ID AB196001; SV 1; linear; genomic RNA; STD; VRL; 6435 BP. XX AC AB196001; XX DT 26-JUL-2010 (Rel. 105, Created) DT 26-JUL-2010 (Rel. 105, Last updated, Version 1) XX DE Potato virus X genomic RNA, complete genome, strain: TO. XX KW . XX OS Potato virus X OC Viruses; Riboviria; Tymovirales; Alphaflexiviridae; Potexvirus. XX RN [1] RP 1-6435 RA Namba S., Komatsu K., Oshima K., Yamaji Y.; RT ; RL Submitted (02-DEC-2004) to the INSDC. RL Contact:Shigetou Namba The University of Tokyo, Graduate School of RL Agricultural and Life Sciences, Department of Agricultural and RL Environmental Biology, Laboratory of Plant Pathology; 1-1-1 Yayoi, RL Bunkyo-ku, Tokyo 113-8657, Japan XX RN [2] RX DOI; 10.1007/s11262-005-2205-z. RX PUBMED; 15965614. RA Komatsu K., Kagiwada S., Takahashi S., Mori T., Yamaji Y., Hirata H., RA Ozeki J., Yoshida A., Suzuki M., Ugaki M., Namba S.; RT "Phylogenetic characteristics, genomic heterogeneity and symptomatic RT variation of five closely related Japanese strains of Potato virus X"; RL Virus Genes 31(1):99-105(2005). XX DR MD5; 882e9e9f22a8af76c902e44c910767af. DR EuropePMC; PMC5377869; 28466060. DR RFAM; RF00184; PVX_3. XX FH Key Location/Qualifiers FH FT source 1..6435 FT /organism="Potato virus X" FT /strain="TO" FT /mol_type="genomic RNA" FT /country="Japan:Nagoya" FT /db_xref="taxon:12183" FT CDS 85..4455 FT /codon_start=1 FT /transl_table=1 FT /gene="RdRp" FT /product="RNA dependent RNA polymerase" FT /db_xref="GOA:E1CAI6" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:E1CAI6" FT /protein_id="BAJ12051.1" FT /translation="MAKVREVYQSFTDSTTKTLIQDEAYRNIRPIMEKHKLANPYAQTV FT EAANDLEGFGIATNPYSIELHTHAAAKTIENKLLEVLGSILPQEPVTFMFLKPRKLNYM FT RRNPRIKDIFHNVAIEPRDVARYPKETIIDKLTEITTDTAYISDTLHFLDPGYIVETFQ FT NCPKLQTLYATLVLPVEAAFKMESTHPNIYSLKYFGDGFQYIPGNHGGGAYHHEFAHLQ FT WLKVGKIKWRDPKDSFLGHLNYTTEQVEMHTVTVQLQESFAANHLYCIRRGDLLTPEVR FT TFGQPDRYVIPPQIFLPKVHNCKKPILKKTMMQLFLYVRTVKVAKNCDIFAKVRQLIKS FT SDLDKYSAVELVYLVSYMEFLADLQATTCFSDTLSGGLLTKTLAPVRAWIQEKKMQLSG FT LEDYAKLVKAVDFHPVDFSFKVETWDFRFHPLQAWKAFRPKEVSDVEEMESLFSDGDLL FT DCFTRMPAYAVNAEEDLAAIRKAPEMDVGQEVKEPAGDRNQYSNPAETFLNKLHKKHSR FT EVKHQAAKKAKRLAEIQESMRAEGEAESNEMSGGMGAIPSNAELPSTSDARQELILPTT FT KPVPARWEDASFPDSSVEEEQVKLPGKEAVETATQQVIEGLPWKHWIPQLNAVGFKALE FT IQRDRSGTMIMPITEMVSGLEKEDFPEGTPKELARELLAMNRSPVTIPLDLLRARDYGS FT DVKNKRIGAITKTQAASWGEYLTGKIESLTERKVATCVIHGAGGSGKSHAIQKALREIG FT KGSDITVVLPTNELRLDWSKKVPNTEPYMFKTYEKALIGGTGSIVIFDDYSKLPPGYIE FT ALICFYSKIRLVILTGDSRQSVYHETAEDASIRHLGPATEYFSKYCRYYLNATHRNKKD