ID AF014881; SV 1; circular; genomic DNA; STD; VRL; 2755 BP. XX AC AF014881; XX DT 06-JAN-1999 (Rel. 58, Created) DT 08-MAY-2018 (Rel. 136, Last updated, Version 6) XX DE Cotton leaf curl Gezira virus, complete genome. XX KW . XX OS Cotton leaf curl Gezira virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2755 RX DOI; .1023/A:1011967232319. RX AGRICOLA; IND23263265. RA Bigarre L., Chazly M., Salah M., Ibrahim M., Padidam M., Nicole M., RA Peterschmitt M., Fauquet C., Thouvenel J.C.; RT "Characterization of a new begomovirus from Egypt infecting hollyhock RT (Althea rosea)"; RL Eur. J. Plant Pathol. 107(7):701-711(2001). XX RN [2] RP 1-2755 RA Bigarre L., Chazly M., Salah M., Padidam M., Nicole M., Peterschmitt M., RA Fauquet C., Thouvenel J.C.; RT ; RL Submitted (19-JUL-1997) to the INSDC. RL Ca Phyma, Cirad, 2477, Val Montferrand, Montpellier 34032, France XX DR MD5; ea4b42da8b40d6bf50b4cb02f91ca6a0. DR EuropePMC; PMC2839976; 20178575. XX FH Key Location/Qualifiers FH FT source 1..2755 FT /organism="Cotton leaf curl Gezira virus" FT /mol_type="genomic DNA" FT /note="from Egypt" FT /db_xref="taxon:222459" FT misc_feature join(2610..2755,1..138) FT /note="large intergenic region" FT CDS 139..507 FT /codon_start=1 FT /product="pre-coat protein" FT /note="putative replication regulator; ORF AV2" FT /db_xref="GOA:Q9YYU1" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:Q9YYU1" FT /protein_id="AAD01547.1" FT /translation="MWDPLVNDFPATVHGFRCMLAIKYIQAVRSEYDPGSLGFDLLSDL FT IGVLRAGNYVEATGRYHNFHSRLEGTTSSELRQPNAVRCSCPHCPRHKQTPSVVQQTQL FT QEAQNVQNVSEPRCPKGV" FT CDS 299..1075 FT /codon_start=1 FT /product="coat protein" FT /note="ORF AV1" FT /db_xref="GOA:Q9YYU0" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:Q9YYU0" FT /protein_id="AAD01546.1" FT /translation="MSKRPADIIISTPASKVRRRLNFDSPMQSGVRAPTVLVTNKRRAW FT SNRPNYRKPRMYRMYRNPDVPKGCEGPCKVQSYEQRDDVKHTGIVRCVSDVTKGTGLTH FT RTGKRFTVKSIYILGKIWMDENIKKQNHTNNVMFFLVRDRRPYGNSPMDFGQVFNMFDN FT EPSTATIKNDYRDRFQVMRKFSATVTGGPSGMKEQALVRRFFKINSHTVYNHQEAAKYE FT NHTENALLLYMACTHASNPVYATLKIRIYFYDSVSN" FT CDS complement(1072..1473) FT /codon_start=1 FT /product="unknown" FT /note="ORF AC3" FT /db_xref="GOA:Q9YYT9" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:Q9YYT9" FT /protein_id="AAD01545.1" FT /translation="MDSRTGEIITAHQAENGVLIWTINNPLFFKTQQEIWTSSSKGKVI FT DIQIRFNHNLRKALGIHKCFLNFRIWTISRPPNGLFLTAFRKQVYKYLNTLGVISLNNV FT IRAVNHVLWNVLKTTIEVHSSTYIKFNIY" FT CDS complement(1217..1621) FT /codon_start=1 FT /product="putative transcriptional regulator" FT /note="ORF AC2" FT /db_xref="GOA:Q9YYT8" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:Q9YYT8" FT /protein_id="AAD01544.1" FT /translation="MRPSSPSQISCTQVPIKVKHREAKKRAIRRRRIDIPCGCTVYVAF FT TCRDNGFTHRGNHHCASSREWRSYLDNQQSPFFQNPTRNLDEFFERESHRHPDPVQSQP FT QEGIGDSQMFSQLPNLDDFTPSEWSFLNRI" FT CDS complement(1521..2609) FT /codon_start=1 FT /product="replicase" FT /note="ORF AC1" FT /db_xref="GOA:Q9YYT7" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:Q9YYT7" FT /protein_id="AAD01542.1" FT /translation="MAPPKRFKIYAKNYFLTYPHCSLSLSETLSQLKTLQTPVNKLYIK FT ICRELHENGEPHLHALIQFEGKYQCTNKRFFDLVSPSRSTHFHPNIQGAKSSSDVKSYL FT EKDGDTLEWGEFQIDARSARGGQQTANDAYAAALNAGSKSEALRVIRELAPKDFVLQFH FT NLTSNLDRIFQEPPAPYVSPFLSSSFDQLPEELEEWAAENVVEAAARPSRPISIVIEGE FT SRTGKTVWARSLGPHNYLCGHLDLSPKVFSNDAWYNVIDDVDPHYLKHFKEFMGAQKDW FT QSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEYLDEEKNAHLKSWALKNATFITLSNQL FT YSGTNQSQASGGQEESNQETQD" FT CDS complement(2159..2452) FT /codon_start=1 FT /product="unknown" FT /note="ORF AC4" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:Q9YYT6" FT /protein_id="AAD01543.1" FT /translation="MGNLICMPLFNSRESTSARIKDSSTWYPQADQHISIRTFRELNQA FT PTSSPIWRRTETPSNGESFRSMQDLQEGDNRPPMTLTPQRLTQEVSQRLLGL" XX SQ Sequence 2755 BP; 722 A; 551 C; 634 G; 848 T; 0 other; accggtgggc gcgaaaaaaa aaagtggtcc ccgccacgtg aacatgtcgc gcgatgctgt 60 ccaatcaaaa cgcgcgctgt acttattata atttgaaatt tgaaataaaa acttggtccc 120 taagtagttg aaattaaaat gtgggatcct ttggtgaatg atttcccggc aaccgtgcac 180 ggttttcggt gtatgttagc tataaaatat attcaggcgg ttaggtccga atacgatccc 240 ggtagtttag ggtttgattt attgtctgat ttaataggtg ttcttcgtgc cgggaattat 300 gtcgaagcga ccggcagata tcataatttc cactcccgcc tcgaaggtac gacgtcgtct 360 gaacttcgac agcccaatgc agtccggtgt tcgtgccccc actgtcctcg tcacaaacaa 420 acgccgagcg tggtccaaca gacccaatta caggaagccc agaatgtaca gaatgtatcg 480 gaacccagat gtcccaaagg ggtgtgaagg tccatgtaag gtccagtcct atgaacagcg 540 tgatgatgtg aagcatactg gtattgttcg ttgtgtttca gatgtgacca agggaactgg 600 gcttacgcat cgtactggta aacggtttac tgtgaagtcc atttacatat tggggaaaat 660 atggatggat gaaaatatca agaagcagaa tcatactaac aatgttatgt ttttcttggt 720 ccgagataga aggccctatg gtaatagtcc tatggatttt ggacaggttt ttaatatgtt 780 tgataatgag cccagtactg ctactataaa gaatgattat cgagatcgtt tccaggtgat 840 gcgtaagttt agtgcaacgg taactggtgg tccttctggg atgaaggaac aggctcttgt 900 tcgtaggttt tttaagatta atagtcatac agtttataat caccaggaag ctgcgaagta 960 tgagaaccat actgagaatg ctttgttgtt gtatatggca tgtactcatg cttctaatcc 1020 tgtgtatgct acgttgaaaa tacgtatcta tttctatgac tctgtatcga attaataaat 1080 attgaatttt atatatgtac ttgaatggac ttcaattgtc gtttttaata cattccataa 1140 tacatgatta actgctctaa tgacattatt aagagaaatt acaccaaggg tattcaaata 1200 tttgtacact tgtttcctaa atgcggttaa gaaaagacca ttcggagggc gtgaaatcgt 1260 ccagattcgg aagttgagaa aacatttgtg aatccccaat gccttcctga ggttgtgatt 1320 gaaccggatc tggatgtcta tgactttccc tttcgaagaa ctcgtccaga tttcttgttg 1380 ggttttgaaa aaaaggggat tgttgattgt ccagataaga acgccattct ctgcttgatg 1440 cgcagtgatg atttcccctg tgcgtgaatc cattgtctct gcacgtgaag gctacgtata 1500 ccgtgcaacc acaagggatg tcaatcctgc gtctcctgat tgctctcttc ttggcctccc 1560 gatgcttgac tttgattggt acctgagtac agctgatttg agagggtgat gaaggtcgca 1620 ttctttaatg cccaggattt gagatgcgcg ttcttttcct cgtctaaata ctctttatag 1680 gaggaattgg gacctggatt gcagaggaag attgttggga tgcccccttt aatttgaact 1740 ggcttcccgt attttgtgtt gctttgccag tccttttgtg cccccatgaa ctccttaaag 1800 tgtttcagat aatgcgggtc aacatcatct atgacgttat accatgcgtc attactgaac 1860 acctttgggc tcagatcaag atgaccgcac agataattgt gaggcccaag acttctggcc 1920 catacggtct ttcctgttct gctttcccct tcaatcacta tactaatcgg tctacttggc 1980 cgcgcagcgg cctcaacgac gttctccgcc gcccattctt caagttcttc tggaagttgg 2040 tcgaacgaag aagacaaaaa aggagaaaca taaggagctg gaggctcctg aaaaatccta 2100 tctaaattac tagttaaatt atgaaattgt aaaacaaaat ctttgggagc taactccctt 2160 ataaccctaa gagcctctga cttacttcct gcgttaagcg ctgcggcgta agcgtcattg 2220 gcggtctgtt gtccccctct tgcagatctt gcatcgatct gaaactctcc ccattcgagg 2280 gtgtctccgt ccttctccag ataggacttg acgtcggagc ttgatttagc tccctgaatg 2340 ttcggatgga aatgtgttga tctgcttggg gataccaggt cgaagaatct tttattcgtg 2400 cactggtact ttccctcgaa ttgaataagg gcatgcagat gaggttcccc attctcgtga 2460 agctctctgc aaattttgat gtatagtttg ttaactggtg tttgtagggt tttcaattgg 2520 gaaagggttt ctgataggga aagagaacag tggggataag tgagaaaata atttttggca 2580 tatattttaa aacgttttgg gggagccatt tggtcaatgt acaccgattg acttggattt 2640 catttggtgc ctgctatcgg tgtaatggtg tacaatatat agttgtacac caaatggcat 2700 tttggtaaaa atcccaataa ttttgaatcc ccatagcgcc caccgttcta atatt 2755 //