ID AB710145; SV 1; linear; genomic RNA; STD; VRL; 8224 BP. XX AC AB710145; XX DT 17-AUG-2012 (Rel. 113, Created) DT 30-NOV-2012 (Rel. 115, Last updated, Version 2) XX DE Chinese yam necrotic mosaic virus genomic RNA, complete genome, isolate: DE PES3. XX KW . XX OS Chinese yam necrotic mosaic virus OC Viruses; Riboviria; Potyviridae; Macluravirus. XX RN [1] RP 1-8224 RA Kondo T.; RT ; RL Submitted (02-APR-2012) to the INSDC. RL Contact:Toru Kondo Aomori Prefectural Industrial Technology Research RL Center, Agriculture Research Institute; 82-9 Tanaka, Kuroishi, Aomori RL 036-0522, Japan XX RN [2] RC DOI:10.1007/s00705-012-1429-1 RX PUBMED; 22886278. RA Kondo T., Fujita T.; RT "Complete nucleotide sequence and construction of an infectious clone of RT Chinese yam necrotic mosaic virus suggest that macluraviruses have the RT smallest genome among members of the family Potyviridae"; RL Arch. Virol. 157(12):2299-2307(2012). XX DR MD5; a176d525cbf7a9dea9e2a7b9bd4afec0. DR EuropePMC; PMC4974321; 27492000. XX FH Key Location/Qualifiers FH FT source 1..8224 FT /organism="Chinese yam necrotic mosaic virus" FT /host="Dioscorea opposita" FT /isolate="PES3" FT /mol_type="genomic RNA" FT /country="Japan:Aomori" FT /collection_date="08-Nov-1997" FT /db_xref="taxon:128818" FT 5'UTR 1..130 FT CDS 131..7993 FT /codon_start=1 FT /transl_table=1 FT /product="polyprotein" FT /db_xref="GOA:J7MAS6" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR001456" FT /db_xref="InterPro:IPR001592" FT /db_xref="InterPro:IPR001650" FT /db_xref="InterPro:IPR001730" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR013648" FT /db_xref="InterPro:IPR014001" FT /db_xref="InterPro:IPR027417" FT /db_xref="InterPro:IPR031159" FT /db_xref="InterPro:IPR042308" FT /db_xref="UniProtKB/TrEMBL:J7MAS6" FT /protein_id="BAM36463.1" FT /translation="MATVKSDINFKVENVDILSTHSMQMLTGKPLTIPDRTRALLVEIV FT GKRYQNNDGNTSADFVMLDGKGAMIANMCMAITKGMKFKDYKDGMVNMPQQTSFAECDK FT VVKCVKVQQQHLLHARLPTNDYVFGGMSKSNAIPMIKNMVPKSGSCFLSAIVAMSYFVT FT PEFDEIFMQTINDVLGELGSWPTLQNVSKAMQFILAKVPTLSMVPLPVIAVTHEKKLIH FT ICDQRGVPNGWHILKIGTVAELANAGFIKHTKLNGYFVGAPESITDDKMFYTRNINKVK FT NLMTLWRSPERFVEAMANDIELTAFILLSPSLLSKLYNLLSIGSSEALKIEALERANSN FT KIVVASLINIALQGVRVKMGETSLEKVWLHLLNVLTANLSIEESRRNTDILQACNAVYN FT ELIKEKNYMYHCEKQIYNLTDKQFEDMFGCSRTWHSKLCDKLSHLNVAKSVQQSSVKLS FT CFSDGITHRTIQAVTHHFIMCFIRLLIFAQHAYSILRFFFLLAACCWGFMSITNLVFMA FT FKAVVMRKLATNYEKLLIFASIFCLYEVGRFIIKKRKANKDKAAGRTTELQAYGKSSEK FT QMMAAMAMVTLFVHAFDMDLALMMSNSLNHVARLANMLTDTTTGWLTSGGGTQELQMKL