ID Z36974; SV 2; linear; genomic RNA; STD; VRL; 3855 BP. XX AC Z36974; XX DT 07-SEP-1994 (Rel. 40, Created) DT 21-OCT-2003 (Rel. 77, Last updated, Version 12) XX DE Tobacco rattle virus genes for coat protein, 28.7 kDa & 32.8 kDa proteins, DE genomic RNA XX KW 28.7 kDa protein; 32.8 kDa protein; coat protein. XX OS Tobacco rattle virus OC Viruses; Riboviria; Virgaviridae; Tobravirus. XX RN [1] RP 1-3855 RX PUBMED; 7595393. RA Hernandez C., Mathis A., Brown D.J.F., Bol J.F.; RT "Sequence of RNA 2 of a nematode-transmissible isolate of tobacco rattle RT virus"; RL J. Gen. Virol. 76:2847-2851(1995). XX RN [2] RC revised by [4] RA Hernandez C.; RT ; RL Submitted (03-SEP-1994) to the INSDC. RL Hernandez C., Institute of Mol. Plant Sciences, Einsteinweg 55, 2300 RA RL Leiden, The Netherlands XX RN [3] RA Hernandez C.; RT ; RL Submitted (02-MAR-1995) to the INSDC. RL Hernandez C., Institute of Mol. Plant Sciences, Einsteinweg 55, 2300 RA RL Leiden, The Netherlands XX RN [4] RP 1-3855 RA Hernandez C.; RT ; RL Submitted (05-MAY-1999) to the INSDC. RL Hernandez C., Institute of Mol. Plant Sciences, Einsteinweg 55, 2300 RA RL Leiden, The Netherlands XX DR MD5; 60666562e7c1375cd66db666ddf1e09a. DR EuropePMC; PMC434121; 15220402. DR RFAM; RF01101; TLS-PK6. XX FH Key Location/Qualifiers FH FT source 1..3855 FT /organism="Tobacco rattle virus" FT /segment="RNA2" FT /isolate="PPK20" FT /mol_type="genomic RNA" FT /clone="pK20" FT /db_xref="taxon:12295" FT CDS 557..1171 FT /standard_name="coat protein" FT /product="22.3K" FT /function="coat protein" FT /note="High homology with other tobraviral coat proteins" FT /db_xref="GOA:Q88897" FT /db_xref="InterPro:IPR001337" FT /db_xref="InterPro:IPR036417" FT /db_xref="UniProtKB/Swiss-Prot:Q88897" FT /protein_id="CAA85421.1" FT /translation="MGDMYDESFDKSGGPADLMDDSWVESVSWKDLLKKLHSIKFALQS FT GRDEITGLLAALNRQCPYSPYEQFPDKKVYFLLDSRANSALGVIQNASAFKRRADEKNA FT VAGVTNIPANPNTTVTTNQGSTTTTKANTGSTLEEDLYTYYKFDDASTAFHKSLTSLEN FT MELKSYYRRNFEKVFGIKFGGAAASSSAPPPASGGPIRPNP" FT CDS 1340..2404 FT /product="28.7K" FT /function="unknown" FT /db_xref="UniProtKB/Swiss-Prot:Q88898" FT /protein_id="CAA85422.2" FT /translation="MHELLRKWLDDTNVLLLDNGLVVKVRSRVPHIRTYEVIGKLSVFD FT NSLGDDTLFEGKVENVFVFMFRRFLCVNKDGHCYSRKHDELYYYGRVDLDSVSKVTSGY FT EKLFIHRELYILTDLIERVSKFFNLAQDVVEASFEYAKVEERLGHVRNVLQLAGGKSTN FT ADLTIKISDDVEQLLGKRGGFLKVVNGILSKNGSDVVTNDNELIHAINQNLVPDKVMSV FT SNVMKETGFLQFPKFLSKLEGQVPKGTKFLDKHVPDFTWIQALEERVNIRRGESGLQTL FT LADIVPRNAIAAQKLTMLGYIEYHDYVVIVCQSGVFSDDWATCRMLWAALSSAQLYTYV FT DASRIGPIVYGWLL" FT CDS 2587..