ID AF280539; SV 1; linear; genomic RNA; STD; VRL; 6683 BP. XX AC AF280539; XX DT 02-AUG-2000 (Rel. 64, Created) DT 29-MAY-2003 (Rel. 75, Last updated, Version 4) XX DE Beet soil-borne mosaic virus RNA1 RNA-dependent RNA polymerase gene, DE complete cds. XX KW . XX OS Beet soil-borne mosaic virus OC Viruses; Riboviria; Benyviridae; Benyvirus. XX RN [1] RP 1-6683 RX DOI; 10.1007/s007050170014. RX PUBMED; 11811691. RA Lee L., Telford E.B., Batten J.S., Scholthof K.B., Rush C.M.; RT "Complete nucleotide sequence and genome organization of Beet soilborne RT mosaic virus, a proposed member of the genus Benyvirus"; RL Arch. Virol. 146(12):2443-2453(2001). XX RN [2] RP 1-6683 RA Lee L., Telford E.B., Batten J.S., Scholthof K.-B.G., Rush C.M.; RT ; RL Submitted (21-JUN-2000) to the INSDC. RL Department of Plant Pathology and Microbiology, Texas A&M Agricultural RL Research Center, 6500 Amarillo Blvd. West, Amarillo, TX 79106, USA XX DR MD5; 74e9d77d32aa403197489dac6bce7dbd. XX FH Key Location/Qualifiers FH FT source 1..6683 FT /organism="Beet soil-borne mosaic virus" FT /segment="RNA1" FT /isolate="EA" FT /mol_type="genomic RNA" FT /db_xref="taxon:76343" FT misc_feature 1 FT /note="5' Cap" FT CDS 149..6502 FT /codon_start=1 FT /product="RNA-dependent RNA polymerase" FT /note="RdRp; 239K protein" FT /db_xref="GOA:Q9IF44" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR008746" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:Q9IF44" FT /protein_id="AAF91435.1" FT /translation="MADSFGFSPMEVLLFRGESLDQLTSDMPLDVQWDVVYSARCYAIW FT KHDLTHLNPLLKNSQRLAKRWDKLISGFGGPVPLDKLLTALLALMRYCITMGVSVQDIY FT LSDVGTTSDNLLHVSRVHGLCYFKVVVCQIVFVWKAWKVLGWIFLVILLQLLLKGPRAV FT NGPDVAISEMVEAFHLKVKSFTRWSPFLKLPREKKILERELGFVPLYKQKTRAPRNHPV FT LAALREVMRQEYAASSNILNTKLKTLVIGAASREVNCYSSNPSVHYYFANKDSKDLVRT FT TLELLHSALATKYRNMESDETGEHMINLKGCGYIVKRSTDSGVYEVVSDKDVAEVLRYA FT KTVASTKRDAKQKPVGKRKMIMSEATRRTIELHELSRVVAEEKKIPNHFHFDERSFGSV FT GSFTQLVCEDVGYNFSVDAWLHLFNVTGAQTAVGYMALPNELLFEHYPISDYYDYWEGI FT EKHGALGGITISPLKNGQVVGMPKGVFQASQFCNSAAGLGIPGSKMGTVERIICHMSDG FT FGNGYNHVKSDWQTLLKNPILASPKYNFAIEVDLQGRYGCLATFRLTRVTGVKYVARTI FT KLRPEDRYVRVLDLLHIVRSIRQKGHAGLREPYQYFPVYKREVDTTVSYCFSIAEKSLT FT VQNIANFIRHHIGGVSLVNKELVSAWRLNPQLVPSFAYAVYFYVINLRGELDGMLEKLM FT KKGITWSDRLKANVSAFLRDMVDPISFLWTWLFERRLVDQIFEDGTDVFYQMDRACVDD FT KALKLSEHLNVTRDFMPADTLLPEGWVLDDWEKAPDSLKTLSAAASLPIECGTINCVGK