FT FDVALEVDETMTHEMDQQAAMDCSNETFAAWINEQVLLGNDNTRPLAYGRDDSVFYVTR FT DNAIDVGQDMCDTKNAWSQVIGQTGSGKSTRVPLSYYNKIQTLPGRNRSILICEPTKAT FT TQNVAAALSTQHGKQVFFKHEGKEQAGDPTIQVMTYGSAFYRSCNNPAFLSNFDAVFLD FT ESHLVSAHALALESLLNKNNRVRKFYLSATPRKQFPEMTGSRRFEIFEHQVESGDVNDL FT ISAIGKGTIMDATKFGEKVLVFLSGKKECDRAATKVNSTNSGVKAISLHRDNFSANYNR FT LCHDLTQPGKIYIFATNILETGVTLNVDVVVDFGFTNTPVLNTSDKTLLLNKRRVTQAE FT RKQRIGRAGRLREGHAIVIGKTSTPFETVSADVVFEAALLSFIHNLDVYVNAHFDQAWL FT SSITRDQAKTMMAFKISPFIMKDLVFANGHIRSEMLEFLKPHLHHSANIKTTNYQCVNH FT IYESWPRLDHHSLIDSMQNNEEKTKKIHKMRTPFITHDLNQLDLEMFANCVEKYRPNVL FT TRWGRPVEQTTNVLMHVNQENIHATIRIANLLRYDYQQQIQQKKQAQQLHKDSPFAYFF FT SSKVVDELASNIGKQVAMAQRNVSKLDKFISRLEMFATMNEMAGDVEVTQQEMHEIGQC FT LDLQAEGTFSKDNMNVILSLETLPQTTFRDAIIIGRKKAIWGIMILCCAAFGGLAWWLL FT WDDDEGLNNDENKDRRNEVCSKVLEMKGKSFNRDRRNPMMQDHFDAADFYMRDVEDFAS FT LRSRRKVSRVDDAVSPVLRYAAKSRPFITLYDINVDSEVATAVFQDHNGQAFYETANPL FT KNMDLVREHLNKHKAKDGTQIFWSDESDFDIFCKITKTDGTIMKVKLTPHEPLRMARRG FT TQGFVEKEDCYRQTGQAEILQHPGVNLEMATRLPENKLNLQVADMIGKVSMSEGTIHCI FT LYKDFILMPAHAMIKQLPMEISFKHFTITIDTLPEAYCFPGFDIVLIKRPAKLAPVRCH FT ATLAQATDGMIVQMVHKKSVSDKTVLTITAPIHQRDDWRWAHQIPTVSGMCGAPVIDVA FT SGKIVGIHVLADSLKMHNVFETFPSQLLEIINTNDKKVHQRYHQARVNDWTFLPEAHGY FT FPSELVGLQMESFEFIEFSRDTTMYTVDNFNRDATAGGLLKSRVVEESKTLPVGVSATH FT MSNVAYMNGLLNPRHTITGESPFWREFKRCHPKQTKGIEEFENAYAPSVLSYDAYWKDL FT LKFNRAEFKADKIDKDILKCATLALVKQLKDSGMQQTKIRTVEEVLDDVQWGKAAGPMY FT AMKKLELCKDLSEEDLTALAIHCRTQLLKGKNCGIWNGSMKAELRVVEKVLQKKTRVFT FT AAPITTLIGSKFFVDDFNKQFYGTHLKASHTVGINKFQRGWEKLYNFLNVDGWLHGSGD FT GTRFDSSLDPFWFDILYSIRSNFFCEEDRQDAKTAMAHMYREFVYTPIHTITGQVLVKK FT LGNNSGQPSTVVDNTLILMLSFLYAYIRKTNDRTCAQINQRFKFVCNGDDNKYSVSPEF FT HEEFSGDFSREIAELGLTYEFDDLTADITQNPYMSLVMVRTPGGIGFQLNPERIIAIVQ FT WIKRGDVLQASQAAFAAMIEAFNDPWLFGVLHLYFVWLLCQYREEIRYAMDHDLGAVCY FT MDAYQVYALHYDTRDDINDLQIDSASCEIEKTVVVAGSTQHISLQMDLSTPVQLPTKKP FT SVEDKGKALATPSTTATLPDSSQGHQPVEEPNNNPDTVDEEDIEWRIPAIQKGFGHYKI FT PKVKGKRIWNPKILKKIAHEQFTTTSQMVTTDKLEKWTEEVKRDLVVTNETDFQICLTS FT WCLWCANNGTSSELDASQFMEVHANGQIMGIPIQIFVEPAIQHGGLRKVMRHFSGITSK FT MLSEGGKMTAWGRKRGFTQRSMIPYAFDFFVPTDTTPKTIREQLSQSKAAAIGRGVQRV FT MLLDGKVHGSRTSYERHTDNDQDEYEHGGAEDQRPALY" FT mat_peptide 131..913 FT /gene="HC-Pro" FT /product="HC-Pro protein" FT mat_peptide 914..1834 FT /gene="P3" FT /product="P3 protein" FT mat_peptide 1835..2026 FT /gene="7K" FT /product="7K protein" FT mat_peptide 2027..3994 FT /gene="CI" FT /product="CI protein" FT mat_peptide 3995..4234 FT /gene="9K" FT /product="9K protein" FT mat_peptide 4235..4774 FT /gene="VPg" FT /product="VPg