ID   AF039530; SV 1; circular; genomic DNA; STD; VRL; 2704 BP.
XX
AC   AF039530;
XX
DT   29-DEC-1998 (Rel. 58, Created)
DT   15-APR-2005 (Rel. 83, Last updated, Version 4)
XX
DE   Sugarcane streak Egypt virus - [Man], complete genome.
XX
KW   .
XX
OS   Sugarcane streak Egypt virus - [Man]
OC   Viruses; Geminiviridae; Mastrevirus.
XX
RN   [1]
RP   1-2704
RX   DOI; 10.1007/s007050050647.
RX   PUBMED; 10664387.
RA   Bigarre L., Salah M., Granier M., Frutos R., Thouvenel J., Peterschmitt M.;
RT   "Nucleotide sequence evidence for three distinct sugarcane streak
RT   mastreviruses";
RL   Arch. Virol. 144(12):2331-2344(1999).
XX
RN   [2]
RP   1-2704
RA   Bigarre L., Salah M., Granier M., Nicole M., Peterschmitt M.,
RA   Thouvenel J.C.;
RT   ;
RL   Submitted (22-DEC-1997) to the INSDC.
RL   CA-phyma, CIRAD, BP 5035, Montpellier 34080, France
XX
DR   MD5; 7f2f80f489af25a3f066474a8a79ccb6.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2704
FT                   /organism="Sugarcane streak Egypt virus - [Man]"
FT                   /strain="Mansoura"
FT                   /mol_type="genomic DNA"
FT                   /db_xref="taxon:268786"
FT   misc_feature    join(2554..2704,1..131)
FT                   /note="long intergenic region (LIR)"
FT   gene            132..449
FT                   /gene="V1"
FT   CDS             132..449
FT                   /codon_start=1
FT                   /gene="V1"
FT                   /product="putative movement protein"
FT                   /note="MP"
FT                   /db_xref="GOA:Q9YXD5"
FT                   /db_xref="InterPro:IPR002621"
FT                   /db_xref="UniProtKB/TrEMBL:Q9YXD5"
FT                   /protein_id="AAC98084.1"
FT                   /translation="MDGSGGALPALPQSVLPRVPSPPPSAGVLPWSRVGEIVNFTFVAL
FT                   VALYLLWLWVLRDLIFLVKARRGISTEEVSFGTSDLVGSQAPTPVGVSASCPPGPVPFT
FT                   A"
FT   gene            446..1209
FT                   /gene="V2"
FT                   /note="synonym: CP"
FT   CDS             466..1209
FT                   /codon_start=1
FT                   /gene="V2"
FT                   /product="coat protein"
FT                   /db_xref="GOA:Q9YXD4"
FT                   /db_xref="InterPro:IPR000143"
FT                   /db_xref="InterPro:IPR000263"
FT                   /db_xref="UniProtKB/TrEMBL:Q9YXD4"
FT                   /protein_id="AAC98085.1"
FT                   /translation="MPLAGSKRKRADEVAWSRRGTKKKPERTSAARAGPSRRIRPPLQI
FT                   ATFVAAGQSMVSVPSGGVCELLGSYARGADEANRHTNETVTYKVALDYHFVATAAACKY
FT                   SSIGTGVAWLVYDAQPTGNTPTTKDIFGYSDSLVAFPYTWKVSREVCHRFVVKRRCTFT
FT                   METDGRIGSDVPPANTSWSPCKRAIYFHKFFTGLGVKTEWKNLTDGGVGAIKKGALYLV
FT                   IAPGNGLEFTCHGQARLYFKSVGNQ"
FT   misc_feature    1210..1408
FT                   /note="small intergenic region (SIR)"
FT   gene            complement(1409..>1816)
FT                   /gene="C2"
FT   CDS             complement(1409..>1816)
FT                   /codon_start=1
FT                   /gene="C2"
FT                   /product="RepB"
FT                   /db_xref="UniProtKB/TrEMBL:Q9YJN8"
FT                   /protein_id="AAC98087.1"
FT                   /translation="RIQNIPGHRKQSLYILGPTRTGKSTWARSLGRHNYWQNNVDWSSY
FT                   DEEAVYNIIDDIPFKFCPCWKQLVGCQKEYVVNPKYGKKKKVASRSIPSIILANEDEDW
FT                   LTVMTPGQREYFEANAVIYIMTAGEKFYKPA"
FT   gene            complement(1726..2553)
FT                   /gene="C1"
FT   CDS             complement(1726..2553)
FT                   /codon_start=1
FT                   /gene="C1"
FT                   /product="RepA"
FT                   /db_xref="GOA:Q9YXD3"
FT                   /db_xref="InterPro:IPR001146"
FT                   /db_xref="InterPro:IPR001191"
FT                   /db_xref="InterPro:IPR022690"
FT                   /db_xref="InterPro:IPR022692"
FT                   /db_xref="UniProtKB/TrEMBL:Q9YXD3"
FT                   /protein_id="AAC98086.1"
FT                   /translation="MTTVGSTESGSAIRSFKHRNVNTFLTYSKCHLEPEAVGLHLWSLI
