ID AB004063; SV 1; linear; mRNA; STD; VRL; 6495 BP. XX AC AB004063; XX DT 07-JUL-2000 (Rel. 64, Created) DT 07-JUL-2000 (Rel. 64, Last updated, Version 1) XX DE Apple stem grooving virus genes for 241K polyprotein, 36K protein, complete DE cds. XX KW . XX OS Apple stem grooving virus OC Viruses; Riboviria; Tymovirales; Betaflexiviridae; Trivirinae; OC Capillovirus. XX RN [1] RP 1-6495 RA Yoshikawa N.; RT ; RL Submitted (20-MAY-1997) to the INSDC. RL Nobuyuki Yoshikawa, Iwate University, Faculty of Agriculture; Ueda 3-18-8, RL Morioka, 020 Japan, Morioka, Iwate 020, Japan RL (E-mail:yoshikawa@msv.cc.iwate-u.ac.jp, Tel:019-621-6150, Fax:019-621-6177) XX RN [2] RA Terauchi H., Magome H., Yoshikawa N., Takahashi T.; RT "Nucleotide sequence of the genome of apple stem grooving capillovirus i RT solate and construction of an infectious cDNA clone of the genome RT containing a c auliflower mosaic virus 35S RNA."; RL Nippon Shokubutsu Byori Gakkaiho 63:432-436(1997). XX DR MD5; c1adb5986340198d6ea12531cf1ebde6. DR EuropePMC; PMC6305176; 30588230. XX FH Key Location/Qualifiers FH FT source 1..6495 FT /organism="Apple stem grooving virus" FT /isolate="Li-23" FT /mol_type="mRNA" FT /db_xref="taxon:28347" FT CDS 36..6353 FT /codon_start=1 FT /gene="ORF1" FT /product="241K polyprotein" FT /note="contains two consensus sequences associated with FT RNA-dependent RNA polymerase and NTP-binding helicase" FT /db_xref="GOA:Q9IR74" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR008745" FT /db_xref="InterPro:IPR008879" FT /db_xref="InterPro:IPR027351" FT /db_xref="UniProtKB/TrEMBL:Q9IR74" FT /protein_id="BAA98054.1" FT /translation="MVFTYRNPLEIAINKLPSKQSDQLLSLTTDEIEKTLEVTNRFFSF FT SITPEDQELLTKHGLTLAPIGFRSHSHPISKMIENHLLYICIPGLLSSFRSVAFFSLRK FT NKVDNFLQMHSVFSHGKIKSLGMYNAIIDGKDKYRYGEVSFTSFRDRVIGLRNQCLTRN FT KFPKVLFLHDEFHFLSPFDMAFLFETIPEIDRVVATTVFPIELLFGDKVSKEPRVYTYK FT VHGSSFSFYPYGVASECYEQNLANSKWPFTCSGIQWANRKIRVTKLQSLFAHHVFSFDR FT GRACNEFNHFNKPSCLLADEMRLLTKRFDSAVINRSTVSSLSTYMACLKTANAASAVAK FT LRQLEKRDLYPDELNFVYSFGEHFKNFGMRDDFDVSVLQWVKDKFCQVMPHFIAASFFE FT PTEFHLNMRKLLNDLATKGIEVPLSVIILDNVNFIETRFHARMFDIAQAIGVNLNSLGR FT RFDHDTESEEYFSENGYVFMPSKLNPDMKWILNSGSLEIDYSRLIKARRFRLRRDFLDL FT ISRGDAPRRQLFLESTSDPKSNPEVHESDATGEAGSSVNDESCQSPKEFCAPMSTEDGQ FT GFEGSIPIDLMNCFEPEEVKCPRRKRKNDCVFRAISAHLGIETQDLLNFLVNEDISEEL FT LDCIDEDKGLSHEMIDEVLITKGLSMVYTSDFREMAVLNRKYGVNGKMYCTIKANHCEL FT SSKECFVRLLKEGGEAQMSNENLNADSMFDLGKFVHNRERAVKLAKSMARGTTGLLSSF FT