ID AF174584; SV 1; linear; genomic RNA; STD; VRL; 3476 BP. XX AC AF174584; XX DT 20-SEP-1999 (Rel. 61, Created) DT 19-JUN-2004 (Rel. 80, Last updated, Version 3) XX DE Apple mosaic virus RNA 1 putative methyltransferase/helicase gene, complete DE cds. XX KW . XX OS Apple mosaic virus OC Viruses; Riboviria; Bromoviridae; Ilarvirus. XX RN [1] RP 1-3476 RX PUBMED; 10640567. RA Shiel P.J., Berger P.H.; RT "The complete nucleotide sequence of apple mosaic virus (ApMV) RNA 1 and RT RNA 2: ApMV is more closely related to alfalfa mosaic virus than to other RT ilarviruses"; RL J. Gen. Virol. 81(Pt 1):273-278(2000). XX RN [2] RP 1-3476 RA Shiel P.J., Berger P.H.; RT ; RL Submitted (02-AUG-1999) to the INSDC. RL P.S.E.S., University of Idaho, Agricultural Sciences Building, Moscow, ID RL 83844-2339, USA XX DR MD5; 39846e34715511c6f5bd3860e060b0bb. XX FH Key Location/Qualifiers FH FT source 1..3476 FT /organism="Apple mosaic virus" FT /segment="RNA 1" FT /mol_type="genomic RNA" FT /db_xref="taxon:12319" FT 5'UTR 1..78 FT /note="contains stem-loop structure, possible pseudoknot" FT CDS 79..3219 FT /codon_start=1 FT /product="putative methyltransferase/helicase" FT /note="118,416 Da predicted molecular weight" FT /db_xref="GOA:Q9QGH0" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:Q9QGH0" FT /protein_id="AAD55722.1" FT /translation="MDRAALSNLLIATIQKQCLDENSAIGKAFSERGIDVFDRNLPKRP FT EGEKFNISFAVTAEQQAFLRRNFPGRDIKFTQSDSHSHNYAAAHRLLETDFIYGCFGTV FT DEPVIDLGGNFISHLKRRRYNVHSCCPLLDDRDGARFTERMISLKTYYRTHQDEKHEAD FT YCKCRFEECDRKADYVMAIHATSDLSLEKLCKALANKGTKKMIMSIMMDPNMLIRDYGE FT IPNFNVRWKIDHEADTIKFDFIDAPCLGYQHKFSILKQYLTVNAGVVGGTQAFRVERRA FT DLGGVFIVDITAVAGYHKKMIVGGSRSCAWASCVKGKTVVNTAEVVDDWFKKLTKRSCV FT LIDTKVLTRVLESSFRQFKPTTDPASAIQTMATMLSSSTNYTVINGVTLQAGESLPFSD FT YVSVATTIYVRTRKMYEAIEQNIKKLIEPQLTNIHDVLPAQPDSGFSAHEGLSGFLGNL FT FMPLPKKVQVDGLKSRRDVYEIEGKSWSEWVKSEAYLFLGRCKVEQDLISDPKLFIPLE FT RVLATKWQGNTTLTVDDLVETMVKRVRIGWRKRGTRDVKFLSLQKLQRNLLTIAKWCEN FT HPTGAMPKGFEKSAALVPEMIDLNEVVESKSPSEAVVNKYASEIQEAITYFKTEMETND FT KRLKSVGDHCEWSKKYMRTIWAGDESRGLYIPTRGAWLGPRSVPKGERRGKYERGLTKE FT GYVLLRWDNEKRGELDYDCKRNLMKYPVIFFDKSCEFAAGLRLIPALERALGMEAKFSR FT RLVDGVAGCGKTTKILAEGRLTGEDPDLFLTSNRSSAMELREKLVGSPLSKSQRVRTCD FT SFLMNGSKIKSKRIIFDECFLQHAGCVYAAATIAEAEELVMFGDTQQIPFVSRIPYMKL FT RNHKVSADERRAHNMTYRSPADTTMALSKWFYKKSIRTANRTIRSMIVKPIVSVNQVDN FT DFELYITHTQAEKHTLIATGKFDKNKVHTSAEAQGMTERNVAFVRLSRTSISLYTGKDP FT LMGPCHGLVALSRHTKKFVYFTVADTDAEDLIAKSIRDVNTASDDKVASYIHGDHKI" FT 3'UTR 3220..3476 FT misc_feature 3459..3462 FT /note="conserved sequence" XX SQ Sequence 3476 BP; 1002 A; 622 C; 958 G; 894 T; 0 other; ggttatttca cgtggttgtg aaattaatta actttctatc gtgtttcaca cattaacgaa 60 tagtttgtgt gatgtgagat ggatcgcgct gcgctctcca atttgttaat cgcgacgata 120 caaaaacaat gtctggatga aaattcagcg ataggtaagg cattttccga gagaggaatt 180 gatgtctttg accgaaatct cccgaaaagg cctgagggag aaaaatttaa tatcagtttc 240 gctgttacag ccgaacagca agcatttcta aggcgtaact tcccgggaag ggacataaaa 300 ttcacgcaga gcgattcgca tagtcataac tatgcagcag ctcacagact gttagaaact 360 gacttcatct acggatgttt tggaacagtc gatgaaccgg tgatagattt aggtggaaac 420 ttcatctcgc atttgaagag aagacggtac aacgttcata gttgttgtcc tttattggat 480 gaccgcgatg gtgcgcgttt caccgagaga atgatttcct tgaagaccta ttatcgaact 540 caccaagacg agaagcacga agcagattat tgcaagtgca ggttcgaaga atgtgatcga 600 aaagccgatt acgtcatggc tatccatgcg acgagtgatt