTTV FT QQQFSEVWKPFPQSTVRFPGDVYKVYRYNAVLDPLITALLGAFDTRNRIIEVENQQSPT FT TAETLDATRRVDDATVAIRSAINNLVNELVRGTGLYNQNTFESMSGLVWTSAPAS" XX SQ Sequence 6383 BP; 1904 A; 1182 C; 1479 G; 1818 T; 0 other; gtatttttac aacaattacc aacaacaaca acaaacaaca acaacattac attttacatt 60 ctacaactac aatggcatac acacaaacag ccacatcgtc cgctttgctt gagaccgtcc 120 gaggtaacaa taccttggtc aacgatcttg caaagcggcg tctatatgac acagcggtag 180 atgaatttaa tgctagggac cgcaggccta aagtcaattt ttccaaagta gtaagcgaag 240 aacagacgct tattgcaacc aaagcctacc cagaattcca aattacattc tacaacacgc 300 agaatgctgt gcattccctt gcaggcggtc tccgatcatt agaattggaa tatctgatga 360 tgcaaattcc ctacggatca ttgacatatg atatcggagg taattttgca tctcatctgt 420 tcaaagggcg agcatacgtt cactgctgta tgccgaatct agatgtccgc gacataatgc 480 ggcacgaggg ccaaaaggac agtattgaac tatacctttc taggctcgag aggggcaaca 540 aacatgtccc aaacttccaa aaggaagctt tcgacagata cgctgaaatg ccaaacgaag 600 tagtctgtca cgatactttc caaacgtgta ggcattctca agaatgttac acgggaagag 660 tgtatgctat tgctttgcat agtatatacg atatacctgc cgacgagttc ggcgcggcac 720 tgctgagaaa gaatgtacat gtatgttatg ccgctttcca cttttccgag aatttacttc 780 tcgaagattc acacgtcaac ctcgatgaga tcaatgcatg tttccaaaga gatggagaca 840 ggttgacttt ttcctttgca tctgagagta ctcttaatta tagtcatagt tattctaata 900 ttcttaagta tgtttgcaaa acttacttcc cagcctctaa tagagaggtt tacatgaagg 960 agtttttagt aactagagtt aatacctggt tttgtaaatt ttctagaata gatactttct 1020 tattgtacaa aggtgtagcg cataagggtg tagatagtga gcagttttac aaggctatgg 1080 aagacgcatg gcactacaaa aagactcttg cgatgtgcaa cagtgaaaga atcttgttag 1140 aggattcttc atcagttaat tactggtttc caaaaatgag ggatatggtg atagttccac 1200 tatttgacat atctctcgag actagtaaaa gaacacgcaa agaggtctta gtttcaaagg 1260 actttgttta tacagtgtta aatcacattc gtacgtacca ggccaaagcg cttacttact 1320 ccaacgtgtt atctttcgtc gaatcaattc gttcgagagt gatcattaac ggggttactg 1380 ccaggtctga gtgggatgtc gataaatcat tattacagtc cttgtcgatg acgttcttcc 1440 tacataccaa gcttgccgtt ctgaaagacg atcttttgat tagcaagttt gcacttggac 1500 caaaaactgt ctcacaacat gtgtgggatg agatttccct agctttcggc aatgctttcc 1560 catcgatcaa ggaaagattg ataaaccgga aactgatcaa aattacggag aatgcgttag 1620 agatcagggt gcccgatctt tatgtcactt tccatgatag gttagtttct gagtacaaaa 1680 tgtcagtgga catgccggtg ctagacatta ggaaaaagat ggaagaaact gaggaaatgt 1740 acaatgcact gtccgaactg tctgtactta aaaattcaga caagttcgat gttgatgttt 1800 tttcccagat gtgccaatct ttagaagttg atccaatgac tgcagcaaag gtaatagtag 1860 cagttatgag caacgagagt ggtcttactc tcacgtttga acagcccacc gaagctaatg 1920 ttgcgctagc attgcaagat tctgaaaagg cttctgatgg ggcgttggta gttacctcaa 1980 gagatgttga ggaaccgtcc ataaagggtt cgatggcccg tggtgagtta