ID AF146281; SV 1; linear; genomic RNA; STD; VRL; 3623 BP. XX AC AF146281; XX DT 21-DEC-1999 (Rel. 62, Created) DT 21-DEC-1999 (Rel. 62, Last updated, Version 1) XX DE Soil-borne rye mosaic virus strain C RNA2 20K protein, 84K protein, and DE 18K protein genes, complete cds. XX KW . XX OS Soil-borne cereal mosaic virus OC Viruses; Riboviria; Virgaviridae; Furovirus. XX RN [1] RP 1-3623 RX DOI; 10.1007/s007050050627. RX PUBMED; 10603167. RA Koenig R., Pleij C.W.A., Huth W.; RT "Molecular characterization of a new furovirus mainly infecting rye"; RL Arch. Virol. 144(11):2125-2140(1999). XX RN [2] RP 1-3623 RA Koenig R.; RT ; RL Submitted (28-APR-1999) to the INSDC. RL Institut fuer Pflanzenvirologie, Biologische Bundesanstalt fuer Land-und RL Forstwirtschaft, Messeweg 11, Braunschweig D38104, Germany XX DR MD5; b59f13981a86ed881adc1b1038830d31. DR RFAM; RF01081; SBWMV1_UPD-PKe. DR RFAM; RF01082; SBWMV1_UPD-PKh. DR RFAM; RF01103; UPD-PKc. DR RFAM; RF01107; SBRMV1_UPD-PKf. DR RFAM; RF01109; SBRMV1_UPD-PKd. XX FH Key Location/Qualifiers FH FT source 1..3623 FT /organism="Soil-borne cereal mosaic virus" FT /chromosome="RNA2" FT /strain="C" FT /mol_type="genomic RNA" FT /db_xref="taxon:100887" FT CDS 305..2569 FT /codon_start=1 FT /transl_except=(pos:833..835,aa:OTHER) FT /product="84K protein" FT /note="coat protein; ORF2; readthrough protein" FT /db_xref="GOA:Q9JAD1" FT /db_xref="InterPro:IPR001337" FT /db_xref="UniProtKB/TrEMBL:Q9JAD1" FT /protein_id="AAF18336.1" FT /translation="MAVKNGYTGYNKELNLMASIHPFIRLSTLISQIEGWQATRASILT FT HLGVMLNGVSKLGERNFFSRQKRFGTHTQDGDEIFCDLGGEAVMQIITRLTVSLQSAKG FT EGSQTRNAKRGTTPTTNQVEGEEQGQTDQTLAISNALAEFMTFIHTKDFTMNECYTQDS FT FEAKFNLKWEGTSXRDGVSGKLRARIVEDFQNRLVLADDLGVFPRRNLSGEVIRDEPEI FT IYAELEDKLLSFESSVYHPKAVTMETEVSVLPKLQTDLETGNAEEDIETTVVTEVLIDE FT ESSYFWLYFVFLLLSIFISCFIVLSRWFICFLGNRGGRGGPFFRKVATALWNARLWLLS FT KAARRYGNLGIVRKRYTRAGMRRYLRDYNFQFDEWESVVDCAPSEALIVADQRLFVRAV FT NKIVDLKGDFDAIEIVKKTFLNYGVRNYKVERWLDRHTIRSALGVLSDVTRDEVLTLVD FT GMLSLENATLDEVLGCDVEGQRNGRYFKDIVALQFAFHLIGTPEFSDFVMAYKGTLYPC FT YVEATKRHTSMLEQFHANEDQKRKNEKALEWLLMLGQGAFVFSAAVTAGVTIFKIHKWI FT KSRMLLRALQMLPSVGGGGNEGGGRFSEEALNRFAVSQTPEERIEALHTDFDTATDNME FT SFSPEDIQTEIKHVIQAHVDGTYHAADLPFLGDMSDAVVPAMADSVVDLSNVSNDVGSA FT DTSVSSVTSKVRRRAVASNTRIYPSVGNVRYSDIKSPRVSGKSGISSMKMRITSRPMLA FT S" FT CDS 305..835 FT /codon_start=1 FT /product="20K protein" FT /note="coat protein; ORF1" FT /db_xref="GOA:Q9Q9Q4" FT /db_xref="InterPro:IPR001337" FT /db_xref="InterPro:IPR036417" FT /db_xref="UniProtKB/TrEMBL:Q9Q9Q4" FT /protein_id="AAF18335.1" FT /translation="MAVKNGYTGYNKELNLMASIHPFIRLSTLISQIEGWQATRASILT FT HLGVMLNGVSKLGERNFFSRQKRFGTHTQDGDEIFCDLGGEAVMQIITRLTVSLQSAKG FT EGSQTRNAKRGTTPTTNQVEGEEQGQTDQTLAISNALAEFMTFIHTKDFTMNECYTQDS FT FEAKFNLKWEGTS" FT CDS 2639..3136 FT /codon_start=1 FT /product="18K protein" FT /note="cysteine-rich protein; ORF3" FT /db_xref="InterPro:IPR007609" FT /db_xref="InterPro:IPR016567" FT /db_xref="UniProtKB/TrEMBL:Q9Q9Q3" FT /protein_id="AAF18337.1" FT /translation="MSAYAFHSCDKCVDGPKNVVCVSKYRHSVYKVLGLSVVKCRLPAD FT CGVNCGMPAAFVLEDGHPRLTLDGYCGEKHKGYVISGAWRHAQLRTLNDELDKLEKRGE FT FLKTQIRVLSETANANTAPVYAPKKINRMKAEVQDVNVKIQDRSTALAGVMDAVALNLS FT PK" XX SQ Sequence 3623 BP; 977 A; 614 C; 946 G; 1086 T; 0 other; agtgttaact cttcttgtga tattaccttt cttaccagga taagaaataa aatattttct 60 gggttatcac tatcttgaaa cttaacagag actatcatct cgctgctcta ggcctgcaat 120 gcaataaatc ctaggtagtc agctgttagc gtgtgacgtt gacggataga ggtattttgg 180 ttcgctggat aagctaacga gacttaaagg taaggtcgat agatccttac aaaaagctgc 240 ggataaggtc actgctgaaa gtactgattc gttgcaatcg aaagtggttg tgcagttacc 300 tcagatggct gtaaagaacg gatatacggg ttacaacaag gaattgaatt tgatggcttc 360 tattcatcct ttcattaggc tgagtacttt gataagtcag attgaaggat ggcaagcaac 420 acgagctagc atacttaccc atttaggtgt aatgctcaat ggcgttagta agttaggtga 480 gcgaaatttc ttctctagac aaaaaagatt tgggacgcac actcaggacg gtgacgagat 540 attctgtgac cttggaggtg aggcagttat gcagatcatt accagactca cggtatcact 600 acaatccgcg aagggtgaag gttcccagac aagaaatgct aagagaggga cgacaccgac 660 taccaaccaa gttgagggtg aggaacaagg tcagactgat cagacgttag ccatctcgaa 720 tgcgctggct gaatttatga ctttcatcca cactaaagat tttacgatga atgagtgtta 780 cacgcaagac tcttttgaag ccaaatttaa tttgaagtgg gaaggtacga gttgacggga 840 cggcgtctcg ggaaagttga gggcacgcat tgtcgaagat ttccagaata ggctggtttt 900 ggccgacgat ttgggtgttt ttccgagacg caatcttagc ggtgaggtga taagagacga 960 gcctgaaata atatatgcag aactagagga caagctcttg agctttgaga gttctgtata 1020 tcatcctaaa gctgtgacta tggagactga agtgtctgta ttaccgaaat tgcaaacgga 1080 tcttgaaaca ggtaacgctg aagaggacat tgagacaact gtagttactg aggtactcat 1140 tgatgaggaa agcagttact tctggttata cttcgtgttt ctcttgttat ctattttcat 1200 atcttgtttc attgtgttgt cgcgatggtt tatatgtttt cttggtaata gaggagggcg 1260 tggtggccct ttctttcgga aggtcgccac tgcattgtgg aacgcgcgac tatggctatt 1320 aagtaaggcg gccagacgtt acggcaatct tggaattgtg cgaaagagat atacacgtgc 1380 tggcatgcgc aggtacttgc gtgattataa tttccaattt gatgaatggg aaagcgtggt 1440 tgactgtgct ccgagtgaag ctctgatcgt tgcagatcag agattgtttg tgagagctgt 1500 gaacaagatt