ID Z97873; SV 1; linear; genomic RNA; STD; VRL; 5834 BP. XX AC Z97873; XX DT 16-JAN-1998 (Rel. 54, Created) DT 24-AUG-2005 (Rel. 84, Last updated, Version 2) XX DE Beet soil-borne virus RNA1 for 145 kDa protein, and 204 kDa protein. XX KW 145 kDa protein; 204 kDa protein. XX OS Beet soil-borne virus OC Viruses; Riboviria; Virgaviridae; Pomovirus. XX RN [1] RX PUBMED; 9400965. RA Koenig R., Loss S.; RT "Beet soil-borne virus RNA 1: genetic analysis enabled by a starting RT sequence generated with primers to highly conserved helicase-encoding RT domains"; RL J. Gen. Virol. 78:3161-3165(1997). XX RN [2] RC Revised by author 28-JUL-97 RP 1-5834 RA Koenig R.; RT ; RL Submitted (17-JUL-1997) to the INSDC. RL Koenig R., Biologische Bundesanstalt fuer Land- und Forstwirtschaft, RL Institut Biochemie u. Pflanzenvirologie, Messeweg 11, Braunschweig, D38104, RL Germany. XX DR MD5; 070d9f971ef0331088ea299309a0280c. DR RFAM; RF00233; Tymo_tRNA-like. DR RFAM; RF01072; TMV_UPD-PK3. XX FH Key Location/Qualifiers FH FT source 1..5834 FT /organism="Beet soil-borne virus" FT /strain="Ahlum" FT /mol_type="genomic RNA" FT /db_xref="taxon:46436" FT 5'UTR 1..129 FT CDS 130..3942 FT /product="145 kDa protein" FT /function="putative virus replication" FT /db_xref="GOA:O93163" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR013664" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:O93163" FT /protein_id="CAB10763.1" FT /translation="MESTNILTQINRDDIIQAVLTTSASRTQSALHETLSRVIDDNIKN FT ALKANTKKKTVDVKRNLSEEQVQYLCELYPERKIITSNSERGTHSMAAAMRKIETDLVL FT SLFPKNSVIYDIGGNWATHAKCNDGRKVHCCCPILDYRDAQRKMTRMLNFHKFTSDSSE FT IPPDIREKAEMIAEDNAIITANVREGDLNSSALNGRWFCQNKFEDCVFDPRDILTGKTA FT KDNVMVYAMAIHSIYDINVYELATALQRKGIKRMVGTFLFSVDMLLGRKSGELPSVNGF FT YKLEGEYIKYGFYDDPNCGYRHKFSSLKAYLTKTFVKAANGSVFYLELTDLRGDVMYFT FT MTDATEARASGIMKDESFKCIPVDAKNKVVFPLFVVDETTDTLMFLERVLPKDFVHRAI FT EYVNRCKENQLTVESIVSYLSSTNNAVIIGGSARKVEEKVDPSLLPMIASTLLVYSEMQ FT RAKQKTVIQKLRIHVKNTVTIGDLLNHAFHKVFGAVGVGQLALQSFARWLKFFHGSGVI FT EMNDLFMYVEIEDRIRLWSKKSREHEFFLTFDDLTEKSRLYEEYNEERRRISDKIIKEK FT GLSSKDLSLEEDKEKTVDEILAWMEKSEDLKASELRSKLIGIRKNRARVDKRKFGEAHQ FT VNTAVLQRFTEADDDHFSTCALNTPGKWWVDVLGEFLGKTLSEVCATNIVFSDIEPNDN FT TEGFDTVEYADRDDMASDVETSISQCVESNDECVDEDGYSCDGDSKVEHSTLNSNYGAL FT TPPPREEVKDSEEGVDVTVEDVSTDIIESHCDGRWALMAEDSDFAIDQKRSEALNIMEV FT GYAKLPSKPDYLESDDFRMRAKKEFIWYLECKLVSDKSAMTDIVRDYVYNMYHNSLCEF FT PKNSCFLSYEGDDNGSWAWGRKPVRLGHAYAVHFYAADWKTNCRLVSLSWNKDEEGNFV FT