DPAFCKSMVTLSELFPENFSSTVGLRLGFAGSGKTHKVLQWINYTPSVKRMFISPRRML FT ADEVEVQLKGTACQVHTWETALKKIDGTFMGVFIDEIGLYPPGYLTLLQMCALRKIVKG FT QSERILKGKLSELSKTCLNMRCFGDPLQLRYYSAEDTNLLDKTHELDILTKTIKHKYLL FT QGYRFGQWFQELINMPTRVDDSKFSRKFFADISSVKTEDYGLILVAKREDKGVFAGRIP FT VATVSESQGMTINKRVLICLDQNLFAGGANAAIVAITRSKVGFDFILKGNSLKEVQKMA FT QKTIWQFVIEAKSIPMERIVNMNPGASFYETPLDGGNSSIQDKASDDLFIMPLINLAEE FT EVDPEEVVGDVIQPVEWFKCHIPVFDTDPMLAEIFDKVAAKEKREFQSILGLSNQFLDM FT EKNGCKIDILPFARQNVFPHHQSSDDVTFWAGVQKRIRKSNWRREKTKFEEFESQGKEL FT LQEFISMLPFEFKVNIKDIEDGEKSFLEKRKLKSEKMWANHSERSDIDWKLDHAFLFMK FT SQYCTKEGKMFTEAKAGQTLACFQHIVLFRFGPMLRAIESAFLRSCGDSYYIHSGKNFF FT CLDSFVTRNAHVFDGFSIESDYTAFDSSQDHVILAFEMALLQYLGVSKEFQLDYLRLKL FT TLGCRLGSLAIMRFTGEFCTFLFNTFANMLFTQLKYKIDPRKHRILFAGDDMCSLSSLK FT RRRGERATRLMGSFSLTAVEEVRKFPMFCGWYLSPYGIIKSPKLLWARIKMMSERQLLK FT ECVDNYLFEAIFAYRLGERLYTILKEEDFEYHYLVIRFFVRNSKLLTGLSKSLIFEIGE FT GIGSEWRSSMSTISSRRSSQQTSRLTQSHPQNFTKMQPFSSQMCSIVSKDLSQMSKFPP FT GLGMDWSCQISSCLMTLKSTQSGKRATSTSTCITESFWLESKQCCQTSEVWKEGSLCMT FT EPVLIRKEAIYARICLSLSLTAVTSVLDLNTAYPPQMPTWRRDSDFVWTLTAHSMNRTL FT SCLLLTLVWPTDVLIQLVSWRPRLETQGGPRRLLVAVRHSDLMKKLKWQFWIISLHYFW FT RKVFQMFILKRGCSEVTRLEGHAQFLQKGGQTRNRRKREDLGPSQLELKDSEKMSLEDV FT LQQARRHRVGVYLWKTHIDPAKELLTVPPPEGFKEGESFEGKELYLLLCNHYCKYLFGN FT IAVFGSSDKTQFPAVGFDTPPVHYNLTTTPKEGETEEQKKAREGSSGEKTKIWRIDLSN FT VVPELKTFAATSRQNSLNECTFRKLCEPFADLAREFLHERWSKGLATNIYKKWPKAFEK FT SPWVAFDFATGLKMNRLTPDEKQVIDRMTKRLFRTEGQKGVFEAGSESNLELEG" FT CDS 4787..5749 FT /codon_start=1 FT /gene="ORF2" FT /product="36K protein" FT /note="movement protein" FT /db_xref="GOA:Q787R3" FT /db_xref="InterPro:IPR001815" FT /db_xref="InterPro:IPR028919" FT /db_xref="UniProtKB/TrEMBL:Q787R3" FT /protein_id="BAA98055.1" FT /translation="MAIVNVNHFLKEVESTDLKIDAISSSELYKDATFFKPDVLNCIKR FT FESNVKVSSRSGDGLVLSDFKLLDDTEIDSIRKKSNKYKYLHYGVILVGIKAMLPNFRG FT MEGRVIVYDGACLNPERGHICSYLFKFESDCCYFGLRPEHCLSTTDANLAKRFRFRVDF FT DCPQYEQDTELFALDIGVAYRCVNSARFLETKTGDSGWTSQAISGCEALRFNEEIKMAI FT LDHKSPLFLEEGVPNVHIEKRLFRGDKIRRSRSISAKRGPNSKPQEKRGFRSLSARIER FT FGENEFGRRASTSEAPPGRSVSLEDTYRPGKGTSDGSSP" XX SQ Sequence 6495 BP; 1939 A; 1234 C; 1502 G; 1820 T; 0 other; aaatttaaca ggcttaattt ccgcgctcta cgtcaatggt tttcacttac agaaatccgc 60 tagaaattgc aatcaacaaa cttccaagca agcaatctga tcaattgctt tccttgacca 120 cagacgagat tgaaaagacc ttagaagtga caaatcgctt cttctctttt tcaatcaccc 180 cagaagatca agaattgttg accaaacatg gtctaacact tgcgcctatc ggattcagat 240 cacattccca tccaatatcc aaaatgatag aaaatcatct