ID AF276810; SV 1; linear; genomic RNA; STD; VRL; 3634 BP. XX AC AF276810; XX DT 29-JUL-2000 (Rel. 64, Created) DT 29-MAY-2003 (Rel. 75, Last updated, Version 2) XX DE Cryphonectria hypovirus 3 RNA2 papain-like cis-acting proteinase gene, DE complete cds. XX KW . XX OS Cryphonectria hypovirus 3 OC Viruses; Riboviria; Hypoviridae; Hypovirus. XX RN [1] RP 1-3634 RA Hillman B.I., Foglia R., Yuan W.; RT "Satellite and defective RNAs of Cryphonectria hypovirus 3-Grand Haven 2, a RT virus species in the family Hypoviridae with a single open reading frame"; RL Unpublished. XX RN [2] RP 1-3634 RA Hillman B.I., Foglia R., Yuan W.; RT ; RL Submitted (09-JUN-2000) to the INSDC. RL Plant Pathology, Rutgers University, 59 Dudley Road, New Brunswick, NJ RL 08901, USA XX DR MD5; 263d4d9550930c11dfead6e43eeb8214. XX FH Key Location/Qualifiers FH FT source 1..3634 FT /organism="Cryphonectria hypovirus 3" FT /segment="RNA2" FT /host="Cryphonectria parasitica" FT /strain="Grand Haven 2" FT /isolate="CHV3-GH2" FT /mol_type="genomic RNA" FT /note="defective hypovirus" FT /db_xref="taxon:106962" FT CDS 369..2819 FT /codon_start=1 FT /product="papain-like cis-acting proteinase" FT /db_xref="GOA:Q9IF58" FT /db_xref="InterPro:IPR002704" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:Q9IF58" FT /protein_id="AAF87739.1" FT /translation="MREKHQNNQPGSGSSRSGRDTSVNKVAPTRSGSVPDDTRVIAQSR FT PSTSSGDKKKSVGDDGFIPTLLDCTSYGGARVGGEPPLAKFTENPCYPVPLGEQLKLSP FT DFTVCRCQVHIRPASYCLTDLKGCALKQVGNHPVIQAAAKKQNTFCHVSEDVRRLDRNF FT VELVCNSFPNQPAFSVFEGNPLANRLASSHSADVKDFGMGYCALSVLRPTLRWRSARVL FT GPDCLLGDFDKVFNWAGLKQFKAMTFVEVYRGFYHLVTVPGAKGVDLEAGENLKNEISK FT ILEKNPDARVGTGSDVDDGTYLPPGYFEEVSPEDGYFEERDFPLDLCMEVLFSPSYLER FT AREWVDARPKFGQDVHQAARDFNAGYIWPTPGTGEREEQGTSTGWTGIDHADSVCSVQE FT ALLEEKTPMVTGVPGAGKSTDFIISLKRKYRTVIVACPRQILVKNNPVAETKLYAGCED FT NLTTGCINFGTASYLRRMLADLPEGTVLCLDDFHEMDEDSLWLLDRYRGQCVVITATPD FT FCGSQRFSEVRLSKGRNSAWTIQDDFRDTPGKLEDGWNCLMESAKTNDRVRMIVPRIQD FT VETCKRHAAQLVTNKRVCGLYRGQNTVTKADWYFATSIVDAGLTIPGLTKIIVLGWSLG FT YKHDKFIIRPSSRNIFAQRRGRTGRTCAGQYIRLVKGYDDSNWDFSTPFQCNSWSTAQK FT WDPNFRRGKCRTPGMIEALPGGYESVFGESDWSMVLYAVFMYDARLDANRARASYQAMR FT KFPERKEFSHLTGRIENFHFDDLFMVEDKLKRFQLPGQNGDFWSWDLHSCVQVDFEQNA FT HLIY" XX SQ Sequence 3634 BP; 959 A; 764 C; 928 G; 982 T; 1 other; ggggttagag aaatcttggg agatttctat cgtcatagac atgtgtgatg tacttacgtc 60 tctaggacgc ctatgactgg tttatactct gtcgagttga acgtctggtg gttcctacgt 120 ataagaactg cagtcttatg tgtgaaaccc tacccctcgc taaccgagaa cggttgtgtg 180 atttgaggaa cgttcgttgt ttaaacttct ttggaggaac tttaaattgt attaattttg 240 catttgcaag agttagccca tctctaaaat gaggctatcg ctgtgaacag ccttaaagac 300 cctctgggca aactgattat gaattgagag ttagacttct cggaaaaagt ctggtcttgt 360 cctagattat gcgggagaaa caccaaaaca accagccggg atctggctct tcccgcagtg 420 gccgcgacac atctgtgaat aaagtcgctc cgacacggtc tgggtctgtg ccggatgaca 480 ccagggtgat tgcccaatcc aggccttcta cttcttcagg cgacaagaag aagtccgttg 540 gtgatgacgg tttcatccca acactgcttg actgcacatc ctatggaggt gcacgggtgg 600 gtggtgaacc cccgttagcc aaattcactg agaacccctg ttaccctgta ccacttgggg 660 aacagttaaa gctaagtcca gacttcacag tctgcagatg tcaggtgcat atccgacctg 720 catcttactg cctaacggat ctgaaagggt gtgctctgaa gcaggttggg aaccatccgg 780 ttatccaagc tgcggcaaag aaacagaaca cattttgtca tgtttctgaa gatgttagga 840 gattagatag gaattttgtg gaacttgttt