GDKPVISTNSGVYMLCDLTFLMNEMIILENLQFSLKTRFQKHIPHVTLIDGVPGCGKST FT HIVKEARLENQYVLTMGREAAAELRERFKTVRGSTEEQLKRVRTVDSFLMNDKDSRAKI FT LHFDEALMAHAGMVYFCADNLSARTIICQGDSQQIPFINRVESITLEYAKLEITNVVEK FT RLTYRSPLDVACFLTRKNFYWHFHCYERKSNGRSISVVGPRDGMTSNYSIPKKKGAQYL FT TFTQSEKEDMVRYLGKGQWSVNTVHESQGKTYDDVILVRLKPTDNEIYPGGRKSKPYVV FT VGTTRHRRSLVYYTRAEDILYRDITEMMSVQEGKLHKHLFTESTQ" FT CDS 130..5466 FT /transl_except=(pos:3940..3942,aa:OTHER) FT /product="204 kDa protein" FT /function="putative virus replication" FT /note="putative readthrough protein" FT /db_xref="GOA:O56790" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR013664" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:O56790" FT /protein_id="CAB10764.1" FT /translation="MESTNILTQINRDDIIQAVLTTSASRTQSALHETLSRVIDDNIKN FT ALKANTKKKTVDVKRNLSEEQVQYLCELYPERKIITSNSERGTHSMAAAMRKIETDLVL FT SLFPKNSVIYDIGGNWATHAKCNDGRKVHCCCPILDYRDAQRKMTRMLNFHKFTSDSSE FT IPPDIREKAEMIAEDNAIITANVREGDLNSSALNGRWFCQNKFEDCVFDPRDILTGKTA FT KDNVMVYAMAIHSIYDINVYELATALQRKGIKRMVGTFLFSVDMLLGRKSGELPSVNGF FT YKLEGEYIKYGFYDDPNCGYRHKFSSLKAYLTKTFVKAANGSVFYLELTDLRGDVMYFT FT MTDATEARASGIMKDESFKCIPVDAKNKVVFPLFVVDETTDTLMFLERVLPKDFVHRAI FT EYVNRCKENQLTVESIVSYLSSTNNAVIIGGSARKVEEKVDPSLLPMIASTLLVYSEMQ FT RAKQKTVIQKLRIHVKNTVTIGDLLNHAFHKVFGAVGVGQLALQSFARWLKFFHGSGVI FT EMNDLFMYVEIEDRIRLWSKKSREHEFFLTFDDLTEKSRLYEEYNEERRRISDKIIKEK FT GLSSKDLSLEEDKEKTVDEILAWMEKSEDLKASELRSKLIGIRKNRARVDKRKFGEAHQ FT VNTAVLQRFTEADDDHFSTCALNTPGKWWVDVLGEFLGKTLSEVCATNIVFSDIEPNDN FT TEGFDTVEYADRDDMASDVETSISQCVESNDECVDEDGYSCDGDSKVEHSTLNSNYGAL FT TPPPREEVKDSEEGVDVTVEDVSTDIIESHCDGRWALMAEDSDFAIDQKRSEALNIMEV FT GYAKLPSKPDYLESDDFRMRAKKEFIWYLECKLVSDKSAMTDIVRDYVYNMYHNSLCEF FT PKNSCFLSYEGDDNGSWAWGRKPVRLGHAYAVHFYAADWKTNCRLVSLSWNKDEEGNFV FT GDKPVISTNSGVYMLCDLTFLMNEMIILENLQFSLKTRFQKHIPHVTLIDGVPGCGKST FT HIVKEARLENQYVLTMGREAAAELRERFKTVRGSTEEQLKRVRTVDSFLMNDKDSRAKI FT LHFDEALMAHAGMVYFCADNLSARTIICQGDSQQIPFINRVESITLEYAKLEITNVVEK FT RLTYRSPLDVACFLTRKNFYWHFHCYERKSNGRSISVVGPRDGMTSNYSIPKKKGAQYL FT TFTQSEKEDMVRYLGKGQWSVNTVHESQGKTYDDVILVRLKPTDNEIYPGGRKSKPYVV FT VGTTRHRRSLVYYTRAEDILYRDITEMMSVQEGKLHKHLFTESTQXRCGSKYESITVSD FT RPVSVPDVGAVEDLQVMYDIAFPGNSVIETYFDGYDVATGGLEIDIANIKYYPNKQKRM FT WQEVRGLTPALRTAMPEKRQSGLIESVLALNKRNMAAPRLQESVNEFEIIENVISKAKA FT VFFDEKFIDASPMNSVSNCQKWWDKQSVTAQKQMLADTRIISEIDLCTYNFMIKNDVKP FT KLDLSPQSEYSALQTVVYPDKIVNAIFGPVMKEINERILLALRPHVVYNTRMTAEELDR FT SVEFLDVREQYDAVEIDFSKFDKSKTSLHIRAVIELYKIFGLDDMLAFLWEKSQCQTTI FT RDRQNGLIAHILYQQKSGNCDTYGSNTWSAALALLDALPLERAKFMVFGGDDSLVFFPK