cttgtacata tgtattcctg 300 gtcttctatc ttctttcagg tcagttgcct tcttctccct tagaaagaac aaagttgata 360 atttccttca aatgcattct gtattttcac acggaaaaat caaatctttg ggaatgtaca 420 atgcaataat tgacgggaag gacaagtata ggtatggtga ggtctctttc acctctttca 480 gagatagagt gataggtctt agaaatcaat gcctcacgcg taataaattt ccaaaggtgt 540 tattccttca tgacgaattc cactttctta gcccctttga tatggctttt ttatttgaaa 600 caattccaga aatagacaga gttgttgcaa ccacagtatt tccgattgaa ctgttatttg 660 gggacaaggt ctctaaggag cctagagttt atacctataa ggttcatgga tcttcctttt 720 cattttaccc ttacggtgta gcctctgaat gttatgaaca aaatttggca aattcgaaat 780 ggccttttac ctgtagtggc attcaatggg ccaataggaa gataagggtg accaagttgc 840 agagcttgtt tgctcaccat gttttttcat ttgacagagg cagggcctgc aatgaattta 900 accatttcaa taagccaagc tgcctgctcg cagatgaaat gcgtcttttg acaaaaaggt 960 tcgattctgc agtcatcaat cggagtacag tttcctctct cagcacttac atggcttgcc 1020 tcaaaactgc aaacgcagct tcagcagttg ctaaattgag acagttggag aagagagacc 1080 tctatccaga tgagctgaac tttgtttact ctttcgggga acatttcaag aattttggga 1140 tgagagatga ctttgacgtg tcagttctcc aatgggttaa agacaaattt tgtcaagtta 1200 tgcctcactt cattgctgct agtttctttg agccaacaga gtttcacctc aatatgcgaa 1260 aattattaaa tgacctggcc actaagggga tagaggttcc actatccgtc attatcctag 1320 acaatgtcaa ttttattgaa accaggttcc atgccaggat gtttgacata gcgcaggcta 1380 ttggggttaa cttgaactca cttgggcgca gatttgacca cgatactgaa agtgaggaat 1440 atttttcaga aaatggctat gtcttcatgc cttccaaatt gaatccagac atgaagtgga 1500 ttctgaactc tggctcttta gagattgact actctagatt gatcaaggcc aggagattca 1560 gattaaggag agattttctg gatctcatat ctagaggtga tgctcccagg aggcaactct 1620 tcttagaatc aaccagtgac cccaagtcaa atcccgaggt ccacgagagt gatgcaactg 1680 gagaggcagg gtcatcagta aatgacgaga gctgccagtc gccaaaggag ttttgtgcgc 1740 caatgtccac agaggacggc caaggtttcg aaggctcaat cccgattgat ttaatgaatt 1800 gctttgaacc ggaagaagtt aaatgcccaa gaaggaagag gaagaatgat tgcgttttta 1860 gggccatttc tgcacacttg ggaattgaaa cccaagactt gttgaatttc ctcgttaatg 1920 aggacatatc tgaagaacta ttggactgca ttgatgaaga caaagggctc tcacatgaaa 1980 tgattgacga agtattaatc acgaaaggtc tatctatggt ttatacttca gacttcagag 2040 agatggcagt ccttaacaga aaatatggtg tgaatggtaa aatgtactgc accatcaaag 2100 ccaaccactg tgaattgagc tcaaaagaat gttttgtcag actgttaaag gaaggtggag 2160 aagctcaaat gtcaaatgaa aacttgaatg ccgactccat gtttgacctt gggaaatttg 2220 tgcataacag ggagagagcc gttaaattag caaaatcaat ggcgagaggt accacaggtc 2280 ttttgagttc ctttgatccc gccttctgca agagcatggt cactctttca gagttgtttc 2340 ctgagaactt ttcatctact gttgggctaa gattgggatt tgctggttca ggaaagaccc 2400 acaaagtgct ccaatggatc aactacacac caagtgtcaa aagaatgttc ataagtccaa 2460 gaaggatgct agctgatgaa gttgaggtcc agcttaaagg gacagcctgt caagtgcaca 2520 cttgggagac cgctttgaag aagattgatg gaaccttcat gggggttttt attgatgaaa 2580 taggtttgta cccacctgga tacctcacat tgttacaaat gtgtgcttta agaaagattg 2640 tcaaaggaca gagtgagagg atcttgaaag gtaaactcag tgaactgtca aaaacttgtc 2700 tgaacatgag gtgttttggt gacccattac aattgagata ctactctgct gaggacacaa 2760 atcttctaga caaaacacat gagctcgaca ttttgactaa gacaatcaag cacaaatacc 2820 ttcttcaggg gtacagattt ggccaatggt ttcaagaact cataaacatg ccaaccaggg 2880 tggatgactc aaagttctca agaaagttct ttgcggacat ctccagtgtc aagactgaag 2940 attacgggct cattcttgtt gccaaaaggg aggacaaagg tgtttttgct gggaggatcc 3000 cagtggccac agttagcgag tctcaaggga tgacaataaa caaaagagta ttgatatgtc 3060 tggatcaaaa cctctttgct ggaggggcca atgctgcgat tgttgcaatc acaaggtcga 3120 aagttgggtt tgactttatc ctcaagggga actcactgaa ggaagtgcag aagatggccc 3180 aaaaaaccat ttggcaattc gttattgagg ccaaatctat cccaatggag agaatagtca 3240 acatgaatcc tggagccagc ttctatgaaa ccccgttgga cggtggaaat tcgtctattc 3300 aagacaaagc ttctgatgat ttgtttataa tgcctttaat aaatttggct gaggaagagg 3360 ttgacccaga ggaagttgtt ggggacgtga tacagcctgt tgaatggttt aaatgccaca 3420 tacctgtctt tgatacagat ccaatgctag cagagatatt cgataaagtg gccgcaaaag 3480 aaaagagaga gtttcaatct atattaggtc tctcaaatca atttttggac atggaaaaga 3540 acgggtgcaa aattgacata cttccttttg ctaggcaaaa tgtttttcct catcatcagt 3600 cctcagatga tgtcactttt tgggcaggtg ttcaaaagag gataaggaag tccaattgga 3660 ggcgtgaaaa aacaaaattt gaagaatttg agagtcaggg gaaagaactg ctccaagagt 3720 ttatttcgat gttgcccttt gaattcaagg ttaacattaa agacattgaa gatggagaaa 3780 aaagcttcct agaaaaaagg aaattgaagt cagaaaaaat gtgggcgaat cattcagaaa 3840 ggtctgacat cgactggaag cttgaccatg ccttcctctt tatgaaatca cagtattgca 3900 cgaaggaagg gaagatgttc accgaggcga aagccggcca aactttggcc tgcttccagc 3960 atattgtctt gttcagattc ggacccatgc tcagagcaat tgagagcgcc tttttaagga 4020 gctgtgggga ttcatactac atacactccg gaaaaaactt tttctgccta gacagctttg 4080 taacgagaaa tgcacatgtt tttgatggat tttcaataga gtccgactac actgctttcg 4140 attcatccca ggaccacgtc attttggcct tcgagatggc actattgcaa tatttgggtg 4200 tatccaaaga atttcagctt gactatctga ggttgaagtt gactcttggt tgtcgacttg 4260 ggtcattagc aataatgaga ttcaccgggg aattttgcac ctttctgttc aacacatttg 4320 ccaacatgct tttcactcag ttgaagtaca agatagaccc acggaaacat aggatcttat 4380 tcgcagggga tgacatgtgc tccctgagct ctctcaagag gagaagagga gaaagagcaa 4440 caaggttgat ggggagcttt tccctaactg cggtggagga agtgaggaaa ttccctatgt 4500 tctgtggatg gtatttgagt ccatatggaa ttatcaaatc tccaaaattg ttatgggcca 4560 ggattaagat gatgagtgaa agacagctcc tgaaagaatg cgttgacaac tatctgtttg 4620 aggcaatatt tgcctacagg ttaggtgaga ggctgtacac aattttgaaa gaagaagact 4680 tcgaatatca ttatcttgtt ataagattct ttgtcaggaa ttcaaagctg ctaacgggtt 4740 taagcaagag cttgattttc gaaattggag aaggaattgg gtctgaatgg cgatcgtcaa 4800 tgtcaaccat ttcctcaagg aggtcgagtc aacagacctc aagattgacg caatctcatc 4860 ctcagaactt tacaaagatg caaccttttt caagccagat gtgctcaatt gtatcaaaag 4920 atttgagtca aatgtcaaag tttcctccag gtctggggat ggactggtct tgtcagattt 4980 caagttgctt gatgacactg aaatcgactc aatcaggaaa aagagcaaca agtacaagta 5040 cttgcattac ggagtcattc tggttggaat caaagcaatg ctgccaaact tcagaggtat 5100 ggaaggaagg gtcattgtgt atgacggagc ctgtcttaat ccggaaagag gccatatatg 5160 ctcgtatttg tttaagtttg agtctgactg ctgttacttc ggtcttagac ctgaacactg 5220 cttatccacc acagatgcca acctggcgaa gagattcaga tttcgtgtgg actttgactg 5280 cccacagtat gaacaggaca ctgagttgtt tgctcttgac attggtgtgg cctacagatg 5340 tgttaattca gctcgtttct tggagaccaa gactggagac tcagggtgga cctcgcaggc 5400 tattagtggc tgtgaggcac tcagatttaa tgaagaaatt aaaatggcaa ttttggatca 5460 taagtctcca ctatttctgg aggaaggtgt tccaaatgtt catattgaaa agaggctgtt 5520 cagaggtgac aagattagaa ggtcacgctc aatttctgca aaaagggggc caaactcgaa 5580 accgcaggaa aagagaggat ttaggtccct ctcagctaga attgaaagat tcggagaaaa 5640 tgagtttgga agacgtgctt caacaagcga ggcgccaccg ggtaggagtg tatctttgga 5700 agacacatat agacccggca aaggaacttc tgacggttcc tccccctgaa gggtttaagg 5760 aaggtgaaag ctttgaaggc aaggagcttt accttcttct ttgcaaccat tattgtaaat 5820 acttatttgg taatattgct gtttttgggt catctgataa gacccagttt cctgctgttg 5880 gatttgatac ccctccggtt cattacaatt tgacaacgac cccaaaagaa ggggaaactg 5940 aagagcaaaa gaaggccaga gagggttcgt ctggcgaaaa aacaaaaatt tggagaatcg 6000 acttgtcaaa tgttgtacct gaattgaaaa cctttgctgc cacttctagg cagaactctt 6060 tgaatgaatg tacattcaga aagctttgtg agccattcgc tgatttggcc cgtgagtttc 6120 ttcatgaaag gtggtcaaaa ggattggcca ctaacattta taagaaatgg cccaaagctt 6180 ttgaaaaaag cccttgggtg gcatttgatt ttgccaccgg tctaaaaatg aatcgtttaa 6240 cacctgatga gaaacaggtg atcgacagga tgaccaaaag gctttttcgt actgaaggac 6300 aaaaaggggt tttcgaggca ggttcggaga gtaatctgga actggagggt taggagtcgt 6360 gtgaaattcc gcaaatttgg tcgcggtctt gcaggttgac atgcctgcct ttatacttaa 6420 ataaagggtt cacccggttt tctgtgcatt tccgggttag tgtggttttt ctagagtcta 6480 gagtttgtcc actct 6495 //