ID   AB353120; SV 1; linear; genomic RNA; STD; VRL; 1187 BP.
XX
AC   AB353120;
XX
DT   29-JAN-2008 (Rel. 94, Created)
DT   01-APR-2008 (Rel. 95, Last updated, Version 2)
XX
DE   Shallot yellow stripe virus gene for NIb-CP precursor, partial cds.
XX
KW   .
XX
OS   Shallot yellow stripe virus
OC   Viruses; Riboviria; Potyviridae; Potyvirus.
XX
RN   [1]
RP   1-1187
RA   Fuji S., Yamamoto H.;
RT   ;
RL   Submitted (26-JUL-2007) to the INSDC.
RL   Contact:Shin-ichi Fuji Akita Prefectural University, Bioresource Sciences;
RL   Shimoshinjo, Akita, Akita 010-0195, Japan
XX
RN   [2]
RX   DOI; 10.1007/s10327-008-0081-9.
RX   AGRICOLA; IND44037160.
RA   Yamamoto H., Fuji S.;
RT   "Rapid determination of the nucleotide sequences of potyviral coat protein
RT   genes using semi-nested RT-PCR with universal primers";
RL   J. Gen. Plant Pathol. 74(2):97-100(2008).
XX
DR   MD5; a5198e9174198468120b41d4602174eb.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1187
FT                   /organism="Shallot yellow stripe virus"
FT                   /mol_type="genomic RNA"
FT                   /isolation_source="welsh onion"
FT                   /db_xref="taxon:62059"
FT   CDS             <1..1051
FT                   /codon_start=2
FT                   /transl_table=1
FT                   /product="NIb-CP precursor"
FT                   /note="3'terminal region"
FT                   /db_xref="GOA:B0I309"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="UniProtKB/TrEMBL:B0I309"
FT                   /protein_id="BAG06181.1"
FT                   /translation="NIGLRLFVLLWSKHGDMMNCYTRSRLFYKWVLEQAPYNLIAQTGK
FT                   APYIAETALKRLYMDEQATESELEKYSRLYQILDEHIPTPSYVSYQASETEDAANVNTD
FT                   KQIGKSKDKDRDVDVGTSGEFSVPKVKMLSDKMRLPRVGKKVILNGKHLLTYKPDQVDL
FT                   YNTRATHAQFKTWYDAVKLEYELTDEQMKIVMNGLMVWCIENGTSQNLTGVWTMMDGDN
FT                   QMEYPLSPIIDNAKPTFRQIMAHFSDAAEAYIEYRNATEKYMPRYGLQRNLREYSLARY
FT                   AFDFYEMNSKTPIRAKEAHMQMKAAAVRGVANRMFGLDGNISTDDENTERHTAADVNKD
FT                   HHTLLGLRM"
XX
SQ   Sequence 1187 BP; 403 A; 208 C; 277 G; 299 T; 0 other;
     gaacatcggc ttgaggctat ttgtgctgct atggtcgaag catggggata tgatgaattg        60
     ttacacgaga tccagattat tttataagtg ggtgttagag caagcaccat ataatttaat       120
     agcccaaact ggaaaggcgc cgtacattgc agaaacagca cttaaaagat tgtacatgga       180
     tgaacaagca actgagagtg agttagagaa gtatagtcgg ctttaccaaa tcttagatga       240
     gcacatacca acaccgagtt atgtgtcata tcaagcttca gaaacagaag acgctgctaa       300
     tgtgaacact gataagcaga ttggaaagag taaggataag gatagagatg ttgacgttgg       360
     tacatcgggt gagttttcag tgccaaaagt gaaaatgtta tcggataaga tgcgtttgcc       420
     acgagttggg aagaaggtaa tacttaatgg caaacacctt ttaacttaca agcctgatca       480
     ggttgattta tacaatacac gggcaacaca cgcacagttt aaaacgtggt atgacgcagt       540
     gaaactcgaa tatgaactga cggatgaaca gatgaaaata gtcatgaatg ggttaatggt       600
     gtggtgtatt gaaaatggca catcacaaaa cttaacggga gtttggacaa tgatggatgg       660
     cgacaaccaa atggaatatc cgctcagccc tattattgac aacgcaaaac caacatttag       720
     acaaataatg gcacacttca gtgacgcagc tgaagcgtac attgaatata ggaatgccac       780
     agaaaaatac atgccccggt atggacttca gcgaaactta agagaataca gcttagcacg       840
     ttacgcattc gacttttatg agatgaattc aaagacgccg atccgcgcga aggaagctca       900
     tatgcagatg aaagcagcag cggttagagg ggtagctaac cgcatgtttg gcttggatgg       960
     taacataagc accgatgatg agaacacaga acgacataca gcagctgatg tgaataagga      1020
     tcatcacaca ctgctcggtc ttcgtatgta ataaacatat atatatttta atatatagtg      1080
     tcgtgcatta tctttcgtta tatttgaata tgagcaaaca cagtgtggtt acaccaccgt      1140
     ttgtggcata gtatatgata taacttcgct agcattattt gcaccat                    1187
//