ID AF112352; SV 1; circular; genomic DNA; STD; VRL; 2777 BP. XX AC AF112352; XX DT 30-JUN-1999 (Rel. 60, Created) DT 15-APR-2005 (Rel. 83, Last updated, Version 5) XX DE African cassava mosaic virus-[Cameroon] component A, complete sequence. XX KW . XX OS African cassava mosaic virus-[Cameroon] OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2777 RX PUBMED; 10640569. RA Fondong V.N., Pita J.S., Rey M.E., de Kochko A., Beachy R.N., Fauquet C.M.; RT "Evidence of synergism between African cassava mosaic virus and a new RT double-recombinant geminivirus infecting cassava in Cameroon"; RL J. Gen. Virol. 81(Pt 1):287-297(2000). XX RN [2] RP 1-2777 RA Fondong V., Kochko de A., Beachy R.N., Fauquet C.; RT ; RL Submitted (10-DEC-1998) to the INSDC. RL Cell Biology, ILTAB/IRD/TSRI, 10550 N. Torrey Pines Rd., San Diego, CA RL 92037, USA XX DR MD5; 583bfa31fa54bd1737a6bb55aa91815c. DR EuropePMC; PMC1079959; 15784145. DR EuropePMC; PMC2816314; 20104645. DR EuropePMC; PMC3485178; 23082767. DR EuropePMC; PMC4810563; 26865712. DR EuropePMC; PMC5021159; 26662210. DR EuropePMC; PMC5130204; 27693919. DR EuropePMC; PMC6020238; 29940871. XX FH Key Location/Qualifiers FH FT source 1..2777 FT /organism="African cassava mosaic virus-[Cameroon]" FT /segment="component A" FT /strain="ACMV/CM.S1" FT /mol_type="genomic DNA" FT /country="Cameroon:southwestern rainforest region" FT /db_xref="taxon:222064" FT gene 142..483 FT /gene="AV2" FT CDS 142..483 FT /codon_start=1 FT /gene="AV2" FT /product="precoat protein" FT /note="previously AR2" FT /db_xref="GOA:Q9WR21" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:Q9WR21" FT /protein_id="AAD40937.1" FT /translation="MWDPLVNEFPDSVHGLRCMLAIKYLQALEDTYEPNTLGHDLVRDL FT VSVIRARNYVEATRRYHHFHSRLQGSSKAELRQPIHEPCYCPHCPRHKSKTGLDEQAHV FT QKAHDVQDV" FT gene 302..1075 FT /gene="AV1" FT CDS 302..1075 FT /codon_start=1 FT /gene="AV1" FT /product="coat protein" FT /note="previously AR1" FT /db_xref="GOA:Q9WR20" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:Q9WR20" FT /protein_id="AAD40936.1" FT /translation="MSKRPGDIIISTPGSKVRRRLNFDSPYMNRATAPTVHVTNRKRAW FT MNRPMYRKPMMYRMYRSPDPRGCEGPCKVQSFEQRDDVKHLGICKVISDVTRGPGLTHR FT VGKRFCIKSIYILGKIWMDENIKKQNHTNNVMFYLLRDRRPYGNTPQDFGQIFNMFDNE FT PSTATIKNDLRDRFQVLRKFHATVIGGPSGMKEQALVKRFYRLNHHVTYNHQEAGKYEN FT HTENALLLYMACTHASNPVYATLKIRIYFYDSIGN" FT gene complement(1072..1476) FT /gene="AC3" FT CDS complement(1072..1476) FT /codon_start=1 FT /gene="AC3" FT /product="replicational enhancer protein" FT /note="REn; RAP; previously AL3" FT /db_xref="GOA:Q9WR19" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:Q9WR19" FT /protein_id="AAD40940.1" FT /translation="MDLRTGELIXAPQAMNGGYTWEINNPLYFTITKHQQRPFLLNQDI FT ITVQVXFNXNLRKELGIHKCFLNFRFWTPLKPQTGRFLRGLRYQVLKYLDIIGVISIND FT VIRAADHVLFNVIEKTIERQLTHEIQFNVY" FT gene complement(1217..1624) FT /gene="AC2" FT CDS complement(1217..1624) FT /codon_start=1 FT /gene="AC2" FT /product="transcriptional activator" FT /note="TRAP; previously AL2" FT /db_xref="GOA:Q9WR18" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:Q9WR18" FT /protein_id="AAD40939.1" FT /translation="MQSSSPSQNHSTQVPIKVSHRQFKKRAIRRRRVDLVCGCSYYLHI FT NCSNHGFTHRGTHXCSSSNEWRVYLGNKQSPVFHNNQAPTTTIPAEPGHHNSPGSIQSQ FT PEEGAGDSQMFSQLQVLDALKASDWSFLKGS" FT gene complement(1533..2609) FT /gene="AC1" FT CDS complement(1533..2609) FT /codon_start=1 FT /gene="AC1" FT /product="replicase" FT /note="DNA polymerase; previously AL1" FT /db_xref="GOA:Q9WR17" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:Q9WR17" FT /protein_id="AAD40938.1" FT /translation="MRTPRFRVQAKNVFLTYPKCSIPKEHLLSFIQTLSLPSNPKFIKI FT CRELHQNGEPHLHALIQFEGKITITNNRLFDCVHPSCSTRFHPNIQGAKSSSDVKSYLD FT KDGDTVEWGRFQIDGRSARGGQQSANDAYAKALNSGSKSEALNVIRELVPKDFVLQFHN FT LNSNLERIFQEPPAPYVSPFTCSSFCQVPVELDEWVADNVRDSAARPWRPNSIVIEGDS FT RTGKTIWARSLGPHNYLCGHLDLSPKVFNNDAWYNVIDDVDPHYLKHFKEFMGSQRDWQ FT SNTKYGKPVQIKGGIPTIFLCNPGPTSSYKEFLDEEKQEALKAWALKNAIFITLTEPLY FT SGSNQSQSQTIQEASHPA" FT gene complement(2153..2575) FT /gene="AC4" FT /note="overlaps AC1" FT CDS complement(2153..2575) FT /codon_start=1 FT /gene="AC4" FT /product="transcriptional regulator AC4" FT /note="previously AL4" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:Q9WR16" FT /protein_id="AAD40941.1" FT /translation="MSFSHTQSVLYPKNTCCHSFKHSLSHQTLSSLKSVGSCIRMGNLT FT CMPSSNSRAKSRLRTIVSSIVYTRAVAPVSTPTFKVPNPAQMSSPIWIRTETPSNGDDF FT RSMDDLLEEVNNQRMMLTPKRLTAAVSQRLLMSLGN" XX SQ Sequence 2777 BP; 746 A; 567 C; 682 G; 779 T; 3 other; taatattacc ggttggcccc gcccccttta aacgtggtcc ccgcgcacta cgtatgtcgg 60 ccaatcatgc ggtagcgtta aaggttagtt attagtggtg ggccactata tacttacacg 120 cgaagttgtt gctagtgcgc aatgtgggat ccactggtga atgagtttcc agactcggtg 180 catgggctta ggtgtatgct tgcaattaaa tatttgcagg ccttagagga tacatacgag 240 cccaatactt tgggccacga tctggttaga gatctagtct cagttatcag ggctcgtaat 300 tatgtcgaag cgaccaggag atatcatcat ttccactcca ggctccaagg ttcgtcgaag 360 gctgaacttc gacagcccat acatgaaccg tgctactgcc cccactgtcc acgtcacaaa 420 tcgaaaacgg gcctggatga acaggcccat gtacagaaag cccatgatgt acaggatgta 480 tagaagccca gaccctaggg gctgtgaagg tccatgtaag gtccagtcgt ttgagcagag 540 ggatgatgtg aagcaccttg gtatctgtaa ggtgattagt gatgtgacac gtgggcctgg 600 gctgacacac agggtcggaa agaggttttg tatcaagtcc atttacattc ttggtaagat 660 ctggatggat gaaaatatta agaagcagaa tcacacgaat aatgtgatgt tttacctgct 720 tagggataga aggccttatg gcaatacgcc ccaagacttt gggcagatat ttaacatgtt 780 tgataatgag cccagtactg caacaattaa gaacgatttg agggataggt ttcaggtgtt 840 gaggaaattt catgccacag ttattggtgg tccatctggc atgaaggaac aggcgttggt 900 gaaaaggttt tacaggttga atcatcacgt gacatataat catcaggagg cagggaagta 960 tgagaatcac acagagaatg ctttgcttct gtatatggca tgtactcatg cctccaatcc 1020 tgtatatgct acgttgaaaa tacgtatata cttctatgac agtattggca attaataaac 1080 attgaattgt atttcatgag tcaactgacg ctcgatagtt ttttcaatta cattgaacaa 1140 aacatgatca gcagctctaa ttacgtcgtt aattgagata acacctataa tatccaagta 1200 tttaagtact tggtatctaa gaccccttaa gaaacgacca gtctgaggct ttaagggcgt 1260 ccagaacctg aagttgagaa aacatttgtg aatccccagc tccttcctca ggttgkgatt 1320 gaatygaacc tggactgtta tgatgtcctg gttcagcagg aatggtcgtt gttggtgctt 1380 ggttattgtg aaatacaggg gattgtttat ttcccaggta tacccgccat tcattgcttg 1440 aggagcastg atgagttccc ctgtgcgtaa atccatgatt ggagcagttg atatggaggt 1500 aatatgaaca gccacagaca agatccactc tcctacgccg gatggctcgc ttcttgaatt 1560 gtctgtgact gactttgatt ggaacctgag tagagtggtt ctgtgagggt gatgaagatt 1620 gcattcttta atgcccaggc ctttagcgct tcttgctttt cctcgtctag gaactcttta 1680 taggacgagg taggtcctgg attgcagagg aagatagtgg gaattccacc tttaatttga 1740 acgggtttcc cgtatttcgt gttggactgc cagtccctct gggaccccat gaattcctta 1800 aagtgcttta ggtagtgagg atcgacgtca tcaatgacgt tgtaccaggc atcattatta 1860 aagacctttg gactaaggtc caggtgtcca cacaggtaat tgtgtgggcc taaagatctg 1920 gcccatatcg tcttccctgt tctgctatca ccttctatga caatactatt gggtctccat 1980 ggccgcgcag cggaatcccg aacattatca gcgacccatt cgtcaagttc aacaggaact 2040 tggcaaaagg aagaacatgt gaagggagaa acataaggag ctgggggctc ctggaaaatc 2100 ctttctaaat tactatttag attatgaaac tgaagtacaa agtcctttgg gactaattcc 2160 ctaatgacat taagagcctc tgacttactg ccgctgttaa gcgctttggc gtaagcatca 2220 ttcgctgatt gttgacctcc tctagcagat cgtccatcga tctgaaatcg tccccattcg 2280 acggtgtctc cgtccttatc cagataggac ttgacatctg agctggattt ggcaccttga 2340 atgttggggt ggaaacgggt gctacagctc gggtgtacac aatcgaagag acgattgttc 2400 gtaatcgtga ttttgccctc gaattggatg agggcatgca agtgaggttc cccattctga 2460 tgcagctccc tacagatttt aatgaactta gggtttgatg ggagagagag tgtttgaatg 2520 aatgacagca ggtgttcttt gggtatagaa cactttgggt atgtgagaaa gacattcttg 2580 gcttgaactc taaaacgagg agtcctcatc ttgaccaagt caattggaga cactcaacta 2640 gagacactct tgagcatctc ctcctgttaa ttggagacat tatatagttg tctccaaatg 2700 gcattctggt aataagtgga actttaattt gaatgaaaag gctcaaaagg cgcagaacac 2760 ccaaggggcc aaccgta 2777 //