protein" FT mat_peptide 4775..5425 FT /gene="NIa-Pro" FT /product="NIa-Pro protein" FT mat_peptide 5426..7126 FT /gene="NIb" FT /product="NIb protein" FT mat_peptide 7127..7990 FT /gene="CP" FT /product="CP protein" FT 3'UTR 7994..8224 XX SQ Sequence 8224 BP; 2606 A; 1630 C; 1844 G; 2144 T; 0 other; aaaattttaa aattgaacac aactaaatcg aatcgaacgc aaagcaatca aaacgaacgc 60 tctgaactaa ggtgattttg aaatcctaaa ttttacaatt ggaaaaacac attcttcaca 120 actggaactc atggcaactg ttaagtcaga cattaacttt aaggtcgaga atgttgacat 180 tctgagcaca catagcatgc aaatgctcac tgggaaacca ctcacaattc cagatcgaac 240 ccgtgctcta ctggttgaaa tcgttggaaa acgatatcaa aataatgatg gaaacacaag 300 cgctgatttc gtcatgctgg atggaaaagg agccatgatc gccaatatgt gcatggcaat 360 aactaaagga atgaaattca aagattacaa agatggcatg gttaacatgc cacaacaaac 420 atctttcgcc gagtgcgata aagttgttaa gtgtgtgaaa gttcaacagc aacacctttt 480 acacgcacgc ttgccaacaa atgactacgt gtttggtgga atgtcaaagt caaatgccat 540 tccaatgatt aaaaacatgg tgcccaagtc tgggtcatgc tttctgagtg ccatcgtggc 600 gatgagctac ttcgtgacac cagaatttga tgagatattt atgcaaacaa ttaacgatgt 660 tttgggtgag cttgggtcat ggccaacctt gcaaaatgtt agtaaagcca tgcagttcat 720 actggcaaag gtgccgacgc tgagcatggt gccacttcca gttatagctg tgacacatga 780 gaagaagctt atacacatct gtgatcagag aggagttccc aatggatggc acattcttaa 840 aattgggaca gtagcggaac tcgccaacgc aggtttcatc aaacatacaa agctcaatgg 900 ttatttcgtt ggcgcacctg aaagcatcac agacgacaaa atgttctaca ccaggaacat 960 caacaaagtc aaaaatctca tgacattgtg gcgatcacca gagagatttg ttgaggcaat 1020 ggctaatgat attgaattaa ctgcattcat actgttatcg ccgtccctcc tgtctaaatt 1080 gtacaatttg ttatcaattg gttcttctga agcattgaag attgaagcac ttgaacgtgc 1140 taacagcaac aagattgttg ttgcatcatt gataaacata gcacttcaag gtgtgcgagt 1200 taaaatggga gagacatcac ttgagaaggt gtggctgcat ttgcttaacg tcttaacagc 1260 aaacttgagc atagaggaga gccgccgtaa cactgacatc ctgcaagcgt gcaatgcagt 1320 ttataacgag ctcatcaagg aaaaaaacta catgtatcac tgcgaaaaac aaatttacaa 1380 cctcacagac aaacaattcg aggacatgtt tggctgctcc cgtacgtggc attccaagct 1440 ttgcgacaag ttatcacatt taaatgtcgc aaaatcagtg cagcaatcaa gcgtgaaatt 1500 aagctgcttt agtgatggaa taacacatag aacgattcaa gcggtcactc atcacttcat 1560 catgtgtttc atacgtctgc tgatctttgc gcagcatgct tactctatac taagattttt 1620 ctttcttttg gctgcttgct gctggggttt catgtcaata acaaatcttg tcttcatggc 1680 attcaaagct gtggtaatgc gaaaacttgc aactaattat gagaagttat tgatttttgc 1740 aagcattttc tgcttatatg aagtaggacg ttttataata aagaaaagga aggcaaataa 1800 ggacaaagca gcaggtcgca caactgaact tcaagcatat ggtaagagca gcgaaaaaca 1860 aatgatggct