ID AB279741; SV 2; linear; genomic RNA; STD; VRL; 3707 BP. XX AC AB279741; XX DT 26-OCT-2006 (Rel. 89, Created) DT 28-JAN-2009 (Rel. 99, Last updated, Version 4) XX DE Arabis mosaic virus genomic RNA, segment RNA2, complete sequence, isolated DE from lily. XX KW . XX OS Arabis mosaic virus OC Viruses; Riboviria; Picornavirales; Secoviridae; Comovirinae; Nepovirus. XX RN [1] RP 1-3707 RA Imura Y.; RT ; RL Submitted (24-OCT-2006) to the INSDC. RL Contact:Yoshiyuki Imura Nihon University, College of Bioresource Sciences, RL Lab. of Plant Pathology; 1866 Kameino, Fujisawa, Kanagawa 252-8510, Japan RL URL :http://hp.brs.nihon-u.ac.jp/~byouri/ XX RN [2] RX DOI; 10.1007/s11262-008-0268-3. RX PUBMED; 18696225. RA Imura Y., Oka H., Kimata K., Nasu M., Nakahama K., Maeda T.; RT "Comparisons of complete RNA-2 sequences, pathological and serological RT features among three Japanese isolates of Arabis mosaic virus"; RL Virus Genes 37(3):333-341(2008). XX DR MD5; 863b632de717e79f82f717e722a4b1b5. XX FH Key Location/Qualifiers FH FT source 1..3707 FT /organism="Arabis mosaic virus" FT /segment="RNA2" FT /mol_type="genomic RNA" FT /country="Japan:Kochi" FT /isolation_source="naturally infected lily cv. Casablanca" FT /collection_date="1997" FT /db_xref="taxon:12271" FT CDS 261..3512 FT /codon_start=1 FT /transl_table=1 FT /gene="RNA2" FT /product="polyprotein P2 119KDa" FT /db_xref="GOA:A0A9J8" FT /db_xref="InterPro:IPR005054" FT /db_xref="InterPro:IPR005305" FT /db_xref="InterPro:IPR005306" FT /db_xref="InterPro:IPR021081" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:A0A9J8" FT /protein_id="BAF35853.1" FT /translation="MGILYSVYRWIDGPPPAPTYNIYGNFREIQATLREAENARQNMYM FT FLELPLEYPQGAPLVLPTEPVKAQEVVVPPVKVIPSPPPMPRSYSRPIGAFAPTRSGFI FT RATVERLTREREESRAAALFAELPLEYPQGAPLVVPRGFAAMRWNYHATWRRWYDASDE FT RVLCAHPGGPALPPPPPPLKIQKLPSFEERLQTALLRQACARASALETSLGLNMAWVAK FT AIIPSISVCCADGRTTGGQTIAQEADPINHRVASNTAPGRAQWISERRSALRRREQANS FT LQGLAAQTDMTFEQARNAYLGAADMIEQGLPLLPSLRNAYAPRGLWRGPSTRANYTLDF FT RLNGIPTGQNTLEILYNPVSDEEMDDYRDRGMSAVVIDALEIAINPFGMPGNPTDLTVV FT TTYGHERNMERAFIGSSSTFLGNGLARAIFFPGLQYSQEEPRRESLIRLYVASTNATVD FT ADSILAAISVGTLRQHIGSLHNRTVASSVHAAQVQGTTLRATMMGNAVVVSPEGSLVTG FT TPEANVQMGGGSSMRMVGPLAWENVEEPGQTFTIRNRSRSMRVDRNADVGVALPRMSTT FT TRGLAGRGSVQVPKDCQAGKYLKTLDLRDMISGFSGIQYEKWITAGLIMPDFKVVIRYP FT ANAFTGITWVMSFDAYNRITSSISTTASPAYTLSVPHWLLHHKNGTTSCDIDYGELCGH FT