gtggatttaa agggtgattt tgatgctatt gaaattgtca agaagacttt 1560 cctgaattac ggagttcgta attacaaagt ggaaagatgg ttggacaggc atacaatacg 1620 ctcggcactt ggtgtactga gcgatgttac gagggacgaa gtacttacat tagttgatgg 1680 tatgctatca ttggagaacg ctacacttga tgaggtactg ggttgtgatg ttgagggtca 1740 acgaaatggc aggtacttta aggacattgt tgccttgcag tttgcttttc atcttattgg 1800 tacgcccgaa ttttccgact ttgtgatggc ttacaaaggt actttgtatc cctgttacgt 1860 ggaagcaact aagagacata cttcgatgtt ggaacagttc cacgctaacg aagatcagaa 1920 aagaaagaac gagaaggctt tagagtggtt gcttatgctg gggcaaggag ctttcgtttt 1980 ttccgctgct gtaacagctg gtgttacgat cttcaagatt cataaatgga taaaaagtcg 2040 tatgctctta agggctttgc agatgctacc gtctgttggt ggcggtggta atgaaggtgg 2100 tggaagattt tctgaggagg ctcttaacag atttgcagta agtcaaactc ctgaggaacg 2160 cattgaggcg ctgcatactg atttcgacac ggctactgat aacatggaga gtttttcacc 2220 ggaagacata cagactgaga ttaaacatgt tattcaagcc cacgttgatg gaacttatca 2280 cgcagcggac cttccttttc tgggcgacat gtctgacgct gttgttcctg ctatggcaga 2340 ttctgttgtc gatttgagta atgttagcaa tgatgtggga agtgcggata cgtctgtctc 2400 aagtgtgacc agtaaggtta gacgtcgtgc cgttgctagt aacacaagga tttacccgag 2460 tgttggtaat gttaggtata gtgatattaa gtcaccgagg gttagtggta aaagtggaat 2520 tagtagtatg aaaatgagaa tcactagtag gcctatgttg gcgtcctagt gtgttgtttt 2580 ttaaaatact tgttcacacc gctactgctg gtctttctcg gtttttcttc ctaacattat 2640 gtcggcttac gcttttcact cttgcgataa gtgtgttgat ggacccaaga acgttgtatg 2700 tgttagtaaa taccgtcata gtgtttataa ggttttgggt ctttctgttg ttaagtgtcg 2760 tcttcctgca gattgtggtg ttaattgtgg tatgcctgca gcttttgttc tcgaagatgg 2820 gcatcctagg ctaactcttg atggttactg tggtgagaaa cacaaaggtt atgtgatttc 2880 tggtgcttgg cgacatgcgc aacttcgtac tttaaacgat gaacttgaca agttggagaa 2940 gaggggggag tttttgaaaa ctcagataag agtgctcagt gaaactgcta atgctaacac 3000 tgctcctgtg tatgctccca agaagattaa tcgtatgaag gcggaggttc aggatgttaa 3060 tgtgaaaatt caggaccgta gtactgctct tgcaggagtc atggatgctg tcgcattgaa 3120 tttatcgccg aaatagttct ccacggaagt gtgaagccat atgatgagta cgttaacact 3180 gtatttacaa ctggtatgtg tatactggaa taggtaacca ggataaagaa acctagcgaa 3240 aatgtcctac caaaacatta cgtattgtgg ttttgttgtg tggtttattt tgcttatatt 3300 gttatgttgt atgtgtgtgt tgaaaatagt ctaacttgtc gggcagagac aagtcgtttc 3360 cgtcacgata gacggagccg ctggggttgc ggattataaa tcgaacaagc ctatttgtac 3420 gggtcgagta caaacgtggc catcacgata gatggttctg tttttcgaac agatgtaaat 3480 cgaaggcgtc gtgcagtacg gtaaactgca catctatcct ctagtttcta ttgatgtaat 3540 tgaaaaaaga tcaatatttt acgatgatga ggagcgactg gtggtcgcgg tagctatgac 3600 acagctacta agaggggttc aaa 3623 //