gcaatggcga tggtaacgct ttttgtgcac gcttttgaca tggacttagc 1920 tctgatgatg agcaattctt taaaccatgt cgcaagattg gctaatatgc tcacagacac 1980 aacaactggt tggttgacga gtggtggtgg cacacaggag ttgcagatga aactgtttga 2040 tgtggcgctc gaagttgatg aaacaatgac acacgaaatg gatcagcaag ctgctatgga 2100 ttgctccaat gaaacatttg ctgcttggat aaatgaacaa gtgttgcttg gtaacgataa 2160 cacccgaccc ctagcgtatg gcagagacga ctcagttttc tacgtgacac gtgataacgc 2220 cattgatgtg ggtcaggaca tgtgcgacac gaagaatgct tggtcacaag ttattggtca 2280 aacaggctct ggcaagtcaa ctcgagttcc attatcgtac tacaacaaaa tccaaacgct 2340 tcctggaagg aatcgaagta ttctgatttg tgaaccaaca aaggcaacaa cacaaaatgt 2400 tgcagcagca ttatcaacgc agcatggtaa acaagttttc ttcaagcatg agggaaaaga 2460 gcaagcaggc gacccaacta ttcaagttat gacgtacggc tcagcatttt accgatcttg 2520 caataatcct gcttttctaa gcaacttcga cgcggttttc cttgacgaat cacatctcgt 2580 ctcagcgcat gccctggctt tggaaagttt gctgaacaaa aacaataggg ttaggaagtt 2640 ctatctctct gcaacaccac gtaaacaatt tcctgagatg actggatcac gacgctttga 2700 gatttttgag catcaagttg aatcaggcga tgtcaacgac ttgatttcgg caatcggaaa 2760 aggaacaatc atggatgcga caaagttcgg agagaaagtt ctcgtgtttt tatcaggaaa 2820 gaaagaatgt gatcgagcag caacaaaagt gaactcaact aattctggtg tcaaggcgat 2880 atctctacat cgtgacaatt tcagtgcgaa ttacaatcga ttgtgtcatg atctaacaca 2940 acctgggaaa atttacattt ttgcaaccaa cattctagaa acaggtgtaa cgctaaatgt 3000 tgatgttgtc gttgatttcg gattcacgaa cacacctgtg ctaaacacct cagacaaaac 3060 gctgttgctc aacaaaaggc gggtaacaca agctgaaaga aagcaacgaa tcggaagagc 3120 tgggcgacta cgagaaggac atgcaattgt cattgggaaa acatcaacgc cctttgagac 3180 agtctcagct gacgttgtgt ttgaggcagc tcttttatca ttcatacaca acctcgatgt 3240 gtatgtcaat gcacattttg atcaagcttg gttgagttct ataactagag atcaggcaaa 3300 aacgatgatg gcttttaaaa tttcaccttt catcatgaag gatcttgttt tcgccaatgg 3360 tcatatccgt agtgagatgt tggagttttt gaagccacac ttgcaccaca gtgcaaatat 3420 caaaaccaca aattatcagt gtgtgaatca catctatgaa agttggccaa gactcgatca 3480 tcactcactg attgacagca tgcaaaacaa tgaagagaag acgaagaaaa tacacaagat 3540 gcgcactcct ttcatcactc acgatctgaa tcaactggat cttgagatgt ttgcgaattg 3600 tgttgaaaaa tacagaccaa atgttttgac tagatggggt cgacctgttg agcaaacaac 3660 gaatgttctc atgcatgtta atcaagaaaa tatccatgcc acaatccgca ttgccaactt 3720 gctgcgatat gattatcaac aacaaattca gcaaaagaag caggctcaac aattgcacaa 3780 ggattcgcct ttcgcatact ttttctcgtc gaaggttgtt gatgagttag cttcgaacat 3840 cggaaaacaa gtcgcaatgg cacaaaggaa tgtgagcaag cttgataaat ttatttctcg 3900 gttggaaatg tttgcaacga tgaatgaaat ggctggtgat gttgaagtaa cacaacaaga 3960 gatgcatgag ataggacagt gcttagactt