ALWFSATTFESPKLHFTCLTGNNKELAADWEFVVELYAEFEAAKTFLGRPNFIYSAEAF FT NGSFKFLTIPPLEYDLSTTSAYKSVSLLLGQTLVDGIHKVYNYNNTLLSYYLGIGGVVK FT GRVHICSPCTYGIVLRVVSEWNGVTNNWNQLFKYPGCYIDEDGNFEIEIRSPYHRTPLR FT LLDGQAASSFTSTLNFYAISGPIAPSGETAKMPVVVQIDEIALPDLSVPTFPNDYFLWV FT DFSAFTVDVEEYVIGSRFFDISSTTSTVALGDNPFAHMIACHGLHHGILDLKLMWDLEG FT EFGKSSGGVTITRLCGDKATGMDGASRVCALQNMSCETELYVGNYAGANPNTALSLYSR FT WLAIKLDKAKSMKMLRVLCKPRGNFEFYGRTCFKV" XX SQ Sequence 3707 BP; 913 A; 781 C; 900 G; 1113 T; 0 other; atgaaaaatt ttgtggagtt ttcatataaa cgcaatccac aaccctttca acgaagagtt 60 tgagaaactc aaaattgttc tttgtcaatc cgttaagagc ggaaacatag ttaagccgtt 120 aagagcggta caaaagcgaa gagtttaaga aactcacaat tttcttctat ttccttctta 180 cttacgtgtt ttatttattt agtgtttgtt ttgtttgttt aataggagga gtattttgct 240 tcttttaatt ttctgccctt atgggcattt tatattctgt ttatcggtgg attgatggtc 300 caccgccagc gcctacctac aacatatacg gaaatttccg tgaaattcag gctaccttga 360 gagaagctga gaatgcgcgg caaaacatgt atatgtttct ggagttacca ttggaatacc 420 ctcaaggtgc tcctttggtg ctgccgactg agccggtaaa agctcaagag gtggtggtgc 480 cacctgtgaa ggttattcct tcaccgcccc ctatgccaag gtcttattct aggccaattg 540 gggcgtttgc accaacccgg tcaggattta tccgggccac tgtggaaaga ctcacccggg 600 aacgggagga gtcgagagct gcggcactct ttgccgaatt acctttggag tacccacaag 660 gtgctccttt ggttgtcccc cgtggcttcg cagccatgag gtggaactat catgccacct 720 ggaggcggtg gtatgacgcc agtgatgagc gtgttttatg cgctcaccct ggtggacctg 780 ctttgcctcc gccccccccc cccttaaaaa tccaaaaact accctctttc gaggagaggt 840 tgcagactgc ccttttaagg caggcttgtg ctagggcttc tgccctggag acctcgctgg 900 gccttaatat ggcctgggtg gccaaggcta tcatccccag catttcagta tgttgcgctg 960 atggtaggac taccggcggg caaacaattg cccaggaagc tgatcctatt aaccataggg 1020 ttgcttccaa cacagccccc ggtagggcac aatggatctc agagcgccgc agtgctttga 1080 gacggagaga acaggctaat agcctgcagg gccttgctgc tcaaacggac atgacgtttg 1140 agcaagctag aaatgcttat ctcggcgcgg ccgatatgat agagcaaggt ctaccgttgc 1200 tgccttcact gagaaatgct tatgcacctc gtggtttatg gaggggacct tccaccagag 1260 ccaattatac gcttgatttt cggctcaatg gaatccccac cggacaaaat actttagaaa 1320 tactgtataa tccggtgtcg gacgaggaaa tggatgacta ccgtgacagg ggtatgtcag 1380 cggtcgtgat tgatgcactg gaaattgcta tcaatccttt tggaatgcca ggcaatccga 1440 ctgatcttac tgtcgttacg acatatgggc acgaacgtaa tatggagcgt gccttcattg 1500 gctcttcgtc tacctttctt ggaaatggtt tagcgagagc tattttcttt cctggtttgc 1560 aatatagtca ggaagaaccg aggcgcgaat ccttgattcg tctatatgtt gcttctacta 1620 atgccactgt tgatgctgat tctatattag cagccattag tgttggcact ttgcgccagc 