gcaattcctt ccctaatcag cctgcttttt 900 cagtgtttga aggaaatcca ttggctaata ggttggcatc atcacattct gccgacgtca 960 aggatttcgg catgggttat tgtgcattgt ctgtcctgcg tcctacactc aggtggcggt 1020 ctgccagagt tcttggaccc gattgtctcc ttggagactt tgataaggtc tttaattggg 1080 cagggcttaa acaatttaaa gcgatgacgt ttgtcgaagt ctatcgtgga ttttatcatc 1140 tggtgactgt gcctggcgcg aagggggtgg accttgaagc cggtgagaac ttgaagaatg 1200 aaatctcaaa aatccttgag aagaaccctg atgcaagggt aggtactggg tcggatgttg 1260 atgatggcac ctacttgcct cccggctatt ttgaagaggt aagtcctgag gatgggtact 1320 ttgaggagag rgattttccg ctcgacctct gcatggaggt gctgttctca ccatcttatc 1380 tcgagagagc tcgagaatgg gtggacgcgc gtcctaagtt tgggcaagac gtacatcaag 1440 ctgcccgaga ctttaacgct ggatatatat ggcctacacc tggcacaggt gagcgtgaag 1500 aacagggtac atcgacagga tggactggaa ttgatcatgc agactctgtg tgtagtgttc 1560 aagaggctct gcttgaggag aagacaccca tggtcacagg tgtccctggt gctgggaaat 1620 ctacggattt tatcatcagc ctgaagcgga aatatagaac ggtgatcgtt gcttgtcccc 1680 gtcaaatctt ggtcaaaaac aaccctgtag cagagacaaa attatatgcg ggttgtgagg 1740 acaatttgac aacgggttgt ataaactttg gaactgctag ctacttacgt agaatgcttg 1800 cagatttacc tgaaggcaca gtgctatgtc tggatgattt ccatgagatg gacgaagaca 1860 gcttatggct gttagacaga tatagaggac aatgtgttgt tatcacagca acacctgact 1920 tttgtggtag ccaaaggttc tctgaagtcc gtctttcaaa aggtagaaat tctgcctgga 1980 caatacaaga tgacttcaga gacactcccg gaaagctgga agacggatgg aactgcctaa 2040 tggaaagtgc aaaaacaaac gatcgtgtac ggatgatcgt cccacgcatt caagatgtgg 2100 agacatgcaa gcgacatgca gcacaacttg ttacgaacaa gcgagtttgc gggttataca 2160 gagggcaaaa cactgtcaca aaggctgatt ggtatttcgc gacatcaatt gttgatgcgg 2220 gtttgactat accagggttg acgaaaatca tagttcttgg ttggtcgttg ggttacaagc 2280 atgacaagtt catcatacgt ccttcttctc gcaacatatt tgctcagaga aggggaagaa 2340 cgggacggac ttgtgcaggc cagtacatac gactagtcaa gggttacgat gattccaact 2400 gggacttttc aacaccgttc caatgcaaca gttggtcgac tgctcaaaag tgggatccaa 2460 acttcagacg tggtaagtgt cgcacaccag gtatgataga agctctacct gggggttacg 2520 aatctgtctt cggtgaaagc gattggtcaa tggtgcttta tgcagttttt atgtatgatg 2580 cacgcttaga tgcgaaccgt gcgcgagcca gttaccaggc tatgcgtaaa ttccctgaac 2640 gtaaagaatt cagtcatctt actgggagga tcgaaaactt ccactttgat gacctgttca 2700 tggttgaaga caaacttaaa cggttccaac ttcctgggca gaacggggac ttctggtcat 2760 gggatttgca ttcctgtgtc caggtggact tcgaacaaaa tgcccatctc atttactaga 2820 cgttgactag tataataaca acggtgcatt tcttttgtca tttcttttgt cagtgtatcc 2880 acaacctgtc gcgagcccgc gaaggcctaa aactagcaat tggggagaac tttgccgtaa 2940 tcaatggcct ctgaggctga aactggggta aacattttgg gacaacctcc tatggcattt 3000 agaggttttt gcccaatttc ccagaagtag gaaggcatga tggtgccctc acaccttgtg 3060 ggttacgcca aagttggaca agactgcggg tcgcttgaag tcgaatctcc catcaccagt 3120 atctggagta gaccagactg ggaccttttt aggttgctaa aggtcctacg gggcttagta 3180 aaccgtcgtt ctcacaatct aggagtggaa aagcagacct cagtctcgca ctgagatggc 3240 gcttagtacg cctagtgtat tgggtggttc ccaagcacac gacgaaaata aaccaaacag 3300 gttgtttttt cctttatatt taaagcgttc cttagttctc tggaaaatga gaccagagct 3360 ggacgatatt taaaattcaa aaatatcttt cttcccgtta aaagaagata aagatcaact 3420 tggattaacc tttggccaaa gggtaattgt tcaatggaga ttgagaccat tgctacccaa 3480 ctggaaaagg tgctaggaag ctttgttccg tgtgacgcac tgcaggtacg ttcatgttta 3540 aattaaccag atagtaataa cgggctggta acaaagtgga gcaatccttt tgcgttttag 3600 cggcggcacc gtatatacgg gcgtcgcttt cgca 3634 //