>3455 FT /product="32.8K" FT /function="unknown" FT /db_xref="UniProtKB/Swiss-Prot:Q88899" FT /protein_id="CAA85423.2" FT /translation="MVIVTKGAYVHEFPRTAEWNAFAQILSREHGYIVSDTALEGAAKP FT YYVVNSSGFYGPPGLDGLISTLDRELQYYSKLLYEIKGLGVMSDENVFGTQYDGNLTAR FT VSRLERRLNPMSNIGSSSRPWSEHKSAVKKADLERYVYANFADWSNHLGPAGKSTREVV FT KYLMYRMGYYSDTSGIGHDLNYKHFRDHLDIYNLTCSPPFLVSSAVVDGHYARDKFVSF FT QGVCGFNPMFPDVNGLKSSWSLGRQLDDIRSQKKEVSGTNQEPNYYYDGDTLKPIGSGA FT SVVGERRPG" XX SQ Sequence 3855 BP; 1078 A; 647 C; 960 G; 1170 T; 0 other; ataaaacatt gcacctatgg tgttgccctg gctggggtat gtcagtgatc gcagtagaat 60 gtactaattg acaagttgga gaatacggta gaacgtcctt atccaacaca gcctttatcc 120 ctctccctga cgaggttttt gtcagtgtaa tatttctttt tgaactatcc agcttagtac 180 cgtacgggaa agtgactggt gtgcttatct ttgaaatgtt actttgggtt tcggttcttt 240 aggttagtaa gaaagcactt gtcttctcat acaaaggaaa acctgacgta tcgcttacga 300 aagtagcaat gaaagaaagg tggtggtttt aatcgtaccg caaaaaacga tggggtcgtt 360 ttaattaact tctcctacaa gcgtctaaac ggacgttggg gttttgctag tttctttaga 420 gaaaactagc taagtcttta atgttatcat tagagatggc ataaatataa tacttgtgtc 480 tgctgataag atcattttaa tttggacgat tagacttgtt gaactacagg ttactgaatc 540 acttgcgcta atcaacatgg gagatatgta cgatgaatca tttgacaagt cgggcggtcc 600 tgctgacttg atggacgatt cttgggtgga atcagtttcg tggaaagatt tgttgaagaa 660 gttacacagc ataaaatttg cactacagtc tggtagagat gagatcactg ggttactagc 720 ggcactgaat agacagtgtc cttattcacc atatgagcag tttccagata agaaggtgta 780 tttcctttta gactcacggg ctaacagtgc tcttggtgtg attcagaacg cttcagcgtt 840 caagagacga gctgatgaga agaatgcagt ggcgggtgtt acaaatattc ctgcgaatcc 900 aaacacaacg gttacgacga accaagggag tactactact accaaggcga acactggctc 960 gactttggaa gaagacttgt acacttatta caaattcgat gatgcctcta cagctttcca 1020 caaatctcta acttcgttag agaacatgga gttgaagagt tattaccgaa ggaactttga 1080 gaaagtattc gggattaagt ttggtggagc agctgctagt tcatctgcac cgcctccagc 1140 gagtggaggt ccgatacgtc ctaatcccta gggatttaag gacgtgaact ctgttgagat 1200 ctctgtgaaa ttcagagggt gggtgatacc atattcactg atgccattag cgacatctaa 1260 atagggctaa ttgtgactaa tttgagggaa tttcctttac cattgacgtc agtgtcgttg 1320 gtagcatttg agtttcgcaa tgcacgaatt acttaggaag tggcttgacg acactaatgt 1380 gttattgtta gataatggtt tggtggtcaa ggtacgtagt agagtcccac atattcgcac 1440 gtatgaagta attggaaagt tgtcagtttt tgataattca ctgggagatg atacgctgtt 1500 tgagggaaaa gtagagaacg tatttgtttt tatgttcagg cggttcttgt gtgtcaacaa 1560 agatggacat tgttactcaa ggaagcacga tgagctttat tattacggac gagtggactt 1620 agattctgtg agtaaggtta cctcagggta cgagaaactc tttattcaca gagaacttta 1680 tatcttaaca gatttaattg agagagtgag taagttcttt