ID AB178948; SV 1; circular; genomic DNA; STD; VRL; 2762 BP. XX AC AB178948; XX DT 13-MAY-2004 (Rel. 79, Created) DT 01-MAR-2008 (Rel. 95, Last updated, Version 3) XX DE Honeysuckle yellow vein mosaic virus DNA, complete genome, isolate:OT2. XX KW . XX OS Honeysuckle yellow vein mosaic virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2762 RA Were H.K., Takanami Y.; RT ; RL Submitted (11-MAY-2004) to the INSDC. RL Contact:Yoichi Takanami Kyushu University, Faculty of Agriculture; 6-10-1 RL Hakozaki, Higashi-ku, Fukuoka, Fukuoka 812-8581, Japan XX RN [2] RA Were H.K., Takanami Y.; RT "Honeysuckle yellow vein mosaic virus"; RL Unpublished. XX DR MD5; 5a8d6486f744a4d54b8217b5daa7aa36. XX FH Key Location/Qualifiers FH FT source 1..2762 FT /organism="Honeysuckle yellow vein mosaic virus" FT /isolate="OT2" FT /mol_type="genomic DNA" FT /country="Japan:Oita, Yufuin" FT /clone="pHS2" FT /note="synonym:Honeysuckle-infecting geminivirus" FT /db_xref="taxon:180587" FT CDS 137..487 FT /codon_start=1 FT /transl_table=1 FT /gene="V2" FT /product="V2" FT /db_xref="GOA:Q6L6W0" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:Q6L6W0" FT /protein_id="BAD18949.1" FT /translation="MWDPLLNDFPETVHGFRCMLAVKYLLLVEATYSPDTVGYDLIRDL FT IGVVRAKNYVEATSRYRDFHSRIQGTSPSELRRPVCQPCECPHCPRHKQKEIMGSKAHV FT SEAQDIQDVQKP" FT CDS 297..1070 FT /codon_start=1 FT /transl_table=1 FT /gene="V1" FT /product="coat protein" FT /db_xref="GOA:Q6L6V3" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:Q6L6V3" FT /protein_id="BAD18950.1" FT /translation="MSKRPADIGIFTPAFRARRRLNFDGPYVSRVNVPIAQGTSKKRSW FT AQRPMYRKPRIYRMYRSPDVPKGCEGPCKVQSFEKKDDVGHSGKMLCISDITRGNGLTH FT RVGKRFCIKSVYIIGKIWMDENIKLKNHTNNVIFWLVRDRRPVSVPYGFQEAFNMYENE FT PSTATIKQDLRDRLQVLHKFTGTVTGGQYASKEQAMIKRFWRLNHHVTYNHQEAAKYEN FT HTENALLLYMACTHASNPVYATLKIRVYFYDSVQN" FT CDS complement(1067..1471) FT /codon_start=1 FT /transl_table=1 FT /gene="C3" FT /product="replication enhancer protein" FT /db_xref="GOA:Q6L6V2" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:Q6L6V2" FT /protein_id="BAD18951.1" FT /translation="MDSRTGDIITAAQAQSGAYIWTVPSPLYFKITSHAQRPFNMDQDI FT ITAQIQFNHNLRSQLGLHKCFLTFKIWTLSHHQTSHFLILFRTQVLKYLDDLGVISINN FT VIRAVDHVLYDVLDGTEYVQQFTDIKFKLY" FT CDS complement(1212..1619) FT /codon_start=1 FT /transl_table=1 FT /gene="C2" FT /product="transcriptional trans-activator protein" FT /db_xref="GOA:Q6L6V1" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:Q6L6V1" FT /protein_id="BAD18952.1" FT /translation="MQSSPPSTAHSTPVPIKVRHRSEKKRAPRRRRIDLNCGCSIYVSL FT GCANHGFTHRGHHHCSSGSEWRVYLDSAKSPLFQNHEPRTTTVQHGSGHNNSTDPIQPQ FT SQISTGSTQVLPDFQDLDSLTSSDLAFLNFI" FT CDS complement(1519..2610) FT /codon_start=1 FT /transl_table=1 FT /gene="C1" FT /product="replication-associated protein" FT /db_xref="GOA:Q6L6V0" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:Q6L6V0" FT /protein_id="BAD18953.1" FT /translation="MAPPKRFKINSKNYFLTYPHCSLTKEEALAQIQALQTPTNKLFIR FT ICRELHEDGSPHLHILIQFEGKYQCTNQRFFDLVSPSRSAHFHPNIQGAKSSSDVKAYM FT EKDGDVVDFGVFQVDGRSARGGCQCADDAYAEAINSGSKSSALSILREKAPKDFVLQFH FT NLNSNLDRIFAPPLEEFVSPFLSSSFDQVPEQLEEWAAENVRDSAARPWRPMSIVIEGD FT SRTGKTMWARSLHPRHNYLCGHLDLSPKVYSNEAWYNVIDDVDPHYLKHFKEFMGAQRD FT WQSNTKYGKPIQIKGGIPTIFLCNPGATSSYTEYLDEEKNAALKAWAIKNAIFTTLYGP FT LYSGTHQGATQIREEESTSQAED" FT CDS complement(2160..2453) FT /codon_start=1 FT /transl_table=1 FT /gene="C4" FT /product="C4" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:Q6L6U9" FT /protein_id="BAD18954.1" FT /translation="MGALISTSSSNSKENTNAQINDSSISYPHLGQHISIQTFRELRAR FT QMSRPTWKKTETSLILEFSRSMEDQLEEVASVPTTHMPRQSTQGPSHRPCLY" XX SQ Sequence 2762 BP; 728 A; 572 C; 637 G; 825 T; 0 other; accggatggc cgcgcggaaa ttcgtggtgg gccccccctg tcggccaata gaattagtgc 60 cttgaaagtt agataagtgg atgttgacgt catcttttgt ctttatatac gtcagcccta 120 attttaaagg ttaaacatgt gggatccttt acttaacgat ttccctgaaa ccgtacacgg 180 ttttaggtgt atgctagcgg ttaaatacct tcttctggtt gaggctacat actctccgga 240 tacggtgggt tacgatctca tacgcgatct tataggtgtt gttcgtgcga agaattatgt 300 cgaagcgacc agcagatata gggattttca ctcccgcatt cagggcacgt cgccgtctga 360 acttcgacgg cccgtatgtc agccgtgtga atgtccccat tgcccaaggc acaagcaaaa 420 agagatcatg ggctcaaagg cccatgtatc ggaagcccag gatatacagg atgtacagaa 480 gccctgatgt acctaagggt tgtgaaggcc cctgtaaggt ccagtctttc gagaagaaag 540 atgatgttgg tcactctggt aaaatgttat gtatctccga tattactcgt ggtaatgggc 600 ttacacatcg cgttggtaag aggttttgta taaaatcagt ctatatcatt ggaaagatat 660 ggatggatga gaacattaag ctcaagaatc acactaataa cgtgatcttc tggcttgtta 720 gagatagacg ccctgtttcc gttccttatg gtttccaaga ggcgtttaat atgtacgaaa 780 atgaacctag tacagctact atcaaacagg atttgagaga ccgcttgcag gttctacaca 840 agttcactgg tacggttaca ggtggacaat atgcgtctaa ggaacaagct atgatcaagc 900 gtttctggag gttgaatcac catgtcacat acaatcacca agaggctgct aaatatgaga 960 accatactga aaatgctttg ttattgtata tggcctgtac tcatgccagt aatccagtgt 1020 atgctacatt aaaaattaga gtgtatttct acgattcagt acagaattaa taaagcttga 1080 attttatatc agtaaattgt tgtacatact ctgttccatc taatacatcg tacaatacat 1140 gatcaaccgc cctaattaca ttattaattg aaattacacc caaatcatct aaatacttca 1200 acacttgtgt cctaaataaa attaagaaat gcgaggtctg atgatgtgag agagtccaaa 1260 tcttgaaagt caggaagcac ttgtgtagac ccagttgaga tctgagattg tggttgaatt 1320 ggatctgtgc tgttattatg tcctgatcca tgttgaacgg tcgttgtgcg tggctcgtga 1380 ttttgaaata aaggggactt ggcactgtcc agatatacgc gccactctga gcctgagctg 1440 cagtgatgat gtcccctgtg cgtgaatcca tgatttgcac accctaaact gacgtatata 1500 gaacacccgc agttcagatc aatcctccgc ctgcgaggtg ctctcttctt ctctgatctg 1560 tgtcgcacct tgatgggtac cggagtagag tgggccgtag agggtggtga agattgcatt 1620 tttaattgcc caggccttta gggcagcatt cttctcctcg tctaaatact ctgtgtatga 1680 tgacgttgcg cctggattgc agaggaagat tgttgggata ccacctttaa tttgaattgg 1740 tttcccgtac ttggtgttgc tttgccagtc cctttgggcc cccatgaatt ctttaaagtg 1800 ctttaggtag tggggatcca cgtcatcaat gacgttgtac catgcctcgt tgctgtaaac 1860 cttggggctt aagtcaaggt ggccgcaaag gtaattatga cgtggatgta gagacctggc 1920 ccacatagtc ttccctgtcc tgctatcccc ttctatcaca atactcatgg gcctccacgg 1980 ccgcgcagcg gaatccctga cgttctcggc agcccattcc tcaagttgct ctggaacttg 2040 atcaaaggaa gaagataaaa aaggagaaac aaattcctcc aacggaggag caaaaatcct 2100 atctaaatta ctatttaaat tatgaaattg taaaacaaaa tctttgggag ctttctccct 2160 taatatagac aaggccgatg acttggaccc tgagttgatt gcctcggcat atgcgtcgtc 2220 ggcacactgg caacctcctc tagctgatct tccatcgacc tggaaaactc caaaatcaac 2280 gacgtctccg tctttttcca tgtaggcctt gacatctgac gagctcttag ctccctgaat 2340 gtttggatgg aaatgtgctg acctagatgg ggatacgaga tcgaagaatc gttgatttgt 2400 gcattggtat tttccttcga attggatgag gatgtggaga tgagggctcc catcttcgtg 2460 tagttctctg cagattcgga tgaataattt attggttggt gtttgtaggg cttgaatttg 2520 tgcaagggct tcttctttgg ttagagagca gtgtgggtat gtgaggaaat aatttttgct 2580 atttatttta aaacgctttg gtggtgccat atttacaaat atgcccttgt accccgattc 2640 ggagagaaac cttccttgct gtgaatcggt gtaatggggt acaatatata ctcctcctct 2700 ttttactttt taattttgaa attcaaaatt caaattggta aagcggccat ccgtacaata 2760 tt 2762 //