ID AF038665; SV 1; linear; genomic RNA; STD; VRL; 5163 BP. XX AC AF038665; XX DT 31-OCT-1998 (Rel. 57, Created) DT 03-FEB-1999 (Rel. 58, Last updated, Version 2) XX DE Sphaeropsis sapinea RNA virus 1, complete genome. XX KW . XX OS Sphaeropsis sapinea RNA virus 1 OC Viruses; Riboviria; Totiviridae; Victorivirus. XX RN [1] RP 1-5163 RX DOI; 10.1006/viro.1998.9480. RX PUBMED; 9878619. RA Preisig O., Wingfield B.D., Wingfield M.J.; RT "Coinfection of a fungal pathogen by two distinct double-stranded RNA RT viruses"; RL Virology 252(2):399-406(1998). XX RN [2] RP 1-5163 RA Preisig O., Wingfield B.D., Wingfield M.J.; RT ; RL Submitted (15-DEC-1997) to the INSDC. RL Genetics, University of Pretoria, Hill Crest, Pretoria 0001, South Africa XX DR MD5; f080be823e202c7ce5e512b1c806c141. DR EuropePMC; PMC3597494; 23516364. DR EuropePMC; PMC3659425; 20976609. XX FH Key Location/Qualifiers FH FT source 1..5163 FT /organism="Sphaeropsis sapinea RNA virus 1" FT /mol_type="genomic RNA" FT /db_xref="taxon:73497" FT CDS 80..2581 FT /codon_start=1 FT /product="coat protein" FT /note="ORF1" FT /db_xref="GOA:Q9YXE7" FT /db_xref="InterPro:IPR008871" FT /db_xref="UniProtKB/TrEMBL:Q9YXE7" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="AAD11600.1" FT /translation="MPPISTAQWYHSLLLKSLFVNRFRQSSLFGGRVPLIPNTTIDGYI FT TTHQHHTTPNFPMEHALRNAFLAAVIASPRGGTLLTAPTKKGKEKKAPLATYRRYRANI FT RTESTIAGNVDARVAGIQYEIGARYERVGEAFAPVPEEQVLFEAAYPSSAALAEDFVGF FT ARKYSNFSATFAHSSLAGLVERVARTLGALTVFPSGTFDQDAIRGGRPLMIAALGTLDG FT PVNSLAGSVFIPRLVDSVISPDVFTILINAAAGEGSRVITDVLELDATTRRPIVPTLRD FT SSMLLPCVEALRILGANMAACDQGPLFAFALVRGLNAVLSLVGHTDEAGVTRDIFRVSG FT FDIPFGGIHFGLEPYAGLPAVASNAGADACCYVDALLMTSGALVAHCDPGQEYGGRWFP FT TVLQGTGPDTAEVRPGQSQEGTADMANRNRGLLASSMPRFAEHYARGLGRLFAIEGDAR FT IVVNILSASARLLPDNCRHLRYPSVSPYFWVEPTSLLPPDFLGTAAELNGCGSLAMRGT FT SRTRQAWEDIERVGDEDVTFTGYNVAMPFARSSWFLIHWLNHPANGLGALRVRQLDPNG FT VIHPGPCADNPDVRDRVEASLPITDYLWVRGQSPFPAPGEFLNLTGTLGLLARHLTMDD FT DGIPTEEHLPTGREFRDTAVTVVAGRPVGLPNGAHNAYDSQARRARTRATRELAASAAR FT ARLYGRATVAEMPILTSAPVLRAAPPRPEAVNPMEGGGPGHDLARHSGMGRHTYPPDRE FT QRGDPAVPVPQHQALRAPQMPRPGPNPQGGGVIPPPPPLPPSGGGDGSGPSSGGSCAQE FT DTNPAPPVAPGPAQPDGPANE" FT misc_feature 251 FT /note="alternate position for initiation methionine" FT CDS 2574..5090 FT /codon_start=1 FT /product="RNA dependent RNA polymerase" FT /note="ORF2" FT /db_xref="GOA:Q9YXE6" FT /db_xref="InterPro:IPR001795" FT /db_xref="UniProtKB/TrEMBL:Q9YXE6" FT /protein_id="AAD11601.1" FT /translation="MNKFIDRAEQFGPVGDYLLSVVERFPTVHSYGELSFVDALTRLRA FT MSNNLHANDALLPAAVSLLCLPFPLQVEMSRADVYALLVKGTSLPFNFVRSTAHLHPLP FT DDVGRPGSTRYSGRFFARLLNDHSFRRSCFPTKKMLPAEVKPNLALAPLIRSFSTCAGP FT TLAGHFLRHLAGHVTEDVAMAAMVYAHGLVACYGQKGYDIAAWLVLRPAAAKGISTAIK FT ALGANAHDFGAVLCEAQTLLGRAVSTIDLAHEAEYRCDPDLVAKQVIEPGEELRSHIRA FT VLAMELAGRDLSLPDLDSWWSSRWLWCVNGSQNDASSRLLGIDTARFREFHTREYRRMA FT SEALTHEPITSWDGYTNISASPKLEHGKTRAIFACDTRSYFAFEWLLGATQKAWRNHRV FT LLDPGGGGHLGISRRVRSFMKHGGVNLMLDFDDFNSHHSLNSQRMLFGELCDRANAPGW FT YRKVLSDSWGKMHVNIAGHMRPWLGTLPSGHRGTTIVNSVLNAAYIRMALGGPAFDKLT FT SLHTGDDVYIRADTLTSCEWILDRVRSVGCRINPAKQSVGFGTGEFLRMAITQRETRGY FT LARSVASFVSGNWTNQNPLDPADALRTAIVSTRALINRSGRQDYARLVGPALRLSHPLG FT TRNIIRLLSGDVALDDGPVYNTDGRIVHFRVEGQIEDALPVSERWPHNATDAYLLSHVS FT EVERAALAATGTDAAALMLASSFSKGHSSLGSARRQVVRVAKRETTRAHGFADASDLLH FT RDRDKVGVLKAYPLVNLVKNRLRKETISELLILAGHTPGADPYRQAFGEHPESKNIIGS FT LSHSDASALGKATRSGNIYTLTPVFV" XX SQ Sequence 5163 BP; 916 A; 1725 C; 1459 G; 1063 T; 0 other; ggatttcacg tacaacgtag ggttgtcctt acgcgttgcg cgcaaggtca gacaggacgg 60 gcttgtctgg tttcggttga tgccacctat ttccaccgcc cagtggtacc actcactctt 120 actgaaaagt ttgttcgtga accggtttag gcaatcgtca ttgttcgggg ggagggttcc 180 gttgatcccc aacacgacga ttgacggcta cattaccaca caccagcacc acacaacccc 240 gaactttccg atggagcacg cgctccgcaa cgcattcctc gccgcggtta tcgcctcgcc 300 gcggggagga acactcttga ccgcaccgac aaagaaaggg aaagagaaga aggcgccact 360 cgcgacttac cggcgctacc gtgcgaatat tcgtacggag tcaaccatcg ccggtaatgt 420 cgacgcgcgt gtggctggca tccaatacga gattggagct cgctacgaac gcgtagggga 480 ggctttcgct cccgtccccg aagagcaggt tctcttcgag gcggcttatc cgtcctccgc 540 ggccttggcc gaggacttcg tcggattcgc gcggaagtac tccaacttct ccgccacttt 600 cgcccactcc agcctcgctg ggttggtcga aagagtcgcg cgcacactgg gtgcgctaac 660 cgtcttcccg tccggtactt tcgaccagga cgcgattcgc ggggggcgcc cactgatgat 720 cgcggcgctt ggcactctgg acgggccggt caattcgttg gccggttccg tcttcatacc 780 ccgactcgtg gacagcgtca tttcgcctga cgttttcacc atcctgatca acgccgctgc 840 cggtgagggc agccgcgtca tcacggatgt cctcgagctg gatgccacga ccaggaggcc 900 tattgtcccg actcttcggg actcgagcat gctcctcccc tgtgtcgagg ccctccggat 960 cctcggggct aacatggcgg cctgtgacca ggggccgctc tttgcctttg cactggtccg 1020 cggtctcaac gccgtcttgt ctcttgtcgg acatactgac gaggctggcg tgacccgcga 1080 catcttccgg gtctccgggt tcgatatccc ctttggcggg attcatttcg gactggagcc 1140 ttacgccgga ctgccggcgg tcgcttcgaa cgcgggtgct gacgcctgct gctacgtgga 1200 cgcgctcctg atgacgtctg gagccctcgt agcccattgc gaccctggcc aggaatacgg 1260 gggacgttgg ttcccaactg tcctccaagg gactggtccc gacaccgctg aggtgcgccc 1320 gggacagtct caagagggta cggccgatat ggctaaccgt aaccgcgggc tgctcgcttc 1380 gagtatgccg cggttcgccg agcactacgc ccgtgggctc ggtcgcctct tcgctatcga 1440 gggtgatgcg cgcatcgtcg tgaacatcct cagcgcgtcg gcccgcctct tgcccgacaa 1500 ctgccgccac ttgcggtacc cctccgtctc gccctatttt tgggtcgagc ccacttctct 1560 gctgcccccc gacttcttag ggacggcggc agagctcaat gggtgtgggt cccttgcaat 1620 gcgtggcacc tcccgaaccc gccaggcttg ggaggacatc gaacgagtgg gtgacgaaga 1680 cgtcactttc acggggtaca acgtggcgat gcctttcgcc cggtcctcgt ggttcctcat 1740 ccactggctc aaccaccccg ccaacgggct cggcgctttg cgtgtgcgcc agctcgaccc 1800 gaacggggtc attcacccgg ggccttgcgc tgacaatcct gacgtccggg atcgcgttga 1860 ggcctccctg cccattacgg actatttgtg ggtccggggg caatctccct tccccgcgcc 1920 tggtgagttc ctgaacttga ccgggacgtt gggactcctc gcccgccacc tgaccatgga 1980 cgacgacggg attccgaccg aggaacacct ccccaccggg agggaatttc gcgacactgc 2040 ggtcacggtt gttgcggggc gtccggtggg cctccctaat ggggcccaca acgcctacga 2100 ctctcaagct cgtcgcgccc gaacccgcgc gacccgcgag cttgcggcct ccgctgcacg 2160 cgcccgtctt tacggccggg ccaccgtagc ggagatgccg atactgacca gcgcgcctgt 2220 tttgcgcgct gcgccaccac ggccagaagc cgtaaacccg atggagggtg gggggccagg 2280 acacgacctg gcgcgtcatt cagggatggg tagacacact tacccccctg accgcgaaca 2340 acgcggcgac cccgcagtgc cggtgccaca gcaccaggcc ctgcgcgccc ctcagatgcc 2400 acgccccggc ccgaacccgc agggcggcgg cgtgatcccg cccccccccc cgcttccgcc 2460 gtcaggtgga ggtgacggtt ctggccccag tagtggtggc tcctgtgctc aggaggacac 2520 caaccctgcc ccccctgtag cacccggccc cgcccagcct gacgggcccg ccaatgaata 2580 agttcattga cagggccgaa caattcggcc cggtgggtga ctacctacta tcggttgtcg 2640 aacgcttccc gacggtacat tcttacggtg aactctcttt cgttgatgcc cttacccggt 2700 tgcgtgctat gtccaataac ttgcacgcga acgacgcgct gctgcctgcc gctgtgtctc 2760 ttctctgcct gccgttccct ctgcaggtcg agatgtcacg cgccgacgtg tatgcactgc 2820 tcgtaaaggg cacgtccctt cctttcaact ttgtacgttc caccgcccac ttgcaccccc 2880 tgcctgatga cgttggccgg ccgggttcca ctcgttacag tgggcggttc tttgcgcgtt 2940 tgcttaatga ccactctttc cggcgttctt gttttccaac gaagaagatg ttgccagcag 3000 aggttaaacc caacctcgcc ctggcgcctc tcatccgctc gttttccacg tgtgccggac 3060 ccaccctggc cggtcatttc ctacgtcacc tagctggaca cgtgaccgag gacgtcgcga 3120 tggctgccat ggtatatgcc cacggcctcg tcgcctgcta cggacagaag ggctacgata 3180 tcgcagcctg gcttgtctta aggcctgcgg cggctaaggg catctcgacg gctatcaagg 3240 ctctcggcgc gaacgcccat gacttcggtg ctgtcctctg tgaagctcag actttactcg 3300 gacgcgccgt ctctacaatc gacctagccc acgaggcgga ataccgctgt gaccccgatc 3360 tcgtggccaa gcaggtcata gaacccggtg aagagttacg ctcccacata cgcgccgtcc 3420 tcgcgatgga gctcgctgga cgagacctct ctctgcccga cctcgactcg tggtggtctt 3480 ctcgctggtt gtggtgtgtg aacggttccc agaacgacgc ttcctcgcgc cttctcggga 3540 tcgacactgc ccgtttccgc gagttccaca cgcgtgagta ccggaggatg gcttccgaag 3600 cgttaactca cgaaccaatc acgagctggg acgggtacac gaatatctcg gcttccccca 3660 aattggaaca cgggaaaacc cgagctatct tcgcttgcga cacccgcagc tacttcgctt 3720 tcgagtggtt gcttggcgct acacaaaaag cctggcgtaa ccaccgagtt ctgctcgacc 3780 ctggtggtgg cgggcatctt ggcatatctc gacgtgtccg tagtttcatg aaacacggcg 3840 gggtgaacct gatgctcgac ttcgacgact tcaactccca ccactctctc aacagccaac 3900 gcatgctctt cggtgagctt tgtgaccgtg cgaacgcccc cggatggtac cgaaaggtgc 3960 tttccgattc ctgggggaaa atgcacgtaa acatcgccgg tcacatgcgt ccatggcttg 4020 gtacgcttcc ctctggccac cgggggacga ccatcgttaa ctcagtgcta aacgcggctt 4080 acatccgcat ggcactaggt ggccccgcct tcgacaaact cacctccctc cataccggcg 4140 acgacgtcta catcagggct gacaccctga cctcgtgtga gtggatcctt gaccgtgtcc 4200 gctccgtcgg ttgtcgcatt aaccccgcca agcagagcgt gggttttggg actggtgagt 4260 tcctccggat ggcgattacc cagcgagaaa cgagagggta cctcgctcgg tcggtggcct 4320 catttgtctc aggcaactgg accaaccaaa accctctcga ccccgccgac gccttacgaa 4380 ctgcgatcgt ctctacgcgt gctctgatca atcgatcagg gcggcaagac tacgcacgac 4440 tcgtgggccc ggcattacgc ctatcccacc ccctcggcac gcgcaacatc atccggttac 4500 tcagcggtga tgtggcactc gacgacggcc ccgtctacaa cacagacggc cgcatcgtgc 4560 atttccgggt ggaagggcaa attgaggacg cgctccctgt ctccgaacgc tggcctcaca 4620 acgccaccga cgcgtacttg ttatcgcacg tgtcggaggt ggaacgcgcc gccctcgcgg 4680 cgaccggcac tgacgctgcc gccttgatgc ttgcctctag cttttcaaaa gggcattcat 4740 cattaggcag tgctcggcgc caggttgtca gggtagcaaa gcgggaaacc acccgcgccc 4800 atggtttcgc agatgcttct gatctactgc accgtgaccg tgacaaagtc ggggtattga 4860 aggcataccc cctcgtcaac ttggtaaaga accgccttcg taaggagaca atatcagaac 4920 tgctcatcct cgccggccat acgcctggcg ccgacccgta ccgacaagcc tttggtgaac 4980 acccagagtc aaagaacatc atcggctcgt tatcgcactc ggacgccagc gcgttgggca 5040 aggcgacgcg ttctggtaac atatacaccc tcacccccgt gttcgtttag tcagagacga 5100 gcattggccg ccccaaccag accggggcaa catactagtg ggcccgctgg ggccaaactg 5160 cag 5163 //