caattggccg 2040 gattatctgg cgacgttcct gaatcttcat acactaggag cgaggagatt gagtctctcg 2100 agcagtttca tatggcaaca gctagttcgt taattcataa gcagatgtgt tcgatcgtgt 2160 acacgggccc tcttaaagtt caacaaatga aaaactttat agacagcctg gtagcctcgc 2220 tctctgctgc ggtgtcgaat ctagtgaaga tcctaaaaga tacagccgcg attgaccttg 2280 aaactcgtca aaagttcgga gttctggatg ttgcttcgaa aaggtggcta gttaaaccat 2340 ccgcaaagaa ccatgcatgg ggggttgttg agactcatgc gaggaaatat cacgtcgcat 2400 tactggagca cgatgaattt ggcattatta cgtgcgataa ctggcgacgg gtggctgtga 2460 gttctgagtc ggtagtatat tctgatatgg ctaaactcag gactctgaga agattgctca 2520 aagatggaga accacacgtt agttcagcaa aggtggtttt ggtggatggc gttccagggt 2580 gcgggaagac aaaggaaatt ctttcgagag ttaatttcga agaagatcta attcttgtcc 2640 ctggtcgtca agctgccgag atgatcagaa gaagagctaa tgcgtcgggc ataatagtgg 2700 ctacaaagga taatgtgcgc accgtcgatt catttttgat gaattacggg aaaggggcac 2760 gctgtcagtt caaaagattg ttcatagacg aaggtttgat gctgcatact ggttgtgtga 2820 atttcttggt tgaaatgtct ctgtgcgata ttgcatatgt ttatggagac acccaacaaa 2880 ttccgtacat caacagagta actggtttcc cgtaccctgc gcactttgca aaattggagg 2940 tcgacgaagt cgaaacaaga agaactactc ttcgctgtcc ggctgatgtc acacacttcc 3000 taaatcaaag gtatgaagga cacgtaatgt gcacgtcttc tgaaaagaaa tcagtttccc 3060 aggaaatggt tagtggggct gcgtctatca atcctgtgtc caagccgctt aaagggaaaa 3120 ttttgacttt cacacagtct gacaaggagg cccttctctc aaggggctac gcagatgtcc 3180 atactgtaca tgaggtacaa ggtgagactt atgcagacgt atcgttagtt cgactaacac 3240 ctacgcctgt atctatcatc gcaagagaca gtccgcatgt tctggtctcg ttgtcaagac 3300 acacaaaatc cctaaagtac tacaccgttg tgatggatcc tttagttagt atcattagag 3360 atttagaacg ggttagtagt tacttattag acatgtacaa agtagatgca ggtactcaat 3420 agcaattaca ggtcgactct gtgtttaaaa atttcaatct ttttgtagca gctccaaaga 3480 ctggagatat atctgatatg caattttact atgataagtg tcttcctggg aacagcacgt 3540 tgttgaacaa ctacgacgct gttaccatga aattgactga catttctctg aatgtcaaag 3600 attgcatatt agatatgtct aagtctgtag ctgctccgaa agatgtcaaa ccaactttaa 3660 taccgatggt acgaacggcg gcagaaatgc ctcgccagac tggactgttg gaaaatctag 3720 ttgcgatgat taaaagaaat tttaattcac cagagttgtc cggagtagtt gatattgaaa 3780 atactgcatc tttagtggta gataagtttt ttgatagtta tttacttaag gaaaaaagaa 3840 aaccaaacaa aaatttttca ctgtttagta gagagtctct caataggtgg atagcaaagc 3900 aagaacaagt cacaattggt cagttggccg attttgattt tgtggatctt ccagccgttg 3960 atcagtacag gcatatgatt aaagcgcaac cgaagcagaa actggatctg tcaattcaga 4020 cagaatatcc agcgttgcaa acgattgtgt atcattcaaa gaaaatcaac gcaatatttg 4080 gtcctctttt cagtgagctt acaaggcaat tacttgacag tattgactca agcagattct 4140 tgttctttac gagaaagaca ccggctcaga tcgaagattt cttcggagat ctagacagtc 4200 atgtcccaat