acaggctgag ggaacttttt caaaggacaa 4020 catgaatgtc atccttagcc ttgaaacttt accacaaaca acctttcgag atgccataat 4080 cattggtcga aagaaagcca tctggggtat aatgattttg tgctgcgcgg catttggagg 4140 tttagcctgg tggttgttgt gggatgatga tgaaggacta aacaacgatg agaataaaga 4200 tagacgaaat gaggtttgtt cgaaagttct cgagatgaaa gggaagagct tcaatcgcga 4260 ccggcgcaac cccatgatgc aagaccattt tgatgccgcc gacttctaca tgcgtgatgt 4320 tgaagatttc gccagcttac gctcaaggag gaaagtttcc agagttgatg atgctgtctc 4380 gcctgtttta aggtatgctg ctaagagccg acccttcata accctgtacg atatcaatgt 4440 tgatagtgaa gtcgcaacag ctgtttttca agatcacaac ggacaagctt tctatgagac 4500 agcaaaccca ctcaaaaaca tggatttggt tagggagcac ttaaacaaac acaaggctaa 4560 agatggcaca caaatcttct ggtctgatga gtcagatttt gacatctttt gcaagataac 4620 aaaaactgat gggacaatta tgaaagtaaa gttaacccca catgaaccac ttcgcatggc 4680 aagaagggga acacaaggtt ttgttgaaaa agaggactgt tatcgccaaa ctggtcaagc 4740 tgaaattctt caacatccag gggtcaatct tgagatggca accagactgc ctgagaataa 4800 actgaatctt caagttgctg acatgattgg taaggtttcg atgagtgaag gaacaattca 4860 ctgtatcttg tacaaagatt ttatcctgat gccagcacac gcaatgatca aacaactgcc 4920 catggaaata agtttcaaac acttcactat cacaattgac acgttacctg aggcgtattg 4980 ttttcctgga tttgacatcg tgcttatcaa gcggccagca aaactagcac cagttagatg 5040 ccacgcaact ttagcgcaag ccactgatgg tatgatcgtg cagatggtgc acaaaaagag 5100 cgtgtctgat aaaacagttt taacgattac agcaccaata caccaaagag acgattggag 5160 gtgggctcat caaattccaa ccgtttctgg aatgtgtggt gctccagtaa ttgacgttgc 5220 aagtgggaaa attgttggga ttcatgtttt ggctgactca cttaagatgc acaacgtttt 5280 cgaaactttt ccatctcaac tgcttgaaat cataaacaca aacgataaaa aggtacatca 5340 gcgttaccac caagcaaggg tgaatgattg gacgtttttg cctgaggcgc acgggtactt 5400 cccgtcagag ctcgttggac ttcaaatgga atcattcgaa tttattgagt tttctcgaga 5460 tacaacgatg tacacagttg ataatttcaa cagagatgcc acggctggtg gtttgctcaa 5520 gtcacgagtt gttgaagagt caaaaaccct accagttggt gtttcggcca cacacatgtc 5580 aaacgttgca tatatgaacg gtttgctgaa cccaaggcac acaattacag gagagagccc 5640 tttctggaga gagttcaaac gttgtcatcc aaaacagact aaaggaattg aggaatttga 5700 aaatgcgtat gcgccaagtg tgttgagtta tgatgcgtat tggaaagatc tcctcaaatt 5760 caaccgtgcg gaatttaaag ctgacaaaat cgacaaagac atccttaagt gtgcgacact 5820 cgctttggta aaacaactga aggattctgg catgcaacaa acaaagattc gcacagttga 5880 agaagtgctt gatgatgtgc aatggggaaa agcggctggg ccaatgtatg caatgaagaa 5940 gcttgagctg tgtaaggatc ttagtgagga ggatttaaca gctcttgcta ttcattgccg 6000 tactcagctg ctcaaaggga agaattgtgg aatatggaat ggctcgatga aagctgagct 6060 cagagttgtc gagaaagtgc tacagaagaa aacgagggta ttcacagcag caccaatcac 