ID   AB004802; SV 1; linear; genomic RNA; STD; VRL; 1032 BP.
XX
AC   AB004802;
XX
DT   23-APR-1998 (Rel. 55, Created)
DT   16-JAN-2009 (Rel. 99, Last updated, Version 5)
XX
DE   Shallot latent virus CP gene for coat protein, complete cds, clone: SI-4C2.
XX
KW   .
XX
OS   Shallot latent virus
OC   Viruses; Riboviria; Tymovirales; Betaflexiviridae; Quinvirinae; Carlavirus.
XX
RN   [1]
RP   1-1032
RA   Sumi S.;
RT   ;
RL   Submitted (12-JUN-1997) to the INSDC.
RL   Contact:Shin-ichiro Sumi Wakunaga Pharmaceutical Co., Ltd., Institute for
RL   Biotechnology Research; 1624 Shimokotachi, Koda-Cho, Takata-Gun, Hiroshima
RL   739-11, Japan
XX
RN   [2]
RX   DOI; 10.1007/s007050050358.
RX   PUBMED; 9687867.
RA   Tsuneyoshi T., Matsumi T., Deng T., Sako I., Sumi S.;
RT   "Differentiation of Allium carlaviruses isolated from different parts of
RT   the world based on the viral coat protein sequence";
RL   Arch. Virol. 143(6):1093-1107(1998).
XX
DR   MD5; d5656e620ef45af73e7da5612ce4c19c.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1032
FT                   /organism="Shallot latent virus"
FT                   /mol_type="genomic RNA"
FT                   /isolation_source="shallot"
FT                   /clone="SI-4C2"
FT                   /db_xref="taxon:12172"
FT   CDS             111..1004
FT                   /codon_start=1
FT                   /transl_table=1
FT                   /gene="CP"
FT                   /product="coat protein"
FT                   /db_xref="GOA:O70729"
FT                   /db_xref="InterPro:IPR000052"
FT                   /db_xref="InterPro:IPR013569"
FT                   /db_xref="UniProtKB/TrEMBL:O70729"
FT                   /protein_id="BAA25778.1"
FT                   /translation="MANEEEELSRLNNLPTRDPETVPEGERSKAVNDVGVMDREGFEAV
FT                   LRRSESRFNKLKEKCLAELSSINVTNCGWESGRPKAQLADSLKGDASNIFTRPSMDALL
FT                   VRNYAPESNNLATAEELAKISAKVQALGAPEECLAEVFWDICMYCTTAGSSPNVNPKGT
FT                   ISVGGKVVTRDMVVAVIKEYSTLRQVCRCYAPVVWNYMLLNEQPPANWDAKGFTENTKY
FT                   AAFDTFDAVTNKAAIQPLEGLIRAPTDAERIAFATHKKLALAKNSQNSRYANTSAEVTG
FT                   GFFGCFPKNNFRENRC"
XX
SQ   Sequence 1032 BP; 297 A; 218 C; 252 G; 265 T; 0 other;
     agaatcggtc aaatttcttg ggtgtgaatt cactagggat ttcatagatt ttgctataca        60
     agctaaacct tttggttcac tttaggttta cagcgctcta aattgatatt atggcaaacg       120
     aagaagaaga actcagcaga ttgaataatt tgcccactcg cgatccggag actgtacccg       180
     aaggggagcg cagtaaggct gttaatgatg ttggcgttat ggatcgtgaa ggcttcgagg       240
     ccgttcttcg taggagtgaa agtagattca acaaacttaa ggagaagtgc ttagcagaat       300
     tatctagcat aaatgtgacg aattgcggat gggaatctgg acgccccaaa gctcagctcg       360
     ccgatagtct taaaggggat gcttcgaata ttttcacccg tccctccatg gacgcacttt       420
     tggtacggaa ctacgcacct gaaagtaata atctggcgac cgctgaagaa ttagcaaaaa       480
     tttctgccaa agtgcaggct ctaggtgcgc cagaagagtg tcttgctgaa gtgttctggg       540
     acatttgcat gtattgcact acagccggga gttcgccaaa tgtgaaccct aaagggacca       600
     tctctgtcgg tggtaaggtg gtaactaggg acatggtggt agccgttatc aaggaatact       660
     caacactacg acaggtttgc cgctgttacg cgcccgtcgt ttggaattac atgttattga       720
     atgaacaacc gcctgctaat tgggacgcaa aggggttcac cgaaaacact aaatatgctg       780
     cttttgatac cttcgatgcg gtaactaaca aggctgcaat ccaaccgcta gaaggcctca       840
     taagggcccc gactgacgct gaacgcattg ctttcgcaac acacaagaag ctagctcttg       900
     cgaagaattc acaaaattct cgatacgcaa atacttctgc tgaggtcact ggaggattct       960
     ttggatgctt tcctaaaaac aactttagag agaatcgatg ttgatcaagc aaagaactta      1020
     ccgtagatta ct                                                          1032
//