FT LANMLGVYSERTGVTEISMSAEFLEGIPTLVPSDEKRRLYMGTGRNDTFTYAGCQGLTK FT PKVQIVLDHNTQVCSANVMYTALSRATDRIHFVNTSANSSAFWEKLDSTPYLKTFLSVV FT RGQALREYEPAEAEPIREPEPQTHMRVENEESVLEEYKEELLEKFDREIHSESHGHSNC FT VQTEDTTIQLFSHQQAKDETLLWATIDARLKTSNQETNFREFLSKKDIGDVLFLNYQKA FT MGLPKERIPFSQEVWEACAHEVQSKYLSKSKCNLINGTVRQSPDFDENKIMVFLKSQWV FT TKVEKLGLPKIKPGQTIAAFYQQTVMLFGTMARYMRWFRQAFQPKEVFINCETTPEDMS FT AWALNNWNFGRPSLANDYTAFDQSQDGAMLQFEVLKAKHHCIPEEIIQAYIDIKTNAQI FT FLGTLSIMRLTGEGPTFDANTECNIAYTHTKFDIPAGTAQVYAGDDSALDCVPEVKHSF FT HRLEDKLLLKSKPVITQQRKGSWPEFCGWLITPKGVMKDPIKLHVSLKLAEAKGELKKC FT QDSYEIDLSYAYDHKDSLHDLFDEKQCQAHTLTCRTLIKSGRGTVSLPRLRNFL" FT CDS 4486..5166 FT /codon_start=1 FT /transl_table=1 FT /gene="TGBp1" FT /product="Triple gene block protein 1" FT /db_xref="GOA:E1CAI7" FT /db_xref="InterPro:IPR027351" FT /db_xref="UniProtKB/TrEMBL:E1CAI7" FT /protein_id="BAJ12052.1" FT /translation="MDILIISLKSLGYSRTHKSLDSGPLVVHAVAGAGKSTALRKLILR FT HPTFTVHTLGVPDKVSIRTRGIQKPGPIPEGNFAILDEYTLDNTTRNSYQALFADPYQA FT PEFSLEPHFYLETSFRVPRKVADLIAGCGFDFETNSQEEGHLEITGIFKGPLLGKVIAI FT DEESETTLSRHGVEFVKPCQVTGLEFKVVTIVSAAPIEEIGQSTAFYNAITRSKGLTYV FT RAGT" FT CDS 5147..5494 FT /codon_start=1 FT /transl_table=1 FT /gene="TGBp2" FT /product="Triple gene block 2" FT /db_xref="GOA:Q77RX1" FT /db_xref="InterPro:IPR001896" FT /db_xref="UniProtKB/TrEMBL:Q77RX1" FT /protein_id="BAJ12053.1" FT /translation="MSAQGHRLTAPVNSEKVYIVLGLSFALVSITFLLSRNSLPHVGDN FT IHSLPHGGAYRDGTKAILYNSPNLGSRVSLHNGKNAAFAAVLLLTLLIYGSKYISQRNH FT TCACGNNHSSH" FT CDS 5427..5639 FT /codon_start=1 FT /transl_table=1 FT /gene="TGBp3" FT /product="Triple gene block 3" FT /db_xref="GOA:Q85247" FT /db_xref="InterPro:IPR003411" FT /db_xref="UniProtKB/TrEMBL:Q85247" FT /protein_id="BAJ12054.1" FT /translation="MEVNTYLNAIILVLVVTIIAVISTSLVRTEPCVIKITGESITVLA FT CKLDAETIRAIADLKPLSVERLSFH" FT CDS 5650..6363 FT /codon_start=1 FT /transl_table=1 FT /gene="CP" FT /product="coat protein" FT /db_xref="GOA:E1CAJ0" FT /db_xref="InterPro:IPR000052" FT /db_xref="UniProtKB/TrEMBL:E1CAJ0" FT /protein_id="BAJ12055.1" FT /translation="MSAPASTTQATGSTTSTTTETAGATPATASGLFTIPDGDFFSTAR FT AIVASNAVATNEDLSKIEAIWKDMKVPTDTMAQAAWDLVRHCADVGSSAQTEMIDTGPY FT SNGISRARLAAAIKEVCTLRQFCMKYAPVVWNWMLTNNSPPANWQAQGFKPEHKFAAFD FT FFNGVTNPAAIMPKEGLIRPPSEAEMNAAQTAAFVKITKARAQSNDFASLDAAVTRGRI FT TGTTTAEAVVTLPPP" XX SQ Sequence 6435 BP; 1968 A; 1526 C; 1481 G; 1460 T; 0 other; gaaaactaaa ccatacacca ccaacacaac caaacccacc acgcccaatt gttacacacc 60 cacttgaaaa agtaagtcta acaaatggcc aaagtgcgcg