Dbfetch

Dbfetch

ID   FR878080; SV 1; linear; genomic RNA; STD; VRL; 640 BP.
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AC   FR878080;
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DT   06-JUL-2011 (Rel. 109, Created)
DT   06-JUL-2011 (Rel. 109, Last updated, Version 1)
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DE   Apple mosaic virus partial pol gene for polymerase, segment RNA 2, genomic
DE   RNA, isolate Apple Shimla 5
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KW   .
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OS   Apple mosaic virus
OC   Viruses; Riboviria; Bromoviridae; Ilarvirus.
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RN   [1]
RP   1-640
RA   Lakshmi V.;
RT   ;
RL   Submitted (24-JUN-2011) to the INSDC.
RL   Technology (CSIR), Plant Virology, Institute of Himalayan Bioresource, PO
RL   Box no-6, Himachal Pradesh-176061, INDIA.
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RN   [2]
RA   Lakshmi V., Hallan V., Verma R.R., Zaidi A.A.;
RT   "RNA 2 partial putative polymerase gene of Apple mosaic virus (1351-1990)";
RL   Unpublished.
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DR   MD5; 25600ebe5ec901724185e90f5ce6c2f0.
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FH   Key             Location/Qualifiers
FH
FT   source          1..640
FT                   /organism="Apple mosaic virus"
FT                   /segment="RNA 2"
FT                   /host="Malus x domestica"
FT                   /isolate="Apple Shimla 5"
FT                   /mol_type="genomic RNA"
FT                   /country="India:Himachal Pradesh, Shimla"
FT                   /isolation_source="host leaves"
FT                   /collection_date="15-Sep-2010"
FT                   /db_xref="taxon:12319"
FT   CDS             <1..>639
FT                   /codon_start=1
FT                   /transl_table=1
FT                   /gene="pol"
FT                   /product="polymerase"
FT                   /function="replication"
FT                   /db_xref="GOA:F8MAG7"
FT                   /db_xref="InterPro:IPR001788"
FT                   /db_xref="UniProtKB/TrEMBL:F8MAG7"
FT                   /protein_id="CCC33055.1"
FT                   /translation="QQVLFEDDEARKIANRFINTVIDPNKLAQFPGYISEGEMGYFNKY
FT                   LSGKNIPEDAFVDPCALVSMDKYRHMIKTQLKPVEDCSQIFERPLASPITYHDKGKVMS
FT                   TSPILVMMCNRLLLCLTEKISIPTGNISLFSLDPFASEMTKEFKEIDPSTFDKSQQRLH
FT                   HLTHYHTPTALGAPADFIDMWFGSHEISHIRDGPCGVGFSVNYQPRTGDA"
XX
SQ   Sequence 640 BP; 177 A; 130 C; 148 G; 185 T; 0 other;
     cagcaggttt tattcgagga tgatgaggct aggaagattg cgaatcgttt cattaacaca        60
     gttattgatc cgaataaact agcgcaattc cccggttaca tttcagaagg agagatgggt       120
     tactttaata agtatctttc cgggaagaat ataccagagg atgcttttgt ggatccatgt       180
     gctttggtgt cgatggacaa gtatcgacat atgatcaaaa ctcaattgaa accagttgag       240
     gattgttcgc agatatttga gagacctttg gcttcaccga ttacatatca tgataaaggt       300
     aaagtaatgt ctacttcacc cattttggtc atgatgtgta ataggctact gctgtgtttg       360
     actgagaaga tatcaattcc gacaggaaat atctcattat tctcattgga tccctttgct       420
     tccgagatga cgaaagagtt taaagagata gacccctcga cattcgataa gtcacagcag       480
     aggttgcatc acttgactca ctatcacacc cccacagctc ttggcgcgcc tgccgacttc       540
     attgacatgt ggtttggctc acacgagata tcgcatatca gggacggacc ctgcggtgtc       600
     gggtttagtg tgaattatca gcctcgaact ggagacgctt                             640
//