ID AF130415; SV 2; circular; genomic DNA; STD; VRL; 2593 BP. XX AC AF130415; XX DT 01-JUN-1999 (Rel. 59, Created) DT 15-APR-2005 (Rel. 83, Last updated, Version 5) XX DE Tomato severe leaf curl virus-[Guatemala 96-1] segment A, complete DE sequence. XX KW . XX OS Tomato severe leaf curl virus-[Guatemala 96-1] OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2593 RA Nakhla M.K., Maxwell M.D., Hidayat S.H., Lange D.R., Loniello A.O., RA Rojas M.R., Maxwell D.P., Kitajima E.W., Rojas A., Anderson P., RA Gilbertson R.L.; RT "Two geminiviruses associated with tomatoes in Central America"; RL Phytopathology 84:1155-1155(1994). XX RN [2] RP 1-2593 RA Nakhla M.K., Mejia L., Ramirez P., Karkashian J.P., Doyle M.M., RA Maxwell D.P.; RT "Molecular characterization and DNA-based detection methods for RT vegetable-infecting geminiviruses in Central America"; RL Unpublished. XX RN [3] RP 1-2593 RA Nakhla M.K., Mejia L., Maxwell M.D., Maxwell D.P.; RT ; RL Submitted (22-FEB-1999) to the INSDC. RL Plant Pathology, University of Wisconsin-Madison, 1450 Linden Dr., Madison, RL WI 53706-1598, USA XX RN [4] RC Sequence update by submitter RP 1-2593 RA Nakhla M.K., Mejia L., Maxwell M.D., Maxwell D.P.; RT ; RL Submitted (02-JUL-2002) to the INSDC. RL Plant Pathology, University of Wisconsin-Madison, 1450 Linden Dr., Madison, RL WI 53706-1598, USA XX DR MD5; 055e812d3bd52255bd3b952fdef612d4. XX CC On Jul 2, 2002 this sequence version replaced gi:4928184. XX FH Key Location/Qualifiers FH FT source 1..2593 FT /organism="Tomato severe leaf curl virus-[Guatemala 96-1]" FT /chromosome="segment A" FT /isolate="GT96-1" FT /mol_type="genomic DNA" FT /country="Guatemala:Sansirisay" FT /clone="pTMSA-1" FT /note="isolated from tomato plant collected in June, 1996 FT by Luis Mejia" FT /db_xref="taxon:223361" FT rep_origin join(2458..2593,1..14) FT CDS 186..941 FT /codon_start=1 FT /gene="cp" FT /product="capsid protein" FT /function="capsid protein" FT /db_xref="GOA:Q9WHE6" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:Q9WHE6" FT /protein_id="AAD33453.2" FT /translation="MPKRDAPWRLMAGTPKVSRSSNQSPRTGTGPKFDKAHAWVNRPMY FT RKPRIYRAWRTPDVPRGCEGPCKVQSYEQRHDISHVGKVMCISDVTRGNGITHRVGKRF FT CVKSVYILGKIWMDENIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATV FT KTDLRDRYQVMHKFYGKVTGGQYASNEQAIVKRFWRVNNHVVYNHQEAGKYENHTENAL FT LLYMACTHASNPVYATLKIRIYFYDSVLN" FT CDS complement(938..1336) FT /codon_start=1 FT /gene="ren" FT /product="replication enhancer protein" FT /db_xref="GOA:Q8JVF5" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:Q8JVF5" FT /protein_id="AAM74490.1" FT /translation="MDSRTGESITADQAENSVFIWEVPNPLYFTIINVEDPIYSNTRIY FT HIQIRFNHNLRKALSLHKAYLNYQIWTTSVQASGTTYLSRFKYLVLLYLDRLGVICINN FT VIRAVRFATNRSYVSHVLENHSIKFKFY" FT CDS complement(1083..1469) FT /codon_start=1 FT /gene="trap" FT /product="transcription activation protein" FT /db_xref="GOA:Q8JVF4" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:Q8JVF4" FT /protein_id="AAM74489.1" FT /translation="MQNSSSSTPPSIKPKHKIAKSRIRRKRIDLNCGCSFYQHIDCANH FT GFTHRGEHHCGSGREFRFYLGGTKSPLFHDNQCRGPNLQQHQDIPHPNTVQPQPQEGAE FT STQSLPQLPNLDDISSSFWDDLLK" FT CDS complement(1426..2460) FT /codon_start=1 FT /gene="rep" FT /product="replication-associated protein Rep" FT /db_xref="GOA:Q9WHE5" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:Q9WHE5" FT /protein_id="AAD33452.2" FT /translation="MPRNPNLFRLAAKNIFLTYPQCDIPKDEAIEMLQNLPWSVVKPTY FT