aggtttacca atcctttaca 120 gactccacca caaaaactct catccaagat gaggcttata gaaatattcg tcccatcatg 180 gaaaaacaca aactagctaa cccgtacgct caaacggttg aagcagctaa tgatctagag 240 gggttcggca tagctaccaa tccctatagc attgaattgc atacacatgc agccgctaag 300 accatagaga ataaacttct agaggtgctt ggttccatcc taccacaaga acctgttaca 360 tttatgttcc ttaaacccag aaagctaaac tacatgagaa gaaacccgag gattaaggac 420 attttccaca atgttgccat cgagccgaga gacgtagcaa ggtaccccaa ggaaacaata 480 attgacaaac ttacagagat cacaacggat acagcataca ttagtgacac tctgcacttc 540 ttggatccgg gctacatagt ggagacattc caaaactgcc caaaattgca aacattgtat 600 gcgaccttag ttctccccgt tgaggcagcc ttcaaaatgg aaagcactca cccgaacata 660 tacagcctca aatacttcgg ggatggtttc cagtatatac caggcaacca tggtggtgga 720 gcataccatc atgaattcgc tcatttacaa tggctcaaag tgggaaagat caagtggagg 780 gaccccaagg atagctttct cggacatctc aactacacga ctgagcaggt tgagatgcac 840 acagtgacag tacagttaca ggaatcgttc gcggcgaacc acttgtactg catcaggaga 900 ggagacttgc ttacaccgga ggtgcgcacc tttggccaac ctgacaggta tgtgatccca 960 ccacagatct ttctcccaaa agtccacaac tgcaagaagc cgattcttaa gaaaactatg 1020 atgcagctct tcttgtatgt taggacagtc aaggtcgcaa aaaattgtga catttttgcc 1080 aaagtcagac aattaatcaa atcatctgac ctggacaaat attctgctgt ggaactggtt 1140 tacttagtaa gctatatgga gttccttgcc gatttacaag ctaccacctg cttctcagac 1200 acactttctg gtggcttgct aacaaagacc cttgcaccgg tgagggcttg gatacaagag 1260 aaaaagatgc aactgtctgg tcttgaggac tacgcgaaat tagtcaaagc agttgatttc 1320 cacccggtgg atttttcctt taaagtggaa acttgggact ttagattcca ccccctgcaa 1380 gcgtggaaag ccttccgacc aaaggaagtg tcggatgtgg aggaaatgga aagtttgttc 1440 tcagatgggg acctgcttga ttgcttcacc agaatgccag cttatgcagt aaacgcagag 1500 gaagatttag ctgcaatcag gaaagcgcct gagatggatg tcggccaaga agttaaagaa 1560 cctgcaggag acagaaatca atactcgaac cctgcagaaa ctttcctcaa caagctccac 1620 aagaagcaca gtagggaggt gaaacatcag gccgcaaaga aagctaaacg cttagctgag 1680 atccaggagt ccatgagagc tgaaggcgag gccgaatcaa atgagatgag cgggggtatg 1740 ggagcaatac ctagcaacgc cgaacttccc agcacgagtg atgccagaca agagctcata 1800 ctcccaacca ctaaacctgt tcctgcaagg tgggaagatg cttcatttcc agattctagt 1860 gtggaagagg agcaagtgaa actccctgga aaagaagccg ttgagacagc aacgcaacaa 1920 gtcatcgaag gactcccttg gaagcactgg attcctcaac taaatgctgt tggattcaag 1980 gcgctggaaa ttcagaggga taggagtgga acaatgatca tgcccatcac agaaatggtc 2040 tccgggttgg aaaaggagga cttcccggaa ggaactccaa aagagttggc acgagaattg 2100 ctcgctatga acaggagccc tgtcaccatc cctttagacc tgcttagagc cagagactac 2160 ggcagtgatg tgaagaacaa gagaattggt gccatcacaa agacacaagc cgcaagttgg 2220 