ID AF076470; SV 1; circular; genomic DNA; STD; VRL; 8016 BP. XX AC AF076470; XX DT 29-JUL-1998 (Rel. 56, Created) DT 08-JUN-2001 (Rel. 68, Last updated, Version 3) XX DE Rice tungro bacilliform virus Serdang strain, complete genome. XX KW . XX OS Rice tungro bacilliform virus OC Viruses; Ortervirales; Caulimoviridae; Tungrovirus. XX RN [1] RP 1-8016 RX DOI; 10.1006/viro.1998.9519. RX PUBMED; 9918890. RA Marmey P., Bothner B., Jacquot E., de Kochko A., Ong C.A., Yot P., RA Siuzdak G., Beachy R.N., Fauquet C.M.; RT "Rice tungro bacilliform virus open reading frame 3 encodes a single 37-kDa RT coat protein"; RL Virology 253(2):319-326(1999). XX RN [2] RP 1-8016 RA de Kochko A., Marmey P., Brizard J.P., Beachy R.N., Fauquet C.; RT ; RL Submitted (02-JUL-1998) to the INSDC. RL Cell Biology, ILTAB/ORSTOM/TSRI, 10550 N. Torrey Pines Rd., San Diego, CA RL 92037, USA XX DR MD5; 81792dd399b43d2f07119b3507f71683. DR EuropePMC; PMC6522785; 31097500. XX FH Key Location/Qualifiers FH FT source 1..8016 FT /organism="Rice tungro bacilliform virus" FT /strain="Serdang" FT /mol_type="genomic DNA" FT /country="Malaysia" FT /db_xref="taxon:10654" FT CDS join(8016,1..668) FT /codon_start=1 FT /transl_except=(pos:66..68,aa:OTHER) FT /product="unknown" FT /note="a fragment of this polypeptide is associated with FT the ORF4 translation product after splicing of the mRNA; FT ORF1; leaky stop codon; mechanism unknown" FT /db_xref="UniProtKB/TrEMBL:O90303" FT /protein_id="AAC27709.2" FT /translation="MVSERCSNFKGKHEYNLVELITXVPKRNLTSQNIESRYEKLEFLD FT LAVWGKEKKQKYCLSTDNISFYWYFDTSKTSESERKHTFHSDNKQLNSIGDLIIKHSEK FT TKNIKEEIRKYSQFLDKILDLKPSKNQIEKLLEIQNIIHKNFDYIKEQNAQLEKSLRKP FT VKLEDSINTLLVEIQQARPKEVELRTLKIAEQNSKAIEKFEQEIKDLREILEYLKHQST FT " FT CDS 665..997 FT /codon_start=1 FT /product="DNA binding protein" FT /note="ORF2" FT /db_xref="InterPro:IPR009417" FT /db_xref="UniProtKB/TrEMBL:O90300" FT /protein_id="AAC27710.1" FT /translation="MSADYPTFKEALEKFKNLESDTAAKDKFNWVFTLENIKTTADINL FT ASKGLVQLYALQEIDKTDDILTTQVSKLPTTSGISSAGAIVPAGSNTQGQYKAPPKKGI FT KRKYPA" FT CDS 994..6021 FT /codon_start=1 FT /product="polyprotein" FT /note="encodes a polyprotein which is cleaved by aspartic FT proteinase to give a putative movement protein, a coat FT protein, a proteinase, and a replicase which has a reverse FT transcriptase activity, a DNA polymerase DNA dependant FT activity, and a RNAse H activity; ORF3" FT /db_xref="GOA:O90301" FT /db_xref="InterPro:IPR000477" FT /db_xref="InterPro:IPR001969" FT /db_xref="InterPro:IPR028919" FT /db_xref="InterPro:IPR034728" FT /db_xref="InterPro:IPR041373" FT /db_xref="UniProtKB/TrEMBL:O90301" FT /protein_id="AAC27711.1" FT /translation="MNIRPFNGTSRTINQDSTSESNIKKGKNSTKRELIEEVDVNQDVE FT NFDWKKLSGIKPNKLYEKNWQEKVKLKQQSIVSAYKEEAISVTHNAYTTTLFPQEVIKN FT VKNQGKLYYHIGMMAIGVKGLHRRKIGTKVMIMSYDDSFGKAREASIGSIEMDMNAGCG FT VFYSCPDFAKYIKDLSHLKIGIQTLGYENYEGKNLSVAIKTIGRLTTNIQSKYKINVKD FT IVEQISSQGIIMVAPMEIDSSHLDGNEWDLSKFLNQENTSRVPTKALIYQNLHGGESLR FT FSNYKQTRMHDLTENNSDEDEDLKILGEQLNIKMARFYTMETPEEELRAVIQQLEREKQ FT AMVEKLEAKMKESSKMAIVEDNFNPNNEYLEDTYSEYEDLEFERLGLTGWEDLDQDSLE FT TKEITEWENPNQVLHREIRAYKSVSEQIEDIFGELLKEHGNYDMALKNLEEKYDLDKIE FT KAKSIEEIAKSSTSSEIRPTKRPKEEQTAYEDDMRDDWKRKELTVNPIEASKDRNFERI FT GGSYKKNFYPSRSEILNLDNVPPQFYYDQLVTWEGIVKNEWEARKKDGMDMWSWMDGRI FT TGLVLYLVQDWISKNQAAYNDIKSRGDRPENFVKMVKDRFLIEDPTDERRTALQRLAQR FT ELEALNCEDPTKIQPFMAEYLKKASEAKKGFDIIYVERLFDRLPEAVGKVVKADFVKDG FT NSYEAGIGIAVSYISTWMRAKCIKETEAKTQKKASLAFCRSIYTIGDYKKRKILKRVTN FT YNKNRRKNYVRRPSIKKKCRCYICQDENHLANRCPRRYTNQARASIIEGLDEDIVSIAS FT DDEDIENFLEIIELDEFIAHSSQEHEHTWEIGGKKDKVCEICSYFTDYNKTVSCKICET FT QYCKTCSDQLAIEVREIKKPTKEEEMIEDLKLNVKNLEFRVTILEHKAEMQHIQDKFEA FT MQIRNKPEITEISEATTSLAMRANESNYIKTSINKTAGCYVETKISFNNENRIITALID FT SGSTHNIICPTLIPASWINSTHREIIMFAVDNSKYNLNQELIDDIKLQFQEVDETFGIK FT YKLGQTYVAPKPTKTFIIGHRFLTNENGSVTIHKDYITIQKTTGIYPTARHELKSEFAR FT KHGGRPPLFSNIPETYNKIPPLHSYQPIIGYKNEIGDQSLITMIKELEALGFIGDDITK FT NRTTWVCDFKIINPDINITCATIPYTPADKEIFEKQIKELLDNKLIKKASPTCRHRTAA FT FIVRNHAEEVAQKPRIVYNYKRLNDNMHTDPFNIPHKISMINLIQKANIFSKFDLKAGF FT HHMKLKEDFKDWTTFTCSEGLFTWNVCPFGIANAPCAFQRFMQESFGDLKFALLYIDDI FT LIASSNEQEHIKHLKIFFNRVKEVGCVLSKRKSKMFLKEVEYLGVEIKEGKISLQPHIV FT EKIKRFDKSKLSTLKGLQAYLGLLNYARSYIKDLSKLVGPLYKKTGKSGQRSFNKEDWN FT IIFKIEREISKIKPLERPKESDYIIIETDASEEGWGAVLLCKPDKYASKDTEKIAGYAS FT GNFGEKKTWTSLDYEIEAINEALNKFQIYLDKDFTIRTDCEAIVKGIKTEDYKKRSKTR FT WIKLRDNLLKDGYKPTFEHIKGTKNFLPNFLSREGDFILKCLQNPDSIESHSIDSQESV FT PLYIDSKESHSIESDDSIPLYRDKLLPLVERLKEKSA" FT CDS 6042..7211 FT /codon_start=1 FT /product="unknown" FT /note="similar to the caulimovirus transactivator factor FT inclusion body protein; ORF4" FT /db_xref="InterPro:IPR009347" FT /db_xref="UniProtKB/TrEMBL:O90302" FT /protein_id="AAC27712.1" FT /translation="MNIEYPYSIHIIDKNKVPIYDQGNLFHTEKSARLSHVSRGLLDHL FT FTFSSDNTERVRKLHILADYLYLLESERESYKNEWISLNDQVSTLQKQNSELRARIATN FT KEIIEGLREPVKKPIYTTQDKERLRVFFCEERSMEYIYYHIKRLAQQSYYSHLNKLQKD