ID   AB368501; SV 1; linear; genomic RNA; STD; VRL; 2206 BP.
XX
AC   AB368501;
XX
DT   16-NOV-2008 (Rel. 97, Created)
DT   18-JAN-2010 (Rel. 103, Last updated, Version 2)
XX
DE   Cucumber mosaic virus isolate PF segment RNA3, complete sequence.
XX
KW   .
XX
OS   Cucumber mosaic virus (cucumber mosaic cucumovirus)
OC   Viruses; Riboviria; Bromoviridae; Cucumovirus.
XX
RN   [1]
RP   1-2206
RA   Maoka T.;
RT   ;
RL   Submitted (14-NOV-2007) to the INSDC.
RL   Contact:Tetsuo Maoka National Agricultural Research Center for Hokkaido
RL   Region, Potato Production and Protection Research Team; Hitsujigaoka,
RL   Toyohira, Sapporo, Hokkaido 062-8555, Japan
XX
RN   [2]
RX   DOI; 10.1007/s11262-009-0414-6.
RX   PUBMED; 19866353.
RA   Maoka T., Saito-Hayano Y., Iwasaki M., Yoshida K., Masuta C.;
RT   "Mixed infection in tomato to ensure frequent generation of a natural
RT   reassortant between two subgroups of Cucumber mosaic virus";
RL   Virus Genes 40(1):148-150(2010).
XX
DR   MD5; c22ffec9d7b5dfcf7468636d380bb8b5.
DR   EuropePMC; PMC3550734; 23637513.
DR   RFAM; RF01084; TLS-PK3.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2206
FT                   /organism="Cucumber mosaic virus"
FT                   /segment="RNA3"
FT                   /host="Solanum lycopersicum"
FT                   /isolate="PF"
FT                   /serotype="P"
FT                   /mol_type="genomic RNA"
FT                   /country="Japan:Hokkaido, Kameda, Ohno-cho"
FT                   /collection_date="1982"
FT                   /note="subgroup II"
FT                   /db_xref="taxon:12305"
FT   CDS             97..936
FT                   /codon_start=1
FT                   /transl_table=1
FT                   /gene="3a"
FT                   /product="3a protein"
FT                   /db_xref="InterPro:IPR000603"
FT                   /db_xref="UniProtKB/TrEMBL:B6VQB4"
FT                   /protein_id="BAG84174.1"
FT                   /translation="MAFQGTSRTLTQQSSAASSDDLQKILFSPDAIKKMATECDLGRHH
FT                   WMRADNAISVRPLVPQVTSNNLLSFFKSGYDAGELRSKGYMSVPQVLCAVTRTVSTDAE
FT                   GSLKIYLADLGDKELSPIDGQCVTLHNHELPALISFQPTYDCPMELVGNRHRCFAVVVE
FT                   RHGYIGYGGTTASVCSNWQAQFSSKNNNYTHAAAGKTLVLPYNRLAEHSKPSAVARLLK
FT                   SQLNNVSPSRYLLPNVALNQNASGHESEILNESPPFAIGSPSASRNNSFRSQVVNGL"
FT   CDS             1229..1885
FT                   /codon_start=1
FT                   /transl_table=1
FT                   /gene="CP"
FT                   /product="Coat Protein"
FT                   /db_xref="GOA:B6VQB5"
FT                   /db_xref="InterPro:IPR000247"
FT                   /db_xref="InterPro:IPR023800"
FT                   /db_xref="InterPro:IPR037137"
FT                   /db_xref="UniProtKB/TrEMBL:B6VQB5"
FT                   /protein_id="BAG84175.1"
FT                   /translation="MDKSGSPNASRTSRRRRPRRGSRSASGADAGLRALTQQMLRLNKT
FT                   LAIGRPTLNHPTFVGSESCKPGYTFTSITLKPPEIEKGSYFGRRLSLPDSVTDYDKKLV
FT                   SRIQIRINPLPKFDSTVWVTVRKVPSSSDLSVATISAMFGDGNSPVLVYQYAASGVQAN
FT                   NKLLYDLSEMRADIGDMRKYAVLVYSKDDKLEKDEIVLHVDVEHQRIPISRMLPT"