FT SFKSIRSLLPPSVVTSPVEQFFKAGGKFRNDSEFAELLSAHYRWQMDNSFCACQVCSAL FT TGQTGSQVVECRWKEESLYTFSMSQTEVDDFRNEVKAQSIEKGNRFGELLVGVHQKIPT FT QAFEVSVRLEYIKGGPGTGKSFLIRSLADPIRDLVVAPFIKLRSDYQNQRVGDDVVSWD FT FHTPHKALDITGKQVIFVDEFTAYDWRLLAVLAYRNHAHTIYLVGDEQQTGIQEGRGEG FT VSILNRIDLSKISTHVPIMNFRNPVRDVKVLNYLFGARMVPMSSIEQGFCFGDIKDFSS FT LSNIPDTKIVHYSDETGEHMMPDYVRGISKTTVRANQGSTYDNVVLPVLPSDLKLINSQ FT ELNLVALSRHKNKLTILLDNDGMNIGATLKGMIEGVPEELERKDYIIGMYLGNHLPIKK FT EFFFPESEFAKSFRLMVAKYEAFVPYDSDLPTLVSQGDVVVLDVSRVENDINDTFECAD FT FYNLISRPNNCLVVAISECLGVTLEKLDNLMQANVATISKYHNWLRKKTPSTWEDCRLF FT ADALKVSMHVKVLSDKPYDLNYLVDGAASNITLHLLGKESDGHFVAAPISGGSASTSSG FT NNNSASSSTSSEDDEEFDVTNLFADSGVSPTDMDAFCGFLEATIMTYFDKHDLPNSDWA FT HPVDGADGYYQINVEKFGLSECCQAFLRALDVFKLDSSQKKVVYKWLRSALKDKQFHWR FT ATPGNTSASSSGSDVDNDFVNLAGGKTKSKSSADVAPADTLRQSFMDYASEFIPILIAD FT APAVLPLVEPDPIVSKCMVPEFDAFLLIKEFDLDNGADEYQCSYLNEAVANRIGDKFVS FT GVLDTDIISPLNLRGHPVSETVKYHSMCVAPAQIYFKRNQWQELQVQQARYLFRKVRNS FT PSSTQDTVARMVAQMFVSDCLVPNVAEVFSTSNLWRIMDKAMHDMVTKNYQGQMEEEFT FT RNARLYRFQLKDIEKPLKDSETDLAKAGQGILAWSKEAHVKFMVAFRVLNDLLLKSLNS FT NVVYDNTMSEVKFVANINAAMSTVPGSAINGVIDAAACDSGQGVFTQLIERYIYSALGI FT SDFFLDWYFSFRERYIMQSRYVRAHMSYVKTSGEPGTLLGNTILMGAMLNAMLRGTGPF FT CMAMKGDDGFKRQANLKINTDILKLIKKETVLDFKLDLNVPITFCGYALSNGHLFPSVS FT RKLTKIAAHRFREYKHFCEYQESLRDWIKNLPKDPNVYADFLECNASLSCRTTDDVQRW FT LDAIISVSRMGYAQFMMMFPLREVAMSLPPVEDELQVLSSTKVNVSIGENISNFVRKVA FT RVDMKKF" FT polyA_site 6683 XX SQ Sequence 6683 BP; 1659 A; 1069 C; 1602 G; 2353 T; 0 other; aaattcttcc cattcgccat cattgaatcg ttattcgtat actggaacgc agttaggagt 60 ggctccaaag cgtctcgttt aaaaatagat tgcgaagtga gttcacctaa gacgacgtcg 120 gtgttttacg aatttttata taatcaagat ggcagattcg tttggttttt ctccaatgga 180 ggttttgctg tttcgtggtg agtcattaga tcagctgaca tctgacatgc ctttggatgt 240 tcagtgggat gttgtctact cagctagatg ctatgccatt tggaagcatg atcttactca 300 tctcaatccg ttgcttaaga attcgcaacg tttggcaaaa cgctgggaca agttgatttc 360 gggctttggt ggtcctgtac ctttagacaa gttattgact gctttacttg ctcttatgag 420 gtattgtatc accatggggg tgtctgtaca ggatatctat ttatctgatg ttggtacaac 480 ttcagataat ttgttacatg tgtctagggt tcatgggttg tgttacttta aagtggttgt 540 atgccaaatt gtctttgttt ggaaggcatg gaaggttttg ggttggatct tcttagtcat 600 actgctgcaa ctattattga agggtcctcg tgctgttaat ggtcctgatg tggctatttc 660 tgaaatggta gaagcttttc atttgaaggt taagtccttc actcggtggt caccgtttct 720 caaactccct