1680 acattggttc gcttcataat agaacggtgg caagttctgt gcatgctgct caagtgcagg 1740 gcactacttt gagagctact atgatgggta atgctgtcgt ggtttctcct gaaggaagtc 1800 ttgttactgg aacccctgaa gccaatgttc aaatgggagg tggttctagc atgcgaatgg 1860 ttggtcccct ggcgtgggaa aatgttgaag aaccaggtca gacctttacc ataagaaacc 1920 gctcccggtc tatgcgagta gatcggaatg ctgatgttgg agttgccctt cctagaatga 1980 gcacaacaac gcggggtctt gctggtagag gttctgtcca ggtacccaaa gactgccagg 2040 cagggaagta tctgaaaacc cttgatttga gagatatgat tagtgggttt tcaggtattc 2100 aatatgaaaa gtggatcact gctggactta ttatgccaga ttttaaagtg gtgattcgct 2160 acccggccaa tgcttttaca ggtattacgt gggttatgag ctttgatgcc tataatcgaa 2220 taactagtag tatttctacc actgctagtc ctgcgtatac actgtcagtc ccacattggc 2280 tgttgcatca caaaaatggg acaacctcat gtgatattga ttatggagag ctctgtggcc 2340 atgctttgtg gtttagtgcc actacttttg agagccccaa actccatttc acatgcctca 2400 ctggaaataa caaagaactt gctgcagatt gggaatttgt agtagagcta tatgccgagt 2460 ttgaggcggc aaaaactttt cttggaagac ccaatttcat ttatagcgct gaagctttca 2520 atggatcttt caagtttctg actattccac cactggaata tgacctgagt actaccagtg 2580 cctacaagag tgtgtccctt cttctgggcc aaactcttgt tgatgggatt cacaaagtgt 2640 acaattacaa taatacactt ttgagttact atcttggtat tggtggtgtg gtcaagggca 2700 gagtacatat atgcagccct tgtacttatg gcatagtcct aagagttgtt agtgaatgga 2760 acggggtcac taacaactgg aatcaattgt ttaaataccc cggatgttat atcgatgagg 2820 atgggaattt tgaaattgaa attcgttccc catatcatcg aactccactg cgtttactgg 2880 atggacaggc ggcgagttct tttacgagca cgctgaattt ctatgcaatt tcagggccaa 2940 tagccccaag tggagaaact gccaagatgc cagtggtagt gcaaattgat gaaattgcac 3000 tgccggatct ttctgtccca actttcccaa atgattattt cctttgggtg gacttttctg 3060 ctttcactgt tgatgtagaa gagtatgtaa tagggtcgag gttttttgat atttcctcta 3120 ccactagtac tgtcgccctg ggagataatc cttttgctca catgatagct tgtcatggac 3180 tccatcatgg aatccttgac cttaagttaa tgtgggattt ggaaggtgag ttcggaaaga 3240 gttctggtgg tgttactatc acacgtttgt gtggtgataa ggctactggc atggatggag 3300 catctcgtgt ttgtgctttg caaaacatga gttgcgaaac tgaactgtac gttgggaatt 3360 atgctggtgc caatcctaac acagcacttt ccctgtacag ccgttggctt gctattaagt 3420 tggacaaagc taagagtatg aaaatgctca gagtgttgtg caagccaaga ggaaactttg 3480 aattttacgg gagaacgtgc tttaaagttt agtttcctca aatagtcttg ggaatctgac 3540 tataaaagac cctacttgta ttatatttat atttagcttg tttactgctt ctgtgtgttt 3600 aatttcatgc atttagtggc gacagtgtgt tgtttgtcct ttggacacac ttgccttgtt 3660 ggacgcaaaa agattttcat tttcttttta ctgcttttgt gaatttt 3707 //