ID Z29370; SV 1; linear; genomic RNA; STD; VRL; 6312 BP. XX AC Z29370; XX DT 18-MAY-1994 (Rel. 39, Created) DT 12-APR-2012 (Rel. 112, Last updated, Version 20) XX DE Turnip vein-clearing virus genes for RNA-dependent RNA polymerase, 122K DE protein, transport protein and coat protein, genomic RNA XX KW . XX OS Turnip vein-clearing virus OC Viruses; Riboviria; Virgaviridae; Tobamovirus. XX RN [1] RP 1-6311 RA Dorokhov Y.L., Ivanov P.A., Novikov V.K., Yefimov V.A., Atabekov I.G.; RT "Tobamovirus of cruciferous plants: nucleotide sequence of genes of the RT transport protein, capsid protein, and 3'-terminal untranslated region"; RL Dokl. Akad. Nauk SSSR 332:518-522(1993). XX RN [2] RC revised by author 15-MAR-94 RP 1-6312 RA Dorokhov Y.; RT ; RL Submitted (13-JAN-1994) to the INSDC. RL Dorokhov Y., A.N.Belozersky Institute, Moscow State University, Moscow, RL Russia. XX RN [3] RP 1-6312 RX DOI; 10.1016/0014-5793(94)00721-7. RX PUBMED; 7545946. RA Dorokhov Y.L., Ivanov P.A., Novikov V.K., Agranovsky A.A., Morozov S., RA Efimov V.A., Casper R., Atabekov J.G.; RT "Complete nucleotide sequence and genome organization of a tobamovirus RT infecting cruciferae plants."; RL FEBS Lett. 350(1):5-8(1994). XX RN [4] RP 1-6312 RA Dorokhov Y.L., Ivanov P.A., Novikov V.K., Efimov V.A., Atabekov I.G., RA Efimov V.A., Casper R., Atabekov J.G.; RT "obamovirus of the Cruciferae family: nucleotide sequence of the RT 5'-untranslated region and nonstructural protein genes controlling RT replication viral genome."; RL Dokl. Akad. Nauk SSSR 335:792-798(1994). XX RN [5] RP 1-6312 RA Belenovich E., Generozov E., Novikov V., Zavriev S.; RT "Properties and the genome structure of the K2 strain of tobacco mosaic RT virus"; RL Mol. Biol. (Mosk.) 0:0(0). XX DR MD5; 662ab7411998c5d30323aef8cfb605ea. DR EuropePMC; PMC3416697; 22559081. DR EuropePMC; PMC406431; 15103020. DR EuropePMC; PMC4686597; 26733982. DR EuropePMC; PMC6390105; 30804453. DR RFAM; RF00225; IRES_Tobamo. DR RFAM; RF01072; TMV_UPD-PK3. XX FH Key Location/Qualifiers FH FT source 1..6312 FT /organism="Turnip vein-clearing virus" FT /mol_type="genomic RNA" FT /note="genomic RNA of the tobacco mosaic virus infecting FT cruciferous plants" FT /db_xref="taxon:29272" FT CDS 