FT CEPFRGVYMSFLTNVKFLVLCEAGYWTVPDIEDNTTESLLSLSQKKGEDLLQKGVVIFN FT ELEGGYQLSPRFIGDLYAHGFIKQINFTTKVPEGLPPIIAEKLQDYKFPGSNTVLIERE FT IPRWNFNEMKRETQMRTNLYIFKNYRCFYGYSPLRPYEPITPEEFGFDYYSWENMVEED FT KEEVVYISKNTKDYKVTKEHAWAWPEHDGDTMSCSTSIGEEWIHRMANA" XX SQ Sequence 8016 BP; 3285 A; 1220 C; 1460 G; 2051 T; 0 other; tggtatcaga gcgatgttcg aactttaagg gaaaacatga atacaatcta gtcgaactaa 60 ttacataagt tccaaagagg aatcttactt ctcaaaatat tgagtctcgt tacgaaaaac 120 ttgaattctt agatttagca gtctggggaa aagagaaaaa acaaaaatat tgtttatcta 180 ctgataatat tagtttttat tggtattttg ataccagtaa aactagtgag tcggaaagaa 240 agcatacctt tcattctgat aataagcaac ttaatagtat tggagatctt attattaagc 300 attctgaaaa aaccaaaaat attaaggaag aaattagaaa atatagccag ttcctagata 360 agatattaga tttaaaacct tctaaaaacc aaattgaaaa attattggaa atccaaaata 420 taatccacaa aaactttgat tatatcaaag aacaaaacgc tcagctagaa aaatccttaa 480 gaaagccagt taagctagaa gactctatta atactttact agtagaaata caacaagcta 540 gacctaagga agtagaatta agaactctta aaatagcaga acaaaactct aaggcaatag 600 aaaaatttga acaggaaatt aaggacctaa gagaaatctt agaatacctt aagcaccaat 660 ctacatgagc gctgattatc caactttcaa ggaagccctt gaaaagttta aaaacttaga 720 atcagataca gccgctaaag ataagtttaa ttgggtattt actctagaaa atataaaaac 780 aactgcagac ataaatctag catctaaagg tttagtacaa ctatacgctt tacaagaaat 840 tgataaaaca gatgatattc ttacaaccca agttagtaag ttacctacaa ctagtggaat 900 tagttcagca ggagctatag tacctgcagg aagtaacacc caaggtcaat ataaagcacc 960 acctaagaag ggaattaaaa gaaaatatcc agcatgaata taagaccatt taatggtact 1020 tctagaacta taaaccaaga ttcaacctct gaatctaata ttaaaaaagg aaaaaattca 1080 acaaaaagag aattaataga agaagtagac gttaatcaag atgtagaaaa ctttgattgg 1140 aaaaaattat cagggattaa acctaataag ctatatgaga aaaattggca agaaaaggtt 1200 aaattaaaac aacaatctat agtttcagca tataaagaag aagccattag cgtaacgcat 1260 aatgcatata ctactacttt atttcctcaa gaagtaatta aaaacgttaa aaatcaggga 1320 aaactttatt accatatagg catgatggcc ataggagtta aaggacttca tagaagaaaa 1380 ataggaacta aagtcatgat aatgtcttat gatgatagtt tcggtaaagc tagagaagct 1440 agcattggat caatagaaat ggatatgaat gcaggttgcg gagtattcta ctcctgtccc 1500 gactttgcaa aatatattaa agatttatca catcttaaga taggaataca aaccctagga 1560 tatgaaaatt atgaaggaaa aaacctttca gtagcaatca aaactatagg gagattgacc 1620 acaaatatac agtcaaaata taagataaat gtgaaagata ttgtagaaca aatatcgtca 1680 caaggaatta ttatggtagc acccatggaa atagattcat cacacttgga tgggaatgaa 1740 tgggatctta gtaaattctt aaatcaagaa aacacaagta gagtcccgac caaagcccta 1800 atatatcaga atttgcatgg