aacttagctc aggatgtggt 1740 agaagcaagt tttgagtatg ccaaggttga agagaggtta ggtcacgtca gaaacgtgtt 1800 gcaactggcg ggtggaaaat ccacgaatgc cgatttgaca attaagattt ctgacgatgt 1860 cgaacaactg cttggaaaac gtggtggatt cttgaaggtt gtgaacggta tcttgagcaa 1920 gaatggtagt gacgtagtca ctaacgacaa tgagcttatt catgcaatta accaaaatct 1980 ggtaccagat aaagtcatgt ctgtgtcgaa cgtaatgaaa gagactgggt ttctgcagtt 2040 tccaaagttt ttatctaagt tggaaggaca ggtaccgaaa ggaacaaaat ttctagacaa 2100 acacgttcct gattttactt ggatacaagc tcttgaagaa agagtgaata ttcggagagg 2160 agaatcggga cttcagactc tattagctga tatcgttccg aggaatgcta ttgctgctca 2220 gaaattgaca atgctaggtt acatcgagta tcacgactat gtggtgatcg tctgtcagtc 2280 tggagtattt agtgacgatt gggcgacatg tagaatgctt tgggcagcac tatctagtgc 2340 tcaactatat acctatgttg acgccagtag aatcggtcca atcgtttacg gttggttatt 2400 gtgattggtt gatgaggaaa ttctgtttga aggctggttg aaagtaccag ggcgggagaa 2460 gccatattct ctatcgttgt aggaagcgat tgaaataatt cctgtggtca cgtcgcacgt 2520 gaggtggttg ttaccataaa caataatgtc gttggcagca tttaaaataa ttccatagtt 2580 actaagatgg tgattgtgac caaaggagcg tatgttcatg aatttccgcg tacggctgag 2640 tggaatgctt ttgctcaaat tttgagtaga gaacacggtt atattgtatc agatacagca 2700 ttggagggag cggcgaaacc ttattacgtt gtgaacagta gtgggtttta tggtcctccg 2760 ggcttagatg gtctaatttc taccttggat agagagcttc agtattactc gaagttgtta 2820 tacgaaatca aaggacttgg tgttatgtca gatgaaaacg tctttggtac acagtatgat 2880 ggaaatctta ctgcaagagt gtctcgtctt gaacgcagac taaaccctat gtcaaacatt 2940 gggtctagtt cgcgtccttg gagtgaacat aagagtgctg ttaaaaaggc tgacttggaa 3000 cgatatgtgt acgccaactt cgccgattgg tcgaatcatt tagggccggc tgggaagagt 3060 actcgcgagg tcgtaaagta tttgatgtac cgaatgggct attacagtga tacatctggg 3120 atcgggcatg atctgaatta caaacatttc cgggaccatc ttgatattta caacttaact 3180 tgttctcccc ctttcctggt gagcagtgcg gttgtagatg gacactacgc acgggataag 3240 ttcgttagtt ttcaaggtgt atgtgggttc aatccgatgt ttccagacgt gaatggtttg 3300 aagagtagtt ggtctttagg tcgtcaactg gatgatatac ggtctcaaaa gaaagaggtt 3360 tctggaacaa accaggagcc aaactattac tacgatggcg acacactaaa accgatcggt 3420 tcaggtgcga gcgttgtagg agagagaagg ccgggatgga ggtgaatgtc ccgaagacat 3480 taaactacgt tctttaagta gatccgtgcc tgaagtttta ggttcaattt aaacctacga 3540 gattgacatt ctcgactgat cttgattgat cggtaagtct tttgtaattt aattttcttt 3600 ttgattttat tttaaattgt tatctgtttc tgtgtataga ctgtttgaga tcggcgttta 3660 ggctcattgt cttaccatag gggaacggac tttgtttgtg ttgttatttt atttgtattt 3720 tattaaaatt ctcaacgatc tgaaaaagcc tcgcgctaag agattgttgg ggggtgagta 3780 agtactttta aagtgatgat ggttacaaag gcaaaagggg taaaacccct cgcctacgta 3840 agcgttatta cgccc 3855 //