XX
SQ   Sequence 2206 BP; 500 A; 519 C; 525 G; 662 T; 0 other;
     gtaatcttac cactttactt tcacgtcgtg tcgcgtcagt ccacgctgtg tgtgtgtgtg        60
     tgttagttag tgtgtcgtgt ctagattacc aaggttatgg ctttccaagg taccagtagg       120
     acgttaactc aacagtcctc ggcggcgtcg tctgacgact tacagaagat attattcagc       180
     cccgatgcca tcaagaagat ggctactgag tgtgacctag gtcgacatca ttggatgcgc       240
     gcggataacg ccatctctgt cagacctctc gttccccaag taaccagtaa caacttattg       300
     tctttcttta aatctgggta tgatgccggt gaattgcgct ctaaaggcta tatgagcgtt       360
     cctcaagtgc tgtgtgccgt taccaggacg gtttctacgg atgctgaggg ttctttgaaa       420
     atttatttgg ctgacctagg tgataaagaa ttatccccaa ttgatgggca atgtgttact       480
     ttacataatc atgagctccc tgctttgata tctttccaac ctacctacga ttgccccatg       540
     gaattagttg gcaatcggca tcgatgtttt gcggtagtcg ttgagagaca tggttatatt       600
     ggttacggtg gtaccactgc tagcgtgtgt agtaactggc aagcccagtt ttcttcaaag       660
     aataataatt acacacacgc cgctgctggt aagactcttg tgttgcctta caacagatta       720
     gctgagcatt cgaaaccgtc agccgttgct cgcctgttga agtcgcagtt aaacaacgtt       780
     agcccatcgc gctatctttt gccgaacgtt gctcttaatc aaaatgcgtc tgggcacgag       840
     tccgagattt taaacgaaag ccctcccttc gctataggga gtccgtccgc gtcccgtaac       900
     aatagcttca gatcgcaggt ggttaacggt ctttagtgtt ttgttacgtt gtacctatgt       960
     atatatatac tacgtttatc ttccgtatgt aaatacatgt gagtctagag tcccgtgtga      1020
     gttgtaacgg tagacatctg tgacgcgaag ccgcctgaag atttcccatc tggggttagt      1080
     aagtccacat cacagtttta aggttcaatt ccttttgctc cctgttgggc cccttacttt      1140
     ctcatggatg cttctccgcg agatagcgtt tagttgttca cctgagtcgt gtgttttgtg      1200
     tgttttgttt tcgcgtctta gtgtgcctat ggacaaatct ggatctccca atgctagtag      1260
     aacctcccgg cgtcgtcgcc cgcgtagagg ttctcggtcc gcttctggtg cggatgcagg      1320
     gttgcgtgct ttgactcagc agatgttgag actcaataaa accctcgcca ttggtcgtcc      1380
     cactcttaac cacccaacct tcgtgggtag tgaaagctgt aaacccggtt acactttcac      1440
     atctattacc ctgaaaccgc ctgaaattga gaaaggttca tattttggta gaaggttgtc      1500
     tttgccagat tcagtcacgg actatgataa gaagcttgtt tcgcgcattc aaatcaggat      1560
     taatcctttg ccgaaatttg attctaccgt gtgggttaca gttcggaaag taccttcatc      1620
     atccgatctt tccgtcgcca ccatctctgc tatgtttggc gatggtaact caccggtttt      1680
     ggtttatcag tatgctgcgt ccggagttca ggccaacaat aagttacttt atgacctgtc      1740
     cgagatgcgc gctgatatcg gcgacatgcg taagtacgcc gtcctggttt actcgaaaga      1800
     cgataaacta gagaaggacg agattgtact tcatgtcgac gtcgagcatc aacgaattcc      1860
     tatctcacgg atgctcccga cttagtccgt gtgtttaccg gcgtccgaag acgttaaact      1920
     acactctcaa tcgcgagtga tgagttggta gtattgctcc aaactgcctg aggtccctaa      1980
     acgtgttgtt gcgcggggaa cgggttgtcc atccagctta cggctaaaat ggtcagtcgt      2040
     gtctttcaca cgccgatgtc ttacaagatg tcgaggtacc cttgaaatca tctcctagat      2100
     ttcttcggaa gggcttcgtg agaagctcgt gcacggtaat acactgatat taccaagagt      2160
     gcgggtatcg cctgtggttt tccacaggtt ctccataagg agacca                     2206
//