agagagaaga agatactaga gagagaattg ggttttgtcc cattatataa 780 gcagaagact cgtgctccac gtaatcatcc tgtgttggct gcgttgcgtg aggttatgag 840 gcaggagtat gcggctagta gcaacatttt aaatacaaag ttgaagactt tggtgattgg 900 tgcggccagt cgtgaggtta attgttattc ttctaatcct tctgttcatt attactttgc 960 taataaagat agtaaggatt tagtgagaac tactttggag ttgttgcaca gtgccttggc 1020 tacaaaatat cgtaatatgg agagtgacga gaccggtgag catatgatca atttaaaagg 1080 ttgtgggtac attgttaaga ggtctaccga tagtggtgtt tatgaggttg tctcagataa 1140 agatgttgct gaggtattga ggtatgctaa gactgtcgct tctactaagc gtgatgctaa 1200 gcaaaaacct gttggaaaaa ggaaaatgat aatgtctgag gcaactagaa ggactatcga 1260 gttgcatgag ctgtctagag ttgtggcaga ggaaaagaag atcccgaatc attttcattt 1320 tgatgagcgt agttttggtt ctgttggtag ttttactcaa ttagtttgtg aagatgttgg 1380 gtataatttt tctgtagatg cttggttaca tttgtttaat gttacgggtg cgcagactgc 1440 tgttggttat atggctttgc caaatgagtt gttatttgaa cattatccta tctctgatta 1500 ttatgattat tgggaaggta ttgaaaaaca tggtgctttg ggcggtatca ctatttcccc 1560 attaaagaat gggcaagttg ttggtatgcc aaagggtgtt tttcaagctt cacagttttg 1620 taattcagct gctgggctcg ggattcctgg gtccaagatg ggaactgttg aacgtatcat 1680 atgtcatatg tcagacggct ttggcaacgg gtataatcat gttaagagtg attggcaaac 1740 attgcttaag aatccaattt tagcgtcacc caaatataat tttgctatag aggtagactt 1800 gcaaggacgt tatgggtgtc ttgccacttt tcgtctgacg cgagtcaccg gcgtgaagta 1860 tgttgctaga actattaaac ttagacctga ggatagatat gttcgtgtgc tagatttgct 1920 acatattgtg cgtagtataa ggcagaaagg acacgctggt cttagagaac cctatcaata 1980 tttccctgtt tataagcgtg aggttgatac cactgtctcg tattgttttt caatagctga 2040 aaagtctctg actgtgcaga acattgcaaa ttttattcga catcacattg gtggggtgtc 2100 tttggttaat aaggagcttg tttctgcctg gaggttgaat ccgcaacttg taccgtcttt 2160 cgcctatgct gtttattttt atgttattaa tttgagaggc gaattagatg gtatgttgga 2220 gaagttgatg aagaagggta tcacttggtc agatcgactg aaagctaatg tatctgcttt 2280 tttgagagat atggttgatc ctattagctt tctttggaca tggttatttg agcgtcgttt 2340 agtcgatcaa atttttgagg atggtaccga tgttttttat cagatggatc gtgcttgtgt 2400 ggatgataag gcattaaagt tgagtgaaca tttaaatgtc actcgtgatt ttatgccggc 2460 tgacacttta ttgcccgagg gatgggtttt ggatgattgg gagaaggctc cagatagtct 2520 gaagactttg tccgctgctg cttccctacc tatcgaatgt gggactatta attgtgttgg 2580 caaatctttc aagagtatcc gctctctgtt gccaccatct gtcgttacct ctcctgttga 2640 gcagtttttc aaagctggcg gcaaatttcg aaatgatagt gagtttgctg agttgttgag 2700 cgctcattat cgttggcaaa