ggacgtactt gagttggatg tttcgaagta tgataagtct caaaacgagt 4260 ttcattgtgc tgttgagtac gaaatctgga ggagactggg tctggaggat ttcttggcag 4320 aagtgtggaa acaagggcat agaaaaacca ccctgaaaga ttacactgct ggtataaaaa 4380 cgtgtttatg gtaccagaga aagagtggtg atgttacaac ttttatcggt aataccgtca 4440 tcattgcttc gtgtcttgca tcaatgctcc cgatggaaaa attgataaaa ggagccttct 4500 gcggagatga cagtttgttg tactttccta agggttgtga gtatcccgat atacaacaag 4560 ctgccaatct aatgtggaat tttgaggcca aactgttcaa gaagcaatat gggtacttct 4620 gcgggaggta cgtgattcat cacgatagag gttgcatagt atactacgac cctttgaagc 4680 tgatttcgaa acttggtgct aaacacatca aggattggga tcatttggag gagttcagaa 4740 gatccctctg tgatgttgct gagtcgttga acaattgcgc gtattacaca caattggacg 4800 acgctgttgg ggaggttcat aaaaccgccc cacctggttc gtttgtttat aagagtttag 4860 ttaagtattt gtcagataaa gttttgttta gaagtttatt tcttgatggc tctagttgtt 4920 aaaggtaagg taaatattaa tgagtttatc gatctgtcaa agtctgagaa acttctcccg 4980 tcgatgttca cgcctgtaaa gagtgttatg gtttcaaagg ttgataagat tatggtccat 5040 gaaaatgaat cattgtctga agtaaatctc ttaaaaggtg taaaacttat agaaggtggg 5100 tatgtttgct tagtcggtct tgttgtgtcc ggtgagtgga atttaccaga taattgccgt 5160 ggtggtgtga gtgtctgcat ggttgacaag agaatggaaa gagcggacga agccacactg 5220 gggtcatatt acactgctgc tgctaaaaag cggtttcagt ttaaagtggt cccaaattac 5280 ggtattacaa caaaggatgc agaaaagaac atatggcagg tcttagtaaa tattaaaaat 5340 gtaaaaatga gtgcgggcta ctgccctttg tcattagaat ttgtgtctgt gtgtattgtt 5400 tataaaaata atataaaatt gggtttgagg gagaaagtaa cgagtgtgaa cgatggagga 5460 cccatggaac tttcagaaga agttgttgat gagttcatgg agaatgttcc aatgtcggtt 5520 agactcgcaa agtttcgaac caaatcctca aaaagaggtc cgaaaaataa taataattta 5580 ggtaaggggc gttcaggcgg aaggtctaaa ccaaaaagtt ttgatgaagt tgaaaaagag 5640 tttgataatt tgattgaaga tgaagccgag acgtcggtcg cggattctga ttcgtattaa 5700 atatgtctta ctcaatcact tctccatcgc aatttgtgtt tttgtcatct gtatgggctg 5760 accctataga attgttaaac gtttgtacaa attcgttagg taaccagttt caaacacagc 5820 aagcaagaac tactgttcaa cagcagttca gcgaggtgtg gaaacctttc cctcagagca 5880 ccgtcagatt tcctggcgat gtttataagg tgtacaggta caatgcagtt ttagatcctc 5940 taattactgc gttgctgggg gctttcgata ctaggaatag aataatcgaa gtagaaaacc 6000 agcagagtcc gacaacagct gaaacgttag atgctacccg cagggtagac gacgctacgg 6060 ttgcaattcg gtctgctata aataatttag ttaatgaact agtaagaggt actggactgt 6120 acaatcagaa tacttttgaa agtatgtctg ggttggtctg gacctctgca cctgcatctt 6180 aaatgcatag gtgctgaaat ataaattttg tgtttctaaa acacacgtgg tacgtacgat 6240 aacgtacagt gtttttccct ccacttaaat cgaagggtag tgtcttggag cgcgcggagt 6300 aaacatatat ggttcatata tgtccgtagg cacgtaaaaa agcgagggat tcgaattccc 6360 ccggaacccc cggttggggc cca 6383 //