ggcgagtacc taacaggaaa aatagagagc ctgaccgaga ggaaagttgc gacttgtgtc 2280 attcatggag ctggaggctc tgggaaaagt catgccatcc agaaggcatt aagagaaatt 2340 ggcaagggct cggacatcac tgtagtcctg ccgaccaatg agctgcgact agattggagt 2400 aagaaagtgc ccaacactga accatatatg ttcaagacct atgaaaaggc gttgattggg 2460 ggaacaggca gtatagtcat ctttgacgac tactcaaaac ttcctcccgg ttacatagaa 2520 gccttaatct gcttctactc taaaatcagg ctagtcattc taacaggaga tagcagacag 2580 agcgtctacc atgaaactgc tgaggacgcc tccatcaggc atttgggacc agcgacagag 2640 tacttctcaa aatactgccg atactatctc aatgctacac accgcaacaa gaaagacctt 2700 gcgaacatgc ttggtgtcta cagtgagaga acgggagtca ccgaaatcag catgagcgct 2760 gagttcctag aagggatccc aactttggtg ccctcggatg aaaagaggag attgtacatg 2820 ggcaccggga ggaatgacac gttcacatat gctggatgcc aggggctaac taagccgaaa 2880 gtacaaatag tgctggacca caacacccaa gtgtgcagcg cgaatgtgat gtacacggca 2940 ctctctagag ccaccgacag gattcacttc gtgaacacaa gtgcaaactc ttcggccttc 3000 tgggaaaagt tagacagcac cccctatctc aagactttcc tatcagtggt gagaggacaa 3060 gcactcaggg agtacgagcc ggcagaggca gagccaattc gagagcctga gccccagaca 3120 cacatgcgtg tcgagaatga ggagtccgtg ctagaagagt acaaagagga actcttggaa 3180 aagtttgaca gagagatcca ttctgaatcc catggtcatt caaactgtgt ccagacggaa 3240 gacacaacca ttcagctgtt ttcgcatcaa caggcaaaag atgagaccct cctttgggcg 3300 actatagatg cgcggctcaa gaccagcaat caagagacaa acttccgaga attcttgagc 3360 aagaaagaca ttggggatgt tctgtttttg aactaccaaa aagctatggg tttgcccaaa 3420 gagcgtattc ctttctcaca agaggtctgg gaagcttgtg cccacgaagt gcaaagcaag 3480 tacctcagta agtcaaagtg caacttgatc aatgggactg tgagacagag cccagacttt 3540 gatgaaaaca aaattatggt attcctcaag tcgcaatggg tcacaaaggt ggaaaagtta 3600 ggtctaccca agattaagcc aggtcaaact atagcagctt tttatcagca gactgtgatg 3660 ctctttggaa ctatggctag gtacatgcga tggttcagac aggctttcca gccaaaagaa 3720 gtcttcataa actgtgagac cacgccagaa gacatgtctg catgggcctt gaacaactgg 3780 aattttggca gacctagctt ggctaatgat tacacagctt tcgaccagtc tcaggatgga 3840 gctatgctgc aatttgaggt gctcaaagct aagcaccact gcataccaga ggaaatcatc 3900 caagcataca tagacattaa gaccaatgca cagattttcc taggcacatt atcaattatg 3960 cgcctgactg gtgaaggccc cacttttgat gcaaacactg agtgcaacat agcttacacc 4020 catacaaagt ttgacatccc agccggaact gctcaagttt atgcaggaga cgactctgca 4080 ctggattgcg ttccagaagt gaaacatagt ttccacaggc ttgaagataa attgctcctc 4140 aagtcaaagc cagtaatcac gcaacaaagg aaaggcagtt ggcctgagtt ttgtggttgg 4200 ctgattacac caaaaggggt gatgaaagac ccaattaagc ttcatgttag cttaaaattg 4260 gccgaagcta agggtgaact caagaaatgt caagattctt atgaaattga tctgagctat 4320 gcctatgacc