ID AF329883; SV 1; circular; genomic DNA; STD; VRL; 2687 BP. XX AC AF329883; XX DT 19-JUL-2001 (Rel. 68, Created) DT 15-APR-2005 (Rel. 83, Last updated, Version 4) XX DE Maize streak virus - A[MatC], complete genome. XX KW . XX OS Maize streak virus - A[MatC] OC Viruses; Geminiviridae; Mastrevirus. XX RN [1] RP 1-2687 RX DOI; 10.1006/viro.2001.1075. RX PUBMED; 11601896. RA Martin D.P., Willment J.A., Billharz R., Velders R., Odhiambo B., RA Njuguna J., James D., Rybicki E.P.; RT "Sequence diversity and virulence in Zea mays of Maize streak virus RT isolates"; RL Virology 288(2):247-255(2001). XX RN [2] RP 1-2687 RA Martin D.P., James D., Rybicki E.P.; RT ; RL Submitted (20-DEC-2000) to the INSDC. RL Microbiology, University of Cape Town, Private Bag, Cape Town, WC 7000, RL South Africa XX DR MD5; 3e892d5f5cd25d6a1c466b0252bba86b. XX FH Key Location/Qualifiers FH FT source 1..2687 FT /organism="Maize streak virus - A[MatC]" FT /strain="MSV-A" FT /isolate="MSV-MatC" FT /mol_type="genomic DNA" FT /country="Zimbabwe" FT /note="isolated in 1996 from severely infected maize FT subtype: MSV-A5" FT /db_xref="taxon:268325" FT misc_feature join(2680..2687,1..2) FT /note="conserved nonanucleotide at origin of (+) strand FT replication" FT stem_loop 20..2660 FT gene 150..455 FT /gene="V1" FT CDS 150..455 FT /codon_start=1 FT /gene="V1" FT /product="movement protein" FT /note="MP; facilitates intercellular movement of viral DNA" FT /db_xref="GOA:Q77JB7" FT /db_xref="InterPro:IPR002621" FT /db_xref="UniProtKB/TrEMBL:Q77JB7" FT /protein_id="AAK73447.1" FT /translation="MDPQNALYYQPRVPTAAPASAGVPWSRVGEVAILSFVALICFYLL FT YLWVLRDLILVLKARQGRSTEELIFGGQAVDRSNPIPNLPAPPSQGNPGPFVPGTG" FT gene 466..1207 FT /gene="V2" FT CDS 466..1200 FT /codon_start=1 FT /gene="V2" FT /product="coat protein" FT /note="nuclear localized ss/ds DNA binding protein" FT /db_xref="GOA:Q91MI0" FT /db_xref="InterPro:IPR000143" FT /db_xref="InterPro:IPR000263" FT /db_xref="UniProtKB/TrEMBL:Q91MI0" FT /protein_id="AAK73448.1" FT /translation="MSTSKRKRGDDANWSKRVTKKKPSSAGLKRAGSKADRPSLQIQTL FT QHAGTTMITVPSGGVCDLINTYARGSDEGNRHTSETLTYKIAIDYHFVADAAACRYSNT FT GTGVMWLVYDTTPGGQAPTPQTIFAYPDTLKAWPATWKVSRELCHRFVVKRRWLFNMET FT DGRIGSDIPPSNASWKPCKRNIYFHKFTSGLGVRTQWKNVTDGGVGAIQRGALYMVIAP FT GNGLTFTAHGQTRLYFKSVGNQ" FT regulatory 1203..1207 FT /gene="V2" FT /regulatory_class="polyA_signal_sequence" FT gene complement(1213..2527) FT /gene="C1/C2" FT regulatory complement(1213..1219) FT /gene="C1/C2" FT /regulatory_class="polyA_signal_sequence" FT primer_bind 1277..1352 FT /note="origin of (-) strand replication" FT CDS complement(join(1353..1793,1886..2527)) FT /codon_start=1 FT /gene="C1/C2" FT /product="Rep" FT /note="replication initiator/associated protein; required FT for initiation and termination of viral DNA replication" FT /db_xref="GOA:Q91MH9" FT /db_xref="InterPro:IPR001146" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:Q91MH9" FT /protein_id="AAK73450.1" FT /translation="MASSSSNRQFSHRNVNTFLTYPKCPENPEIACQMIWELVVRWIPK FT YIVCAREAHKDGSLHLHALLQTEKPVRISDSRFFDINGFHPNIQSAKSVNRVRDYILKE FT PLAVFERGTFIPRKSPFLGKSDSEVKEKKPSKDEIMRDIISHCTSKEEYLSMIQKEFPY FT DWATKLQYFEYSANKLFPEIQEEFTNPHPPSSPDLLCNETINDWLQPNIFQSSDERSRK FT QSLYIVGPTRTGKSTWARGLGVHNYWQNNVDWSSYNEDAIYNIVDDIPFKFCPCWKQLV FT GCQRDFIVNPKYGKKKKVQKKSKPTIILANSDEDWMKEMTPGQLEYFEANCTIYIMSPG FT EKWYSPPELPPTEAVHSDRS" FT gene complement(1709..2527) FT /gene="C1" FT CDS complement(1709..2527) FT /codon_start=1 FT /gene="C1" FT /product="RepA" FT /note="replication initiator/associated protein ORFA; FT possibly involved in cell cycle regulation" FT /db_xref="GOA:Q91MH8" FT /db_xref="InterPro:IPR001146" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:Q91MH8" FT /protein_id="AAK73449.1" FT /translation="MASSSSNRQFSHRNVNTFLTYPKCPENPEIACQMIWELVVRWIPK FT YIVCAREAHKDGSLHLHALLQTEKPVRISDSRFFDINGFHPNIQSAKSVNRVRDYILKE FT PLAVFERGTFIPRKSPFLGKSDSEVKEKKPSKDEIMRDIISHCTSKEEYLSMIQKEFPY FT DWATKLQYFEYSANKLFPEIQEEFTNPHPPSSPDLLCNETINDWLQPNIFQVSPQAYML FT LQPNCYTLEDAISDLQWMDSVSSHQMRDQESRASTSSAQQEPENLLGPEA" FT repeat_region 2594..2601 FT /note="iteron" FT regulatory 2639..2658 FT /regulatory_class="GC_signal" XX SQ Sequence 2687 BP; 686 A; 648 C; 684 G; 669 T; 0 other; accgcgcctt cttttcctgc gagggcccgg tagggcccga gcgatttgat gtaaagcttg 60 gtcctgcttt gtatgattta tctaaagcag cccattctaa agaaaccggt cccgggcact 120 ataaattgcc taacaagtgc gattcattca tggatccaca gaacgccctg tactatcagc 180 cgcgggtacc cacagcagct ccggcatccg caggagtgcc gtggagtcgc gtaggcgagg 240 tagctatttt gagctttgtt gcattgattt gcttttactt gctttacctt tgggtgctga 300 gagaccttat cttagttctg aaggctcgac aaggcagatc cacggaggag ctgatatttg 360 gaggacaagc tgtggatagg agcaacccta tccctaatct accagcacca ccaagtcagg 420 gcaatcccgg gccatttgtt ccaggcacgg gataagcaat cagccatgtc cacgtccaag 480 aggaagcgtg gagatgatgc gaactggagt aagcgggtga ctaagaagaa gccttcttca 540 gctgggctga agagggctgg aagcaaggcc gataggccat ccctccaaat ccagacactc 600 cagcatgctg ggaccaccat gataacggtc ccatccggag gagtatgtga cctcatcaac 660 acctatgccc gaggatctga cgagggcaat cgccacacca gcgagactct cacgtacaag 720 atcgccatcg actaccactt cgttgccgac gcggcagcct gccgctactc caacaccgga 780 accggtgtaa tgtggctggt gtatgacacc actcccggcg gacaagctcc gaccccgcaa 840 actatatttg cctaccctga cacgctaaaa gcgtggccgg ccacatggaa ggtgagccgg 900 gagctgtgtc atcgcttcgt ggtgaaacgg cgatggttgt tcaacatgga gaccgacggt 960 cggattggtt cggatatccc tccctcgaat gcaagttgga agccctgcaa gcgcaacatc 1020 tacttccaca agttcacgag cgggttggga gtgagaacgc agtggaagaa tgtaacggac 1080 ggaggagttg gtgccatcca gagaggagct ttgtacatgg tcattgcccc aggcaatggc 1140 cttacattta ctgcccatgg gcagacccgt ctgtacttta agagtgttgg caaccagtaa 1200 tgaataaaaa ctcccgtttt attatatttc atgaatgctg aaagcttaca ttaatatgtc 1260 gtgcgatggc acgcaaaaac acacgcaatc aatacagggg ggtagtaggc gggcggctaa 1320 gggtggtgct cggcgggcaa aacatcgaaa aatcaagatc tatctgaatg tactgcctcc 1380 gtaggaggca gctcaggggg agaataccac ttctcccccg gcgacataat gtaaatggtg 1440 caatttgcct cgaaatactc cagctgccct ggagtcattt ccttcatcca atcttcatcc 1500 gagttggcga ggattattgt aggcttagac ttcttctgca ccttcttctt cttaccatac 1560 ttggggttta caatgaaatc cctctgacag ccaactaact gtttccaaca aggacagaat 1620 ttaaacggga tatcatctac aatgttgtag attgcgtctt cgttgtatga agaccaatca 1680 acattatttt gccagtaatt atgaacccct aggcctctgg cccaagtaga ttttccggtt 1740 cttgttgggc cgacgatgta gaggctctgc tttcttgatc tctcatctga tgactggata 1800 cagaatccat ccattggagg tcagaaattg catcttcgag ggtataacag ttaggttgaa 1860 ggagcatgta agcttgggga ctgacctgga agatattagg ctggagccaa tcattgattg 1920 tctcattaca aagtaaatca ggtgaggagg gtggatgagg attggtgaac tcttcctgaa 1980 tctcaggaaa aagcttattt gcagagtatt caaaatactg caattttgtg gcccaatcat 2040 agggaaactc tttctggatc atagagaggt actcctcctt ggaagtacag tgtgaaataa 2100 tgtctctcat tatttcatct ttggaaggct ttttttcctt tacctctgaa tcagattttc 2160 ctaggaaggg ggacttccta ggaatgaaag tacctctctc aaacacagcc agaggttcct 2220 tgagaatgta atccctcacc ctgttaacgg acttggcact ctgaatgttt gggtgaaacc 2280 catttatatc aaagaacctt gagtccgata ttcttaccgg cttctctgtt tgaagcaatg 2340 catgtaaatg caaacttcca tctttgtgtg cctctcgggc acagacaata tacttcggta 2400 tccaacgaac aacgagctcc catatcatct gacaggcgat ttcaggattt tctggacact 2460 ttgggtaggt taagaacgtg ttcacgttcc tgtgtgagaa ctgacggttg gatgaggagg 2520 aggccatatc cgacgacgga ggatgaggct gagggatggc agatggggag ctctcaactc 2580 tataccaacc ggtgcgcctt cgaaatccgc cgccccccct cttatagtgg ttgtgaatgg 2640 gccggaccgg gccggcccag caggaaaaga aggcgcgcac taatatt 2687 //