FT NMNLADPCGRLASLWNFDCKFFNFQNNMFCGKFLLKIGENYKFAPDPFKLLTKLGRKDI FT KNDILLSEIFISISDNYRSYHDYRVLEALNVAVVERYKLSQDVLFGLCALKKYLFNFDL FT FRTLFSYKGKLHCTNVSRNFDW" FT misc_feature 3940..3942 FT /note="leaky stop codon (taa)" FT 3'UTR 5464..5834 FT /note="The 3'UTR has the potential to fold into a FT t-RNA-like structure with a GAC anticodon for valine" XX SQ Sequence 5834 BP; 1717 A; 930 C; 1365 G; 1822 T; 0 other; gtattatttt ctcaacggtt atttaccaaa gagaagattt ctataccatt aattttgaaa 60 agtctgcttt ttagcaataa atcttttcat attactggtt tgtcttttta tttttacgaa 120 aattctacga tggaatctac aaacattctg acgcaaatta atcgtgatga tataattcag 180 gccgtattaa ctacaagtgc gagtaggact cagtctgctt tacatgaaac tttgagtagg 240 gtgattgatg ataatataaa gaatgctctt aaagctaaca caaaaaagaa aacagttgat 300 gtgaaacgaa acttgtctga agaacaggtt cagtatttat gtgagcttta tcctgaaaga 360 aaaataatta catctaattc tgaacgtggt actcatagta tggctgcggc tatgcgaaaa 420 attgaaacgg atttggtttt gtcactgttt cctaagaata gcgttatata tgatattggt 480 ggtaattggg cgacgcacgc taagtgtaat gatggaagga aagtgcattg ttgctgtccg 540 atattggact atcgtgatgc gcagaggaag atgacgcgga tgttaaactt tcataagttt 600 accagcgatt cttctgagat acctcctgat atcagagaaa aagcggagat gatagccgag 660 gataacgcca ttataactgc aaatgtgcgg gaaggtgatc tgaattcttc tgctttgaac 720 ggacgttggt tttgccaaaa caagtttgaa gactgtgttt ttgatccgcg tgacattttg 780 acgggtaaga ctgctaagga taatgtaatg gtttatgcca tggcaattca cagtatttat 840 gatataaatg tttatgaatt ggctacggcg ttacagcgaa aaggaataaa gcggatggta 900 ggtacttttc tgttttctgt ggacatgttg ctcggaagaa aaagtggtga attgccatct 960 gttaacgggt tttataagtt ggaaggcgaa tatataaaat acgggtttta cgacgatcca 1020 aattgcggtt acagacataa gttttcttcg ctcaaggctt acttgacaaa aacttttgtt 1080 aaagcagcaa atggttccgt gttttacctg gagttaactg acttaagggg tgacgtaatg 1140 tactttacta tgacagatgc tacagaggca cgggcttccg gtattatgaa agatgagtca 1200 tttaagtgca ttccagtgga cgcaaaaaac aaggtagttt ttcctttgtt tgttgtggat 1260 gaaaccactg acacacttat gtttctcgaa cgcgtattac caaaagattt tgtgcatcgc 1320 gctattgagt atgtcaatcg ttgtaaggag aatcagttaa cggttgaaag tattgttagt 1380 tatttatcgt ctactaataa tgccgtgata attggtgggt ctgcgagaaa agtggaagag 1440 aaggtggatc cttctttgct accgatgatc gcctccactt tgttagttta cagtgaaatg 1500 cagagggcta aacagaagac tgttattcaa aagctgagaa ttcatgtgaa gaatacagtt 1560 actattggtg atttgttgaa ccacgctttc cataaggtgt tcggcgccgt tggtgtcggt 1620 cagttggcgc tgcagagctt tgctagatgg ttaaagtttt ttcatggctc aggggttatc 1680 gagatgaatg acctttttat gtacgtagag attgaagacc gtattaggtt atggtctaag 1740 aaatctcgag agcacgaatt cttcctgacc tttgatgatc tgacagaaaa aagtcgtttg 1800 tacgaagagt acaacgaaga gagacgtagg atttctgaca agatcattaa ggaaaaaggt 1860 ttgagttcta aagacctttc tttggaagaa gataaggaaa agacggtaga tgaaattctg 1920 gcctggatgg agaaatctga agatttgaag gcttcggagt tgcgttctaa gttgataggg 1980 attcgaaaga atcgtgcacg tgttgataaa cgaaagtttg gtgaggcgca tcaggtaaat 2040 acggctgtat tgcagaggtt taccgaggcg gacgacgatc acttttccac gtgtgcttta 2100 aatactccag gcaagtggtg ggttgatgtt ctgggtgaat ttttaggaaa aacattatcg 2160 gaggtttgtg ctactaatat tgttttttct gatatagaac ccaatgataa cactgaaggt 2220 tttgatactg ttgaatatgc tgatagagac gatatggcta gcgatgtcga aacgtcgatt 2280 agtcagtgcg ttgagtccaa cgatgagtgt gtggacgaag atggttacag ttgcgacggt 2340 gattccaaag tcgagcattc tactttaaac agtaattatg gtgcgttgac gccacctcct 2400 agagaagagg taaaagattc agaggagggc gttgatgtga cagttgaaga cgtatctacg 2460 gatataattg agtcgcattg tgatggaaga tgggcattga tggcggaaga ttctgatttc 2520 gccattgacc agaagcgatc cgaggcacta aatattatgg aagttggata tgctaaatta 2580 ccgtctaaac cagattactt agaaagtgat gattttagaa tgcgggcaaa gaaagagttt 2640 atctggtact tagaatgtaa gttggtttca gataagtctg cgatgactga tattgtgcga 2700 gattatgttt ataacatgta ccataacagt ctttgcgagt ttccgaaaaa ttcttgcttt 2760 ctaagttacg aaggtgatga caacggtagt tgggcttggg gcaggaaacc ggttaggttg 2820 ggccacgctt acgctgttca cttttatgcc gctgattgga agactaactg tcgacttgta 2880 agtttgtcat ggaacaaaga cgaggaagga aatttcgttg gcgataagcc cgttatttct 2940 actaattccg gagtttacat gctatgcgat ttgacatttc taatgaatga aatgatcatt 3000 ttggaaaatt tgcagttttc gttaaagacc aggtttcaga agcatattcc acacgttaca 3060 cttattgatg gtgtacctgg gtgtggtaaa tcaactcata ttgttaaaga agctagactg 3120 gaaaaccagt acgtactcac tatgggtcga gaagcagctg cagagttgcg agagcgattt 3180 aaaactgtac gcggttcgac cgaagaacag ttgaaaagag tgcggactgt tgattctttt 3240 ttgatgaacg ataaggactc tagggccaaa attttgcatt tcgacgaggc attgatggcg 3300 catgctggta tggtttactt ttgtgcagat aatttgtctg ctaggacaat tatttgtcaa 3360 ggtgattctc agcagatacc atttattaac cgcgttgaat ccataacttt ggaatacgct 3420 aagttggaaa taactaacgt ggtggagaaa agacttacct atcgttcccc tttggacgtt 3480 gcctgttttt tgacaagaaa aaatttttat tggcacttcc actgttatga gcgcaaatcc 3540 aacggacgtt ctataagcgt tgttggtccc cgagatggca tgacgtctaa ctacagtatt 3600 cctaagaaga aaggtgctca atacctcact tttactcaaa gtgagaagga agacatggtt 3660 cgttacctgg gtaagggaca gtggtctgta aacactgtac atgaaagtca aggaaaaact 3720 tacgatgatg ttatattagt taggttgaag cccactgata atgaaattta tcctggtggg 3780 cggaaatcaa aaccttacgt cgtagttggt actacgcggc atagacgcag tttagtgtac 3840 tacacacgtg ctgaggacat tctgtacaga gatataactg aaatgatgag tgtgcaagaa 3900 ggaaaattgc acaaacattt gttcacggag agtactcaat aacggtgtgg gtcgaagtac 3960 gagtcgataa ccgtttccga tcgtccggta agtgttcctg acgttggagc cgttgaagat 4020 ttgcaggtta tgtatgacat tgcttttcct ggcaattcgg ttattgagac gtatttcgac 4080 gggtacgatg ttgctacggg aggtttagaa atagatattg ctaatataaa atattatccc 4140 aacaagcaaa agcgaatgtg gcaagaagtt cgtggactta cacctgcttt gcgaactgct 4200 atgccggaga aaaggcagag cggtttgata gagagcgttc tggcgcttaa caagagaaat 4260 atggctgctc ctaggttaca agaatcggtt aacgaattcg agattattga aaatgtcatt 4320 tctaaggcta aggctgtttt cttcgatgag aaattcatcg atgcatctcc gatgaactcc 4380 gtatcaaatt gtcaaaaatg gtgggataaa cagtcggtta ccgcgcagaa acagatgttg 4440 gcggatacta gaattatatc cgaaattgac ttgtgcacat ataacttcat gattaaaaat 4500 gatgttaagc ctaagttgga tttgtcgcca caatcggaat attctgcatt acaaacagtt 4560 gtctatccag ataaaattgt taatgctatt ttcggtcctg tgatgaagga gataaacgaa 4620 agaatattgt tagcgttgcg gcctcatgtt gtgtataaca caaggatgac agccgaagaa 4680 ctagataggt ccgttgaatt tctcgacgtt cgcgaacaat acgacgctgt tgagattgat 4740 ttttctaaat ttgataaatc aaaaacttct ttacacatta gggcagtgat agaattatac 4800 aagatttttg gccttgacga tatgttagct ttcttatggg agaagtcaca gtgtcagact 4860 acgattcgtg atcgtcagaa tggactaatt gcgcatatac tttatcaaca aaaatctggt 4920 aactgtgata catatggttc taatacttgg tcggctgctc ttgctctttt ggatgcgtta 4980 ccacttgaac gagctaagtt catggtattt ggcggtgatg attctcttgt gtttttccca 5040 aaaaatatga atttagctga cccttgtggt aggttggctt ctctttggaa tttcgattgt 5100 aaatttttca actttcaaaa caacatgttt tgtggtaagt ttcttttaaa aattggagaa 5160 aattataagt ttgctccgga tccttttaaa ttgcttacaa aacttggtag gaaagatatc 5220 aaaaatgata ttttgcttag tgaaattttt atttctataa gcgataatta ccgttcttat 5280 catgactaca gagttttaga agctttaaac gtggcggtcg ttgaacgtta taaattgtct 5340 caagacgttt tgtttggttt gtgtgcttta aaaaaatact tgtttaactt tgatttattc 5400 cgcacacttt tctcttataa aggcaaatta cactgcacta acgtgagtag aaattttgat 5460 tggtaaaatt tccttggttc tccgttttgt gagtttaaga tcattatttt gtgtaatttg 5520 gtgtggagag atacagtcta tttgtacttg taaatgatta tttgagctga tcactcaacg 5580 tggatttcac gatagaaatc ggtgtttttc attccaccta aatcgaaatg tactacggta 5640 gcgcgaacct tatcgcgcag tgttttgaag tccacttaaa tagaacttct ttccacggtc 5700 tctttcgcta ctgaattaat tataaaaact tcagtattcg atttatgcag atgagagtag 5760 tatctctcga tcatcaagac acgatgattc tgtggggtgc aaatcccccc ctttacttga 5820 gggaaatcaa gccc 5834 //