69..3392 FT /product="122K" FT /function="protein containing methyltransferase & FT RNA-helicase domains" FT /note="ORF1" FT /db_xref="GOA:Q88603" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:Q88603" FT /protein_id="CAA82558.1" FT /translation="MAQFQQTIDMQTLQAAAGPNSLVNDLASRRVYDNAVEELNARSRR FT PKVHFSKAVSTEQTLIATNAYPEFEISFTHTQSAVHSLAGGFRSLELEYLMMQVPFGSL FT TYDIGGNFSAHLFKGRDYVHCCMPNLDVRDIARHEGHKEAIHSYVNRLKRQQRPVPEYQ FT RAAFNNYAENPHFVHCDKPFQQCELTTANGTDTYAVALLSIYDIPVEEFGSALLRKNVK FT TCFAAFHFHENMLLDCDTVTLDEIGATFQRAGDNLSFFFHNESTLNYTHSFSNIIKYVC FT KTFFPASQRFVYHKEFLVTRVNTWYCKFTRVDTFTLFRGVYHNNVDCEEFYKAMDDAWH FT YKKTLAMLNAERTIFKDNAALNFWFPKVRDMVIVPLFDASITTGRMSRREVMVNKDFVY FT TVLNHIKTYQAKALTYANVLSFVESIRSRVIINGVTARSEWDTDKAILGPLAMTFFLIT FT KLGHVQDEIILKKFQKFDRTTNELIWTSLCDALMGVIPSVKETLVRGGFVKVAEQALEI FT KIPELYCTFADRLVLQYKKAEEFQSCDLSKPLEESEKYYNALSELSVLENLDSFDLEAF FT KTLCQQKSVDPDMAAKVVVAIMKCELTLPFKKPTEEEISESLKTGEGTSAEHKDVLSLQ FT NDAPFPCVKNLVEGSVPAYGMCPKGGGFDKLDVDIADFHLKSVDAVKRGTMMSAVYTGS FT IEVRQMKNYIDYLSASLSATVSNLCKVLRDVHGVDPESQEKSGVWDVRRGRWLLKPNAK FT SHAWGVAEDANHKLVIVLLNWDDGKPVCDETWFRVAVSSDSLIYSDMGKLKTLTTCSPN FT GEPPEPNAKVILVDGVPGCGKTKEIIEKVNFSEDLILVPGKEASKMIIRRANHAGVIRA FT DKDNVSTVDSFLMHPSRRVFKRLFIDEGLMLHTGCVNFLLLLSQCDVAYVYGDTQQIPF FT ICRVANFPYPAHFAKLVADEKEVRRVTLRCPADVTYFLNKKYDGAVMCTSAVERSVKAE FT VVRGKGALNPITLPLEGKILTFTQADKFELLEKGYKDVNTVHEVQGETYEKTAIVRLTS FT TPLEIISRASPHVLVALTRHTTRCKYYTVVLDPMVNVISEMEKLSNFLLDMYRVEAGIQ FT " FT CDS 69..4874 FT /transl_except=(pos:3390..3392,aa:OTHER) FT /product="178K" FT /function="protein containing RNA-dependant RNA polymerase" FT /note="ORF2" FT /note="readthrough protein" FT /db_xref="GOA:Q88604" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:Q88604" FT /protein_id="CAA82559.1" FT /translation="MAQFQQTIDMQTLQAAAGPNSLVNDLASRRVYDNAVEELNARSRR FT PKVHFSKAVSTEQTLIATNAYPEFEISFTHTQSAVHSLAGGFRSLELEYLMMQVPFGSL FT TYDIGGNFSAHLFKGRDYVHCCMPNLDVRDIARHEGHKEAIHSYVNRLKRQQRPVPEYQ FT RAAFNNYAENPHFVHCDKPFQQCELTTANGTDTYAVALLSIYDIPVEEFGSALLRKNVK FT TCFAAFHFHENMLLDCDTVTLDEIGATFQRAGDNLSFFFHNESTLNYTHSFSNIIKYVC FT KTFFPASQRFVYHKEFLVTRVNTWYCKFTRVDTFTLFRGVYHNNVDCEEFYKAMDDAWH FT YKKTLAMLNAERTIFKDNAALNFWFPKVRDMVIVPLFDASITTGRMSRREVMVNKDFVY FT TVLNHIKTYQAKALTYANVLSFVESIRSRVIINGVTARSEWDTDKAILGPLAMTFFLIT