FT                   GHWNPAYIVVSREAHADGSWHIHALAQSVKPVQTTNPRFFDIEDFHPNIQSAKSADRVK
FT                   EYVLKNPIKHWEKGTFIPRKKSFATTSSEDRQPKPTKDDIVRDIIEHSTSKQEYLSMIQ
FT                   KALPYEWATKLQYFEYSASRLFPETAEVYTNPHPATEPDLINFETIEDWLPNIYQVSPE
FT                   AYMLLTPTCLTLEEAISDLEWMQSASRTSQGTGNSLSTSLGQQEQGNQPGPEA"
XX
SQ   Sequence 2704 BP; 571 A; 651 C; 756 G; 726 T; 0 other;
     accgcgctct ctcatgcgag gcccaccagg ccgagcggtc ctgctttggg gccctatgtc        60
     tttcgttaaa gcctgtatgt aattaggcgc tttggatcgc atataagttc gtgcccaggc       120
     tcagtggtgc tatggacggc tctggaggag cgttgcctgc tttgcctcaa agtgttctgc       180
     cgcgggtacc ctcgccacct ccgtctgccg gagtgctgcc gtggagtcgc gtcggtgaga       240
     tagtgaattt cacctttgtt gctttagtag ctctgtacct gttatggttg tgggtgctga       300
     gagatcttat cttccttgtt aaggctcgcc gcgggatctc aacggaggag gtgagctttg       360
     gtacgtcaga tctggttggt tcgcaggctc caacgccggt cggtgtctct gctagctgtc       420
     cgccgggacc tgtgccgttc acggcctagg tagccctcag ccaccatgcc tcttgccggc       480
     agcaaaagga agagggccga tgaggtggcc tggtctaggc gtggcactaa gaagaagcca       540
     gagcgtacat ctgccgctcg ggctggtccg tctaggcgga ttcgtccacc cctgcagata       600
     gccacgtttg tggcagccgg tcagtctatg gtgtctgtcc cttccggtgg tgtttgtgaa       660
     ctgctgggct cctatgctcg aggcgctgac gaggccaacc gtcacaccaa cgagactgtc       720
     acgtacaagg ttgccttgga ctaccacttc gttgctactg cagccgcctg caagtattcc       780
     agcattggca ctggcgtggc ctggttggtg tatgatgcac agcctaccgg aaataccccg       840
     acgacgaagg acatcttcgg ctatagtgac tcccttgtgg cgttccccta cacatggaag       900
     gtttcaaggg aggtgtgtca tcgcttcgtg gtgaagagga gatgcacttt cacgatggag       960
     accgacggtc ggattgggtc ggatgttcct ccggcgaata cctcatggtc gccttgtaag      1020
     cgggcgattt acttccataa gttcttcacc ggcctgggtg tgaagacgga gtggaagaat      1080
     ctcacagacg gtggtgtggg agcgattaag aagggtgcgt tgtacctggt cattgcccct      1140
     ggcaatggtc tagagtttac ctgccatggg caggcccgtc tgtactttaa atcagttggg      1200
     aatcagtgat tccctacaga ataataaaac aagttttata attccattga tattggacga      1260
     agtacaatac agaatacaat gtctgcagat gtgcagacga caacattaaa ctggttttgt      1320
     gtgtcgcgag ggggaacccg gagcacgctc ccaaaacacc caacacacac acacccaact      1380
     gaagattatt gaacatgcag ccgccggcct aagcaggctt gtagaacttc tcgcctgctg      1440
     tcataatgta tatgaccgcg tttgcctcga agtactcccg ttgtccggga gtcatcaccg      1500
     tcagccagtc ctcatcctcg ttggctagga ttattgatgg aatgcttctg gaagctacct      1560
     tcttcttctt accgtacttc gggttgacga cgtactcttt ctggcagcca accagctgct      1620
     tccagcaagg acagaacttg aagggtatat catctatgat gttatagact gcttcctcat      1680
     cataggaaga ccagtccaca ttattctgcc agtagttgtg gcgccctagg cttctggccc      1740
     aggttgattt ccctgttctt gttggcccaa ggatgtagag agactgtttc ctgtgccctg      1800
     ggatgttctg gatgcggatt gcatccattc taagtcagag attgcttcct caagggttaa      1860
     gcaggtagga gtaagcagca tgtaggcctc tggactaacc tgatagatgt tggggagcca      1920
     atcttctatg gtttcgaagt taatgaggtc cggttcagtg gcaggatgag gattggtgta      1980
     tacttctgca gtctcaggga acaatctgga ggctgagtac tcaaagtact ggagcttcgt      2040
     tgcccactcg taggggagtg ccttctgaat cattgaaagg tactcttgct tggaggtgga      2100
     gtgttcgatg atatctctca cgatatcatc ttttgtgggt ttaggttgcc tatcctcaga      2160
     tgaagtggta gcaaatgatt tcttgcgtgg gatgaaagta cctttctccc agtgtttgat      2220
     cgggtttttg agcacgtatt ccttgaccct gtctgcggac ttggcactct gaatgttagg      2280
     atggaaatcc tcaatgtcaa agaacctagg gttcgtagtt tgtacaggct tgacgctctg      2340
     agctaaggca tggatatgcc aggatccatc agcatgagct tccctgctca cgacgatgta      2400
     cgctggattc cagtgaccta tgagactcca gagatggagc ccaacagctt caggttctag      2460
     atggcacttg gaatatgtga ggaatgtgtt tacgttcctg tgcttgaagg aacggatggc      2520
     agagcctgac tctgttgatc ctacggttgt catggctggg cgagaggtct gattctgagt      2580
     ctcaactaac tctccaacag gtttgcgaat cgaaatccga cctcccgtct tatataggag      2640
     ttaagttggg ccgggccgga atttttttct gggccgcaat gagagagcgc aaaccgataa      2700
     tatt                                                                   2704
//