tggacaattc gttttgtgct tgtcaggttt gttctgcttt 2760 aacaggtcag actggctccc aggttgttga atgtagatgg aaagaagagt ctttgtatac 2820 tttttctatg tcgcaaaccg aggttgacga ttttagaaat gaagttaagg ctcagtctat 2880 tgaaaaaggg aatcggtttg gagagttatt ggtaggtgta catcaaaaaa ttccaactca 2940 agcttttgag gtttctgtgc ggcttgaata tatcaagggt gggcctggca ctggtaagtc 3000 ctttctgata aggtctttag ctgatcctat aagggatctt gttgtggctc cttttatcaa 3060 attgaggtcc gattatcaaa atcaacgtgt gggtgatgac gttgtttctt gggattttca 3120 cactccgcat aaggctttgg atatcacagg taagcaggtg attttcgtgg atgaatttac 3180 tgcttacgat tggcgtttgc ttgctgtttt ggcttatcga aatcatgctc ataccatata 3240 tcttgttggg gatgagcaac aaactggtat acaagagggt cgtggtgaag gggtttccat 3300 tcttaatagg attgatttat ctaagatctc aacacatgtt cctattatga attttagaaa 3360 tcccgttcga gatgttaagg tcttgaatta tttatttggt gctcgcatgg ttccaatgtc 3420 tagtattgag cagggttttt gtttcgggga tattaaagat ttttcttctt tatctaatat 3480 acctgatact aagatcgttc actattctga cgagaccggt gagcatatga tgcctgacta 3540 tgttaggggt atttctaaga ccactgtacg tgctaatcaa ggaagcactt atgataatgt 3600 tgtgttgcct gtcctaccat ctgatttgaa attgatcaac tctcaggaat tgaatttggt 3660 tgctttgtct cgacataaga acaaattaac cattttgttg gacaacgatg gcatgaatat 3720 aggtgctact ttaaagggta tgattgaagg tgtgcctgag gaacttgaac gtaaggatta 3780 cattattggt atgtatttgg gcaatcatct acctattaag aaagagttct tctttccgga 3840 gtctgaattt gcaaaatctt ttagattgat ggttgcgaag tatgaggctt ttgtgcctta 3900 tgatagcgat ttaccaactt tggtttcgca gggtgatgtc gttgttttgg atgtttctcg 3960 tgttgagaac gacattaacg acacatttga gtgtgctgat ttttacaact tgatttctcg 4020 accaaacaac tgtttggttg tagccatttc tgaatgcctg ggtgtcactc ttgaaaaact 4080 agataatttg atgcaggcca atgtcgctac tatttcaaag tatcacaatt ggttgagaaa 4140 gaagacacct tccacatggg aggattgtag gttgttcgct gatgctttga aagtttctat 4200 gcatgttaag gtgttgtctg ataaacctta tgatttaaat tatttggttg atggggcggc 4260 atctaacatt actcttcatt tgcttgggaa agaaagcgac ggtcactttg tggcagcacc 4320 tatttccggt ggtagcgctt ctacttcttc tggtaataat aatagtgctt ctagctccac 4380 ttcatctgag gatgatgaag agtttgacgt tactaattta tttgctgata gtggtgtgtc 4440 tccaactgat atggacgctt tttgcggttt tttggaggct actattatga cttattttga 4500 taagcatgat ttgccaaatt ctgattgggc acaccctgtt gatggtgctg atggatatta 4560 tcagataaat gttgagaaat tcgggttgtc tgagtgttgt caagctttcc ttcgcgcttt 4620 ggatgtgttc aaacttgata gttcgcagaa aaaggtagtg tacaagtggc ttcgtagtgc 4680 ccttaaagat aaacaatttc