aggagaatct ttaagatttt caaactataa gcaaactaga 1860 atgcatgatc tgactgaaaa taattcagac gaagatgaag atttaaaaat cttaggagaa 1920 caactaaaca tcaaaatggc aagattctat acaatggaaa cgccagaaga agaattaaga 1980 gcagtaatcc aacaattaga aagagaaaaa caagccatgg tagaaaaatt agaagctaag 2040 atgaaagaat catctaaaat ggcaatagta gaagataatt ttaacccaaa caacgaatat 2100 ctagaagata catattctga gtacgaagat ctagaatttg aaaggttagg attaactgga 2160 tgggaagatt tagaccagga ctctttagaa accaaagaaa taactgaatg ggaaaatcct 2220 aatcaggtac tccatagaga aattagagca tataaatcag tatcagaaca aatagaagat 2280 atatttggag aactattaaa agaacatgga aactacgata tggcccttaa aaacctagaa 2340 gaaaaatatg atttagataa aatagaaaag gccaaatcta tagaagaaat agctaagtca 2400 tccacatcat cagaaataag gccaaccaaa cgacctaaag aagaacaaac agcttatgaa 2460 gatgatatga gggatgattg gaaaagaaaa gaattaacag taaatcccat agaagcctca 2520 aaggatagaa actttgaaag aataggagga tcctataaga aaaactttta tcctagtagg 2580 agtgaaatat taaacttaga taacgttccc ccacaatttt actatgacca attagtaacc 2640 tgggaaggaa tagtaaaaaa tgaatgggaa gcacgaaaaa aggatggaat ggatatgtgg 2700 tcttggatgg acggtagaat aacaggatta gttctatatt tagtccaaga ttggatttct 2760 aaaaatcaag cagcctacaa tgatataaaa tctagaggag atagacctga aaactttgtt 2820 aaaatggtaa aagataggtt cttaatagaa gatcctacag atgaaaggag aacggcacta 2880 caaaggttag cacaaagaga attagaagcc ttaaattgcg aagatcctac caaaattcaa 2940 ccatttatgg ctgaatatct taagaaagct tcagaagcta agaaaggatt tgatataatt 3000 tacgtagaaa gactcttcga tagattaccc gaggcagtag gaaaggtagt aaaagccgac 3060 tttgtcaaag atggtaattc ttatgaagca ggaataggaa tagctgtttc atatatatct 3120 acatggatga gagcaaaatg catcaaagaa acagaagcta aaactcaaaa gaaagcatca 3180 ctagcatttt gtagatccat atataccata ggagattata agaaacgaaa aattttaaaa 3240 agagtcacaa actataataa aaatagaaga aaaaactatg ttagaagacc gagtatcaag 3300 aaaaaatgta gatgttatat ctgccaggat gaaaatcatc tagctaatag atgccctaga 3360 agatatacca atcaggctag agcaagtata atagaaggat tagacgaaga tatagtatct 3420 atagcatcag atgatgaaga tatcgaaaat ttcctcgaaa taatagaact tgatgaattt 3480 atagcacatt ctagtcaaga acatgaacat acatgggaaa ttggaggaaa gaaagataag 3540 gtatgtgaaa tatgcagtta ttttacagat tataataaaa ctgttagctg taaaatctgt 3600 gaaactcaat actgtaaaac atgttctgat caactagcaa tagaagtaag agaaattaaa 3660 aaacccacaa aagaagaaga aatgatagaa gatctaaaat taaatgttaa aaatctagaa 3720 tttagagtta ctatcctaga acataaagca gaaatgcaac atatacaaga taaatttgaa 3780 gcaatgcaaa ttagaaacaa accagaaata acagaaatat cagaagcaac gacttcatta 3840 gctatgagag caaatgaatc aaactatata aaaacatcaa ttaataaaac