tatcgctgga gaagttatgc 660 aaggctttgg ccaacaaggg tacaaaaaaa atgattatgt ctatcatgat ggacccgaat 720 atgctgataa gggattatgg agagatcccg aatttcaatg tccgatggaa aatagatcat 780 gaggccgata cgattaagtt cgatttcatt gatgctcctt gtctgggcta tcagcataag 840 ttctcgatcc taaaacagta tctcaccgtc aatgcggggg ttgtcggtgg aacacaggct 900 ttccgagtcg agaggagagc cgatttgggt ggtgtcttca ttgttgacat cactgctgtt 960 gcgggatacc ataagaagat gattgtggga ggaagtagat cttgcgcttg ggcatcatgc 1020 gtgaagggta agacggttgt gaatactgcc gaagtcgttg atgattggtt taaaaaattg 1080 acaaaaagat catgtgttct gatcgacacg aaagtgttga ctagggtgct tgagtcgagt 1140 tttaggcagt ttaaaccaac aaccgaccct gcaagtgcaa tacagacgat ggcgacgatg 1200 ctgtcttctt ctacgaacta caccgtcatt aacggtgtta ctcttcaagc tggtgagagt 1260 cttccctttt cggattacgt ctcagtagcg accacaatat acgtccggac tagaaagatg 1320 tatgaggcga ttgagcagaa tatcaagaaa ttgattgaac ctcaattgac gaatatacac 1380 gatgtgttgc cagcccaacc agatagtggg ttttcagccc acgaaggttt gtcgggtttt 1440 cttggtaacc tattcatgcc tctaccgaag aaggtacagg tagatggtct taagtcacgg 1500 agggacgtgt atgaaatcga gggtaagagt tggtctgaat gggttaaatc tgaggcttac 1560 ctgtttctcg gtaggtgcaa ggtcgagcaa gacttgatct cagatcctaa gctatttata 1620 ccactcgaaa gagttctggc gacgaagtgg caagggaaca ccactttgac tgtagacgat 1680 ttagtcgaaa caatggtgaa gcgagttcga atcggatgga ggaagagagg aacaagagac 1740 gtgaagttct tgagtcttca gaaacttcag aggaatcttc tcacgatcgc taaatggtgt 1800 gagaatcatc caacaggcgc gatgcccaag ggattcgaga agtccgcagc gctggttcca 1860 gagatgatag atttgaacga agtagtggaa tctaaatcac catctgaggc tgtggtgaat 1920 aagtatgctt cggaaataca ggaagccatt acttatttca agacggagat ggaaacgaat 1980 gacaaacgat tgaagtctgt gggtgaccat tgtgagtggt cgaagaaata catgaggacg 2040 atatgggcgg gagacgagag tcgaggtttg tatattccca cgagaggagc ttggttagga 2100 ccacgaagtg tgccgaaagg ggaacgaaga ggtaagtacg agagaggact tactaaagag 2160 ggttacgtgt tattgaggtg ggataatgag aagcggggtg aactggacta tgattgtaag 2220 aggaatttga tgaaataccc cgtcattttt tttgacaagt cttgtgagtt cgcggcgggt 2280 ctacgtctca taccagcctt ggaacgggct ttaggtatgg aagcaaaatt ttcaagaaga 2340 ttagtcgatg gtgtcgcggg atgcggtaag actacgaaga ttttggcgga gggtagactc 2400 acaggagaag accccgactt gtttttgaca agcaatcgta gttccgcgat ggaattacgt 2460 gagaagttgg tcggaagccc tctgagtaaa tcgcagaggg tcagaacctg tgactcattt 2520 ctgatgaatg gttcgaagat taagtcgaaa aggattatat tcgatgagtg tttcttacaa 2580 cacgctggtt gtgtctacgc tgcggcgacg atagccgaag ctgaggaact tgtgatgttc 2640 ggtgatacac aacagatacc ttttgtttcg agaattccat atatgaaatt gaggaatcat 2700 aaggtttcag ccgatgaacg gagggcacat aatatgactt acaggagtcc tgcagatacc 2760 acgatggcat tgagcaagtg gttttacaag aagtcgatac gcactgccaa tagaacgatt 2820 agaagcatga tagtgaagcc gattgtatct gtgaatcaag tcgataatga ctttgagtta 2880 tatattacac acactcaggc tgagaaacac actttgattg cgacgggtaa gttcgataag 2940 aacaaagtgc atacttctgc tgaggctcaa gggatgacgg aaaggaatgt ggctttcgtg 3000 agattatccc gaaccagtat tagtttgtat actgggaagg acccgttaat gggcccgtgc 3060 cacggattag tggctttgtc taggcatacg aagaaatttg tgtatttcac agttgccgat 3120 acagacgctg aggatttgat tgccaaatcg attagggatg tgaatactgc tagcgacgat 3180 aaggttgcta gttacatcca cggagatcat aaaatatgag cgggaggctc gatagtttta 3240 tgtgggagga gcgtgaagct cgaagttccg agagggaagt gaagcatgtc gtgaggatat 3300 gcagtgtagg ggagatggac cccgagactc gatgagagtc agaccgtacc accgattgtg 3360 ggttggcggt cagtttgccg agcgtcgccg cgttaggcgt gtcctaggaa gacaacaact 3420 cgacgtagag ttgatgccaa tgtctgtgaa agaaattgat gccccgatta ggaggc 3476 //