FT KLGHVQDEIILKKFQKFDRTTNELIWTSLCDALMGVIPSVKETLVRGGFVKVAEQALEI FT KIPELYCTFADRLVLQYKKAEEFQSCDLSKPLEESEKYYNALSELSVLENLDSFDLEAF FT KTLCQQKSVDPDMAAKVVVAIMKCELTLPFKKPTEEEISESLKTGEGTSAEHKDVLSLQ FT NDAPFPCVKNLVEGSVPAYGMCPKGGGFDKLDVDIADFHLKSVDAVKRGTMMSAVYTGS FT IEVRQMKNYIDYLSASLSATVSNLCKVLRDVHGVDPESQEKSGVWDVRRGRWLLKPNAK FT SHAWGVAEDANHKLVIVLLNWDDGKPVCDETWFRVAVSSDSLIYSDMGKLKTLTTCSPN FT GEPPEPNAKVILVDGVPGCGKTKEIIEKVNFSEDLILVPGKEASKMIIRRANHAGVIRA FT DKDNVSTVDSFLMHPSRRVFKRLFIDEGLMLHTGCVNFLLLLSQCDVAYVYGDTQQIPF FT ICRVANFPYPAHFAKLVADEKEVRRVTLRCPADVTYFLNKKYDGAVMCTSAVERSVKAE FT VVRGKGALNPITLPLEGKILTFTQADKFELLEKGYKDVNTVHEVQGETYEKTAIVRLTS FT TPLEIISRASPHVLVALTRHTTRCKYYTVVLDPMVNVISEMEKLSNFLLDMYRVEAGIQ FT XQLQIDAVFKGTNLFVQTPKSGDWRDMQFYNDTLLPGNSTILNEYDAVTMNLRDISLNV FT KDCRIDFSKSVQLPKEQPIFLKPKIRTAAEMPRTAGLLENLVAMIKRNMNAPDLTGTID FT IEDTASLVVEKFWDSYIDKEFSGTNEMTMTRESFSRWLSKQESSTVGQLADFNFVDLPA FT VDEYKHMIKSQPKQKLDLSIQDEYPALQTIVYHSKKINAIFGPMFSELTRMLLERIDSS FT KFLFYTRKTPAQIEDFFSDLDSTQAMEILELDISKYDKSQNEFHCAVEYKIWEKLGIDE FT WLAEVWKQGHRKTTLKDYTAGIKTCLWYQRKSGDVTTFIGNTIIIAACLSSMIPMDKVI FT KAAFCGDDSLIYIPKGLDLPDIQAGANLMWNFEAKLFRKKYGYFCGRYVIHHDRGAIVY FT YDPLKLISKLGCKHIRDVVHLEELRESLCDVASNLNNCAYFSQLDEAVAEVHKTAVGGS FT FAFCSIIKYLSDKRLFRDLFFV" FT CDS 4877..5680 FT /product="29K" FT /function="transport protein" FT /note="ORF3" FT /db_xref="GOA:Q88605" FT /db_xref="InterPro:IPR001022" FT /db_xref="InterPro:IPR028919" FT /db_xref="UniProtKB/TrEMBL:Q88605" FT /protein_id="CAA82560.1" FT /translation="MSIVSYEPKVSDFLNLSKKEEILPKALTRLKTVSISTKDIISVKE FT SETLCDIDLLINVPLDKYRYVGILGAVFTGEWLVPDFVKGGVTISVIDKRLANSKECVI FT GTYRAAAKSKRFQFKLVPNYFVSTVDAKRKPWQVHVRIQDLKIEAGWQPLALEVVSVAM FT VTNNVVMKGLREKVVAINDPDVEGFEGVVDEFVDSVAAFKAVDNFKRRKKKVEEKGVVS FT KYKYRPEKYAGPDSFNLKEENVLQHYKPESVPVFRSGVGRAHSDA" FT CDS 5604..6077 FT /product="18K" FT /function="coat protein" FT /note="ORF4" FT /db_xref="GOA:Q88606" FT /db_xref="InterPro:IPR001337" FT /db_xref="InterPro:IPR036417" FT /db_xref="UniProtKB/TrEMBL:Q88606" FT /protein_id="CAA82561.1" FT /translation="MSYNITNPNQYQYFAAVWAEPIPMLNQCISALSQSYQTQAARDTV FT RQQFSNLLSAVVAPSQRFPETGSRVYVNSAVIKPLYEALMKSFDTRNRIIETEEESRPS FT ASEVRNATQRVDDATVSIRSQIQLLLSELSSGHGYMNRAEFEALVPWTTAAAT" XX SQ Sequence 6312 BP; 1800 A; 1213 C; 1590 G