attggcgggc cactcctggt aacacgtcgg ctagttcatc 4740 tggatctgat gttgataatg attttgttaa tctagccggt ggtaagacta aatctaagtc 4800 gagtgctgat gtcgctccgg ctgatacttt gagacaaagt tttatggatt atgcttcgga 4860 gttcatacct attttaattg ctgatgcccc tgctgttttg cctttggttg aacccgaccc 4920 tattgtttcc aaatgtatgg ttcccgaatt cgatgctttt ttattaatca aggaatttga 4980 tttggataat ggggctgatg agtaccaatg ttcttacctt aatgaagctg ttgccaatcg 5040 tattggcgat aaatttgttt caggtgtttt ggatactgat atcatttctc cattgaactt 5100 gcgtgggcat cctgtttccg agactgtgaa atatcatagt atgtgcgtag cacctgccca 5160 aatttacttt aagcgtaatc agtggcaaga gttgcaggtg cagcaggcta ggtatttgtt 5220 tcggaaggtt cgtaactcac cctcttctac ccaggacaca gttgctcgta tggttgctca 5280 gatgtttgtt tcagattgct tagtacctaa tgttgctgag gtattttcaa catctaattt 5340 gtggagaatc atggataagg ctatgcatga tatggtcaca aaaaattatc aggggcagat 5400 ggaagaagaa ttcactcgaa atgcgaggtt gtacagattc caattgaaag atattgaaaa 5460 acctttaaag gattctgaga ctgatcttgc taaagctggg caaggcattt tagcttggtc 5520 caaagaggcg catgtgaagt ttatggtagc ttttagagtt ttgaatgatt tattattgaa 5580 atctcttaac tccaatgttg tgtatgataa tacaatgtca gaggtgaagt ttgttgccaa 5640 cattaatgct gccatgagta ctgttccggg gagtgctatt aatggagtca ttgacgctgc 5700 tgcttgtgat tccggtcaag gggtttttac gcaactcatt gaaaggtata tatattctgc 5760 tcttggaatt tcagatttct tcctcgattg gtacttttcc tttcgggaga gatacattat 5820 gcagtctcga tatgttcgtg cacatatgtc ttacgttaag actagtggtg agcctggcac 5880 attattgggt aatactattt taatgggtgc tatgcttaat gccatgcttc gtgggactgg 5940 gcctttttgt atggctatga aaggtgatga tgggtttaaa agacaggcta atttgaaaat 6000 taacactgat attttgaaat tgattaagaa agaaacggtg ttggatttta agttagattt 6060 aaatgttcct atcacttttt gtggttatgc tttatctaat ggtcatttat tcccaagtgt 6120 ttcgcgtaag ctgacaaaga ttgctgctca tcgttttcgt gagtacaaac atttttgcga 6180 gtatcaagaa tctttgcgtg attggattaa aaatcttccc aaagatccta atgtttacgc 6240 tgatttctta gagtgtaatg ctagcttgtc ctgccgcaca actgatgatg ttcaacgttg 6300 gctggatgct atcatttctg tttctcgcat gggctatgct caatttatga tgatgtttcc 6360 tttgcgtgag gttgctatgt ctttgcctcc tgttgaagac gagttacaag tgttatcttc 6420 cactaaggtt aatgtttcca ttggggaaaa catttctaac tttgttagga aggttgctcg 6480 tgttgatatg aaaaaatttt aaatgctttg tttgcgttat tttggtttta aataaaggcc 6540 atgccacagg cctcctatct tcggaaggtt gttgtggttt cttttccttt gtggttttct 6600 tttagttttc ttttggttgt aatgtactga ctgggtgtga attgtaccag tccttgtagg 6660 gtttgctatc agtgtattga tat 6683 //