acaaggactc tctgcatgac ctattcgatg agaaacagtg tcaggcacat 4380 acactcactt gcagaacact aatcaagtca gggagaggca ctgtctcact tccccgcctc 4440 agaaactttc tttaaccgtt aagttacctt agagatttga ataagatgga tattctcatc 4500 attagtttga aaagtttagg ttattctagg actcataaat ctttagattc aggacctttg 4560 gtagtacatg cagtagccgg agccggtaag tccacagccc taaggaagtt gatcctcaga 4620 caccctacat tcaccgtgca tacactcggt gtccctgaca aggtgagtat cagaactaga 4680 ggcatacaga agccaggacc cattcctgag ggcaatttcg caatccttga tgagtacact 4740 ttggacaaca ccacaaggaa ttcataccag gcactttttg ccgaccctta tcaggcacct 4800 gagtttagcc tagagcccca cttctacttg gaaacatcat ttcgagttcc gaggaaagtg 4860 gcagatttga tagcaggctg tggtttcgat ttcgagacca attcacaaga agaagggcac 4920 ttagagatca ctggtatatt caaagggccc ctacttggga aggtgatagc cattgacgag 4980 gagtctgaga caacactgtc caggcatggt gttgagtttg ttaagccctg ccaagtgact 5040 ggacttgaat tcaaagtagt caccatcgtg tctgccgcgc caatagagga gattggccag 5100 tccacagctt tctacaacgc catcaccagg tcaaagggat tgacatatgt ccgcgcaggg 5160 acatagactg accgctccgg tcaactctga aaaagtgtac atagtattag gtctatcatt 5220 tgctttagtt tcaattacct ttctgctttc tagaaatagt ttaccccacg tcggtgacaa 5280 cattcacagc ctgccacacg gaggagctta cagagacggc accaaagcga tcttgtacaa 5340 ctccccaaat ctagggtcac gagtgagtct acacaacgga aagaacgcag catttgctgc 5400 cgttttgcta ctgactttac tgatctatgg aagtaaatac atatctcaac gcaatcatac 5460 ttgtgcttgt ggtaacaatc atagcagtca ttagtacttc cttagtgagg actgaacctt 5520 gtgtcatcaa gattaccgga gaatcaatca cagtgttggc ctgtaaatta gatgcagaaa 5580 ccattagagc tattgccgat ctcaagccac tctccgttga acggttaagt ttccattgat 5640 actcgaaaga tgtcagcacc agctagcaca acacaggcca cagggtcaac tacctcaact 5700 accacggaaa ctgcaggcgc aactcctgcc acagcttcag gactgttcac tatcccggat 5760 ggggatttct ttagtacagc ccgtgccata gtagccagca atgctgtcgc aacaaatgag 5820 gacctcagca agattgaggc tatttggaag gacatgaaag tgcccacaga cactatggca 5880 caggctgctt gggacttagt cagacactgc gccgatgtgg gttcatctgc tcaaacagaa 5940 atgatagata caggtcccta ttccaacggc atcagcagag ctagattggc agcagcaatt 6000 aaagaggtgt gcacacttag gcaattttgc atgaagtatg ccccagtagt atggaactgg 6060 atgttaacta acaacagtcc acctgctaac tggcaagcac aaggtttcaa gcctgagcac 6120 aaattcgctg cattcgactt cttcaatgga gtcactaacc cagctgccat catgcccaaa 6180 gaggggctta tccggccacc gtctgaagct gaaatgaatg ctgcccaaac tgctgccttt 6240 gtgaagatta cgaaggccag ggcacaatcc aacgactttg ccagcctaga tgcagctgtc 6300 actcgaggtc gtatcactgg aacaacaacc gctgaggctg ttgtcactct accaccacca 6360 taactacgtc tacataaccg acgcctaccc cagtttcata gtattttctg gtttgattgt 6420 atgaataata taaat 6435 //