IRVAREEHADGFPHLHCLIQLSGKSNIKDARFFDLTHPRRSANFHPNAQAAKDTNAVQN FT YITKEGDYCESGQYKVSGGTKSNKDDVYHNAVNAASAGEALDIIRAGDPKTFIVSYHNV FT KANIERLFQKAPEPWVPPFPLSSFTNVPDEMQEWADDYFGRDAAARPERPISIIIEGES FT RTGKTMWARALGPHNYLSGHLDFNSRVYSNEAEYNVIDDITPQYLKMKHWKELIGAQKD FT WQSNCKYGKPVQIKGGIPSIVLCNPGEGASYKSFLEKEENKALKDWTLHNAKFIFLNST FT LYQA" XX SQ Sequence 2593 BP; 627 A; 566 C; 632 G; 768 T; 0 other; accggatggc cgcgattttt tttggacctg gcccactatc agaaattgcg ttgggccttc 60 ctggataaag ttaaccaatc agtactcgtt tgggtagtct aattattact aacttggtca 120 ccaagttgtt ttatggtcta taaatttgtc gttatgtgtg tggtccaacc acgtaaatat 180 tgataatgcc taagcgtgat gccccatggc gcttaatggc gggtacccct aaggtgagtc 240 ggtcctccaa ccagtctccc cggactggta ctgggcctaa atttgataag gcccatgcct 300 gggttaacag gcccatgtat aggaagccca ggatatatcg ggcttggaga acgcccgacg 360 ttccaagggg ctgtgaaggc ccatgtaagg tccagtccta cgagcaacga cacgatatct 420 cccacgtggg gaaggtcatg tgcatatccg atgtcacacg tggtaatggt atcacccacc 480 gtgttggtaa gcggttttgt gttaagtctg tgtatatcct cggtaagata tggatggacg 540 agaacatcaa gctgaagaac cacacgaaca gtgtcatgtt ctggttagtc agggaccgta 600 gaccctatgg tacgcctatg gatttcggcc aggtgttcaa catgtttgac aatgagccca 660 gcactgccac ggtcaagacc gatctacgcg atcgttacca ggtcatgcac aagttctatg 720 gcaaggtgac aggtggacag tatgccagca acgagcaggc tatagtcaag cgattctgga 780 gggtcaacaa ccatgtggtc tacaatcacc aagaggctgg caagtatgag aatcacacgg 840 agaacgccct gttattgtat atggcatgta ctcatgcctc taaccctgtg tatgctactc 900 ttaagatccg gatctatttt tatgattcgg tattgaatta ataaaatttg aattttattg 960 aatgattttc cagtacatga gatacatacg acctgtttgt cgcgaatcgt acagctctga 1020 taacattgtt aatgcaaata acacctaacc tatctaaata caataagact aaatatttaa 1080 atctacttaa gtaagtcgtc ccagaagctt gaactgatgt cgtccagatt tggtagttga 1140 ggtaggcttt gtgtagactc agcgccttcc tgaggttgtg gttgaaccgt atttggatgt 1200 ggtatatcct ggtgttgctg taaattgggt cctctacatt gattatcgtg aaataaaggg 1260 gatttggtac ctcccagata aaaacggaat tctctgcctg atccgcagtg atgctctccc 1320 ctgtgcgtga atccatggtt ggcgcagtcg atgtgctggt agaacgagca gccacagttt 1380 aggtctattc tctttcgacg aatcctggac tttgcaattt tgtgtttagg cttgatagag 1440 ggtggagttg aggaagatga attttgcatt gtggagtgtc caatctttta gtgctttgtt 1500 ttcctctttt tcgaggaaac ttttatagct ggccccctca ccaggattgc agagcacgat 1560 tgacggtatt ccccctttaa tttgaactgg cttcccgtat ttgcaatttg attgccagtc 1620 cttttgggcc ccaatcagct ctttccaatg cttcatcttt aaatattgcg gagtgatgtc 1680 atcaatgacg ttgtattccg cttcatttga gtaaacccta gaattgaaat ctaggtgtcc 1740 actcaaataa ttgtgtgggc ctaaggcacg cgcccacatt gtctttcccg tcctcgattc 1800 accctcgatg attatactta taggtctctc cggccgcgca gcggcatccc taccaaaata 1860 atcatctgcc cattcttgca tctcgtccgg aacgttcgtg aacgacgaga gtggaaacgg 1920 aggaacccag ggttccggag ccttttgaaa gagccgctcg atgttagctt tgacgttatg 1980 gtagcttaca atgaacgtct ttgggtctcc ggcccttata atgtcgagag cctctccagc 2040 actagctgca ttgacggcgt tgtggtagac gtcgtctttg tttgattttg tacccccaga 2100 caccttgtat tgtccggatt cacaataatc accttctttg gtgatgtaat tctggacggc 2160 gttggtgtct ttggctgcct gtgcgtttgg atgaaaattg gcagaccttc tggggtgagt 2220 gaggtcgaaa aatctagcat ccttgatgtt ggacttcccg gagagttgga tgagacagtg 2280 gaggtgcgga aatccatctg cgtgttcctc tctggcgact cgtatgtacg ttggtttgac 2340 gactgaccat ggcagatttt gaagcatttc aatagcttca tctttgggga tatcacactg 2400 tggatatgtt aagaaaatat ttttggcagc tagacgaaat aaattagggt tccgtggcat 2460 ttttgtaaat atgagccagg acaccagggg gagctctctc taaaacttta ttttgctggt 2520 gtcctggtgt cccatttata ctaaaaccct cttggggaca ccaagggcaa attcggccat 2580 ccgcaataat att 2593 //