cgccggttgt 3900 tatgtcgaaa caaaaatctc atttaataat gaaaatagaa tcataacagc actaatagat 3960 tccggttcaa cacataatat aatatgtcca acattaatac cagcatcttg gattaatagc 4020 acgcatagag aaattataat gtttgccgta gataatagca aatacaacct gaatcaagaa 4080 ttaatagatg atataaaact acaattccaa gaagttgatg aaacttttgg aataaaatat 4140 aaattaggac aaacctatgt agcacctaaa ccaacaaaaa ccttcataat aggacatcga 4200 ttcctcacaa atgaaaatgg tagtgttaca attcataaag actatataac tatacaaaaa 4260 actacaggca tatacccaac agccaggcat gagcttaaat cagagtttgc gcgaaagcat 4320 ggtggacgcc cgccattatt ttcaaacatt cctgaaacct acaataagat tcctcctcta 4380 cattcatatc aaccgataat aggatataag aatgaaatag gagatcaaag tttaataact 4440 atgataaaag agttagaagc acttggattt ataggagatg acatcacaaa aaatagaaca 4500 acatgggtat gtgatttcaa aatcataaat ccagatatta acatcacttg tgcaacaatt 4560 ccatatacac cagcagataa agaaatattt gagaagcaga taaaagaatt actggataat 4620 aagctaataa agaaagcaag tccaacttgt agacatagaa cagctgcatt catagtaaga 4680 aatcatgctg aagaagtagc acaaaaacca aggatagttt ataattataa aaggttaaat 4740 gataatatgc atacagatcc gtttaatata cctcataaga tttctatgat taatcttata 4800 cagaaagcta atatattctc taagtttgat ctaaaggcag gatttcatca tatgaaactt 4860 aaagaagatt tcaaagattg gacaactttt acttgttctg aaggattatt tacatggaat 4920 gtctgtccat ttggtatagc taatgctcct tgtgcatttc aaagatttat gcaggaatcc 4980 ttcggagatt taaaatttgc attattatat attgatgata tactcattgc atcaagcaat 5040 gaacaagaac atattaagca tctaaagata ttcttcaata gagttaaaga agtaggatgc 5100 gtgcttagca agagaaaatc aaaaatgttc ctaaaagaag tagaatattt aggagttgag 5160 ataaaagaag gaaagatcag ccttcagcca catatagtag aaaaaatcaa aagattcgat 5220 aaaagcaagt tgagtaccct aaaaggccta caagcatatc taggattact caattatgct 5280 agaagctaca ttaaagactt atcaaagcta gtaggaccac tatataaaaa gactggaaag 5340 agtgggcaga gaagctttaa taaagaagat tggaatataa tctttaaaat agaaagagag 5400 atatcaaaga taaagccact agagaggcct aaagaatcag actacataat aattgagacc 5460 gatgcatcag aagaaggttg gggagcagtc ttactctgca aaccagataa atatgctagt 5520 aaagatactg aaaaaatagc aggctatgca tcaggaaact ttggagaaaa gaagacttgg 5580 actagtttag attatgaaat agaagctata aatgaagcgc taaacaagtt ccagatatat 5640 ttagacaaag attttacaat cagaacagac tgtgaagcaa tagtaaaagg aataaaaaca 5700 gaagattata agaagagatc taagactaga tggatcaagt taagagataa ccttctgaaa 5760 gatggttata agcctacctt tgagcatatc aaaggaacaa aaaacttttt accaaacttc 5820 ttatcccgcg agggagattt tattttaaaa tgtcttcaaa atcccgattc tattgaatca 5880 cattctatag attcgcaaga atcagttcca ctatatattg attcgaaaga atcacattct 5940 atagagtctg atgactcaat tccactatac agggacaagc ttcttcctct agtcgaaagg 6000 ctaaaggaga aaagtgctta accaagattg gaggcatcac catgaatata gagtacccgt 6060 actcaatcca cataatagac aaaaacaagg ttccgatcta cgatcaagga aatctcttcc 6120 acactgagaa gtctgcaaga ctttcacacg tgtccagagg tttgctagat catctcttta 6180 ctttttcatc tgataatact gagcgagtta ggaagctcca catattagcc gattatcttt 6240 acctattaga aagtgagaga gagtcatata aaaatgagtg gattagcctg aatgatcagg 6300 ttagtactct acaaaaacaa aatagtgagc tgagagctag gatagccaca aataaagaaa 6360 taatagaggg actgagagag ccagttaaaa agccaatata cacaacccaa gataaagaga 6420 ggctccgtgt cttcttttgc gaagaaagaa gcatggaata tatatattat catataaaaa 6480 gactagctca gcagagctat tactcccatt taaataaatt acagaaggat tgcgaaccct 6540 ttcgaggggt ttatatgtct ttcttaacta atgttaaatt cctagtacta tgtgaagctg 6600 gatactggac cgttccagat atagaagaca atactacaga gtctttatta agtttatctc 6660 agaagaaagg agaagattta ctacaaaaag gagtggtaat atttaatgag cttgaaggag 6720 gttatcaact ttctccaaga ttcattggag acctttatgc tcatggcttt attaaacaaa 6780 taaacttcac aaccaaggtt cctgaaggat taccgccaat catagcggaa aaacttcaag 6840 actataagtt ccctggatca aacacagttt taatagaacg agagattcct cgctggaatt 6900 ttaatgaaat gaagagagaa acacagatga ggaccaactt atatatcttc aagaattatc 6960 gttgtttcta tggctattca ccattaaggc catatgaacc cataactcct gaagaatttg 7020 ggtttgatta ctatagctgg gaaaatatgg ttgaagaaga caaggaggaa gtagtataca 7080 tctccaagaa tactaaggat tataaggtca ccaaagagca tgcatgggct tggccagaac 7140 atgacggaga tacaatgtcc tgcagtacat caataggaga agaatggatc catcgtatgg 7200 ccaatgctta aagtagcttt aactaaagca actttgggca ggaatcaata aagaaggacc 7260 agaagatata aagcgggaac atcttcacat gctacctcgt ggcaagcatc tttgctttag 7320 catctttgct ttacaattat tgtaagagtg tgtaaagacc agtgtgccct taggctccag 7380 tatataagga gcaccaaggt attgtaataa gcattcgaaa tcgatcaagc aagcgagagc 7440 caaaacttct aagagagcaa gagaggagct tatcctctca cccctcttca agaagcaaag 7500 gcgatcaatg gctcaggtca gtgagtagtc gtctttaagg ttcctctagg aacctctgtg 7560 taatatgttt gtacttatga ttgtatttct caaaaaccta tccgctgcat gaataaagct 7620 cttatattta tcctacaccc ttgtgataaa atatgaagtc atactcgttc taagattaaa 7680 tgttctaaga atacttcgaa gcattgaaaa gggggctaaa gggggaaaaa gtaccgtcag 7740 gcccgtgtta tggcaaggga agaagtacca tgaataccct atagatgtta gaaggaaggt 7800 aagaactaag tatcttatga acaatgagta gctgatttct gattatcagt aacaagtatc 7860 gttacaatct ataagctttg aaagatctat tagtgtggat accaaaaggc tgtcgtggtt 7920 cgcccagtcg acggatgagg tcataaacga agcactagtg ggtaactaag aggcttaggg 7980 atgagctacg agaaaagtta ggggggtgcc tagaaa 8016 //