ID AF174585; SV 1; linear; genomic RNA; STD; VRL; 2979 BP. XX AC AF174585; XX DT 20-SEP-1999 (Rel. 61, Created) DT 19-JUN-2004 (Rel. 80, Last updated, Version 3) XX DE Apple mosaic virus RNA 2 putative polymerase gene, complete cds. XX KW . XX OS Apple mosaic virus OC Viruses; Riboviria; Bromoviridae; Ilarvirus. XX RN [1] RP 1-2979 RX PUBMED; 10640567. RA Shiel P.J., Berger P.H.; RT "The complete nucleotide sequence of apple mosaic virus (ApMV) RNA 1 and RT RNA 2: ApMV is more closely related to alfalfa mosaic virus than to other RT ilarviruses"; RL J. Gen. Virol. 81(Pt 1):273-278(2000). XX RN [2] RP 1-2979 RA Shiel P.J., Berger P.H.; RT ; RL Submitted (02-AUG-1999) to the INSDC. RL P.S.E.S., University of Idaho, Agricultural Sciences Building, Moscow, ID RL 83844-2339, USA XX DR MD5; 687fa801e86e41d67bd59406036cc396. DR EuropePMC; PMC5491605; 28713347. XX FH Key Location/Qualifiers FH FT source 1..2979 FT /organism="Apple mosaic virus" FT /segment="RNA 2" FT /mol_type="genomic RNA" FT /note="no ORF 2b present" FT /db_xref="taxon:12319" FT 5'UTR 1..79 FT /note="contains stem-loop structure, possible pseudoknot" FT CDS 80..2707 FT /codon_start=1 FT /product="putative polymerase" FT /note="99,866 Da predicted molecular weight" FT /db_xref="GOA:Q9QGG9" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:Q9QGG9" FT /protein_id="AAD55723.1" FT /translation="MDPLFSVFRNVDFSVKKMFTFDHEGDLVEPLLQLKHRTLTGVSKT FT DEYAKLKQEYDECVTEEARQEALAVLNEYTRNHHDRVIGFTNLFIGMALVKFLGPKMQR FT VFTQFIGTEMGPLLQTRWGGLFDLELESDYFIEVPNFDDYYVRDYEPYVEIDESVLLPE FT EIEITSTEKSSEDVTSEETVEIDLTEPAMNSDLVTIRRSFEIWADGSEFGEELPPIPSD FT FTVSAEGDDSSRDETEDSFDINALDDERPALENPGKIVKTPLPLIPDVGRFETNQLMMV FT KEVVPHKFESILECHEKVLARNDWKSLAMYFPIGDVPTCGYTDLMAFPVKHTSPEFIQM FT AIDEMLPGISDIDDSFFQELVETSDIALELDRATLDTSVFNDWTKSSGPKLNGLFRTGN FT MSKRIPTQREAALAIKKRNLNVPDLQQVLFEDDEARKIANRFINTVIDPNKLAQFPGYI FT SEGEMGYFNKYLSGKNIPEDAFVDPCALVSMDKYRHMIKTQLKPVEDCSQIFERPLASP FT ITYHDKGKVMSTSPILVMMCNRLLLCLTEKISIPTGNISLFSLDPFASEMTKEFKEIDP FT STFDKSQQRLHHLTHYHTPTALGAPADFIDMWFGSHEISHIRDGPCGVGFSVNYQPRTG FT DACTYLANTIITLSALAYMYDLLDPNITFVIASGDDSLIGSRVPLDRDDEFKFTTLFNF FT EAKFPHNQPFVCSKFLCLVPTTDGGKKVVAVPNALKLNIKLGVKDLSPLTFDSWYESWL FT DLIWYFDNYLIVSTMKDYLSHRYLRKPTMFQEGAMLAYGSIFANKEKCLRSVFGISSEE FT LKRMVRKLQPEKKRAPINQITMEKPIGDNLIVRKGFVEKELVDRKPRLGKKERKELEKR FT RLKT" FT misc_feature 2084..2092 FT /note="Region: GDD motif" FT 3'UTR 2708..2979 FT misc_feature 2962..2965 FT /note="conserved sequence" XX SQ Sequence 2979 BP; 849 A; 541 C; 751 G; 838 T; 0 other; ggttatttca cgtggttgtg aaattaatta attatctttt caactgtgat ctcacattta 60 acgaaaagtt tatgtgatca tggatccctt gttctcagtt ttccggaatg ttgacttttc 120 ggtgaagaaa atgttcacgt tcgatcatga aggagacttg gtggaaccat tgctccagtt 180 gaagcaccga acccttactg gggtttcgaa aaccgatgag tacgcgaagt tgaagcagga 240 atatgacgaa tgcgtgaccg aagaagcgcg acaagaagcg ctagcagttt tgaatgagta 300 cactcgaaat caccatgacc gagttatcgg gtttactaac ctgtttattg ggatggcatt 360 ggtgaaattc cttgggccga agatgcaaag agtgtttact caattcatag ggacagagat 420 gggaccattg ctgcagacgc gatggggagg actgttcgat ttagagcttg aatccgatta 480 tttcatcgaa gtcccgaatt ttgacgatta ctatgttcgt gattatgaac catacgtcga 540 gatagacgag tctgtgctgc taccagaaga gatcgagata acttcgactg agaagagttc 600 tgaggacgtg acgtccgagg agactgttga gatcgattta acagaaccag cgatgaatag 660 tgatctggta actattcgca gatcgtttga gatctgggct gatggatctg agttcggtga 720 ggaattgcct ccgattcctt cggactttac agtctccgcg gaaggagacg acagttctcg 780 agatgagact gaggattcgt ttgatatcaa tgcgctcgat gatgagcgtc ctgccttaga 840 gaatcctgga aagatcgtga agacaccatt gcctcttatc cccgatgtgg gacgattcga 900 gacgaatcaa ttgatgatgg tcaaggaggt tgtgcctcac aagtttgaat caattctgga 960 gtgtcatgaa aaggttttag cgagaaacga ttggaagtct cttgcgatgt attttccgat 1020 aggagatgtt cccacttgtg ggtatacaga tcttatggca ttccctgtga agcacacaag 1080 tcctgaattt atccaaatgg cgatcgatga gatgctacca ggaatttctg acattgatga 1140 cagtttcttt caagaactgg tcgaaacttc agatattgcc ttggaattgg atagggcgac 1200 tttggataca tccgtgttca acgattggac aaaatcttca ggtccgaagt tgaatggatt 1260 attccgaact gggaacatgt cgaaaagaat tccgacccag cgagaagctg ctttggcgat 1320 aaagaagagg aatttgaatg ttccagattt acagcaggtt ttattcgagg atgatgaggc 1380 taggaagatt gcgaatcgtt tcattaacac agttattgat ccgaataaac tagcgcaatt 1440 ccccggttac atttcagaag gagagatggg ttactttaat aagtatcttt ccgggaagaa 1500 tataccagag gatgcttttg tggatccatg tgctttggtg tcgatggaca agtatcgaca 1560 tatgatcaaa actcaattga aaccagttga ggattgttcg cagatatttg agagaccttt 1620 ggcttcaccg attacatatc atgataaagg taaagtaatg tctacttcac ccattttggt 1680 catgatgtgt aataggctac tgctgtgttt gactgagaag atatcaattc cgacaggaaa 1740 tatctcatta ttctcattgg atccctttgc ttccgagatg acgaaagagt ttaaagagat 1800 agacccctcg acattcgata agtcacagca gaggttgcat cacttgactc actatcacac 1860 ccccacagct cttggcgcgc ctgccgactt cattgacatg tggtttggct cacacgagat 1920 atcgcatatc agggacggac cctgcggtgt cgggtttagt gtgaattatc agcctcgaac 1980 tggagacgct tgtacatacc tggcaaatac gatcattaca ttatccgctt tggcatatat 2040 gtatgatctt ttagatccga atattacttt cgtcatcgct tcaggagacg atagtttaat 2100 aggatcgaga gtaccattgg atagggacga cgagtttaaa ttcacaactt tgttcaactt 2160 tgaggctaaa tttccacata atcagccctt tgtttgtagc aaatttttgt gtctagtccc 2220 gacgactgat ggtggtaaga aagtggtggc tgttccgaat gcgttgaagt tgaacataaa 2280 acttggtgtt aaggatttga gcccattaac tttcgattcc tggtatgaat cttggttgga 2340 tttgatttgg tatttcgata attatctgat tgtttcgact atgaaagact atctgagtca 2400 cagatatttg agaaaaccaa caatgtttca agaaggagcg atgttagctt acggttcgat 2460 ttttgccaat aaagagaagt gtcttagatc tgtatttggc attagttcgg aggaactcaa 2520 gcgaatggtg aggaaattgc aaccagagaa aaagagagct ccgataaatc aaatcaccat 2580 ggagaaacca attggagaca accttatcgt gaggaaagga tttgtcgaga aggaattggt 2640 ggatagaaaa cccagattgg gtaagaaaga gcggaaagag ctcgagaaac gtcgtttgaa 2700 gacgtaaatt gaaagttaga aagagcggga ggctcgaagt tctaatttga ggagcgtgga 2760 gctcgaagtt ccgagaggga actgaagcat atcgtgagga tatgcgttgt aggggagatg 2820 gaccccaaga ctcgattaga gtcagaccgt accaccgcta gtggatttgc ggtcagtttt 2880 ccgagcgtcg cctccttagg cgtgtcctag gaaaacaaca actcagtgtg gagttgattc 2940 caatttctgt gaaagaaatt gatgccccga ttaggaggc 2979 //