6120 aacactcatc ggatcgaagt tctttgttga tgattttaac aagcaatttt atggaacgca 6180 tctcaaagca tcccacactg tcggtattaa taaatttcaa agaggttggg agaaattgta 6240 caacttctta aatgtcgacg gttggttgca tggaagtgga gatggaacgc gattcgactc 6300 atccttggat cctttttggt ttgacatttt atacagcata cgttccaatt tcttttgcga 6360 agaggataga caggatgcaa aaactgccat ggcacacatg tatcgcgagt ttgtttacac 6420 acccatccac accataacgg ggcaggttct tgtcaagaag cttggaaata acagtggaca 6480 gccaagcact gttgttgata acacgcttat cctgatgctg tcatttctat acgcatacat 6540 acggaaaaca aatgatagaa catgtgctca aattaaccag cgtttcaaat ttgtgtgtaa 6600 tggtgatgac aacaagtact cagtttcacc tgaattccac gaagaattca gcggagattt 6660 ttcaagggag atcgctgaac taggtttgac atacgaattc gatgacttga cagctgacat 6720 aacgcaaaac ccgtacatga gtctagtgat ggtacgaacg cctggtggca ttggtttcca 6780 actcaatcct gagagaatta ttgctattgt tcagtggatt aaacggggtg atgttctcca 6840 agcatcgcaa gcagcatttg cagctatgat cgaagcattc aatgatccgt ggttattcgg 6900 agttttgcac ttgtattttg tgtggctact ttgccaatac agggaagaaa ttaggtacgc 6960 tatggatcat gaccttggag ctgtttgtta catggatgcc taccaagttt atgctttgca 7020 ttacgacacg agggatgaca ttaatgattt gcaaattgat tcagccagtt gcgagattga 7080 gaaaactgtg gttgttgctg gctcaacaca gcacatcagt cttcaaatgg acctgagcac 7140 tccagtgcaa ttgccaacaa agaaaccatc tgtggaagac aaaggaaaag ctcttgccac 7200 accttcaaca acagctacat tgccagattc aagccagggg caccaaccag ttgaagaacc 7260 aaacaataac ccagacacag tggatgaaga ggacattgaa tggcgaatcc cagcaataca 7320 aaaaggtttt ggccactaca aaatcccaaa ggtcaaagga aagagaatat ggaacccaaa 7380 gattttgaag aaaatcgcac atgagcaatt cacgacgaca tcgcagatgg tgacaacaga 7440 taaattggag aaatggactg aggaggtcaa aagagatctt gtggtgacaa atgaaacaga 7500 tttccagata tgcttaacat cgtggtgtct ctggtgtgct aacaatggta catcatctga 7560 gttagacgca tcacaattta tggaagttca tgcaaacgga cagataatgg ggattccaat 7620 tcaaattttt gttgaacccg caattcagca cggaggacta cgtaaagtga tgagacattt 7680 cagtggaatc acgagcaaaa tgttgtctga agggggaaaa atgacagcgt ggggcagaaa 7740 aaggggtttc acccaaagat caatgatacc atatgccttt gatttcttcg tcccaactga 7800 tacgacgcca aaaacaatca gggagcagct gagtcaaagc aaggccgcag ctattgggcg 7860 tggtgttcaa agggtgatgc ttcttgatgg gaaagttcac gggagccgca caagttacga 7920 gagacacacg gataatgacc aggacgagta tgaacatgga ggggcggaag atcagcgccc 7980 agctttatat tagtaaggtt tgttttgcaa caaccattac tactagtatt agaagaatta 8040 agtttaattt ctttcacgat cttcactttt aacttttgcg tttatgagtt aaatgggagt 8100 ttttgtgggt ttttcttcca atgctcagca accctcaacg cactgcattt cgtcttcttc 8160 tttaagcttg agctggatgc tcagctggtt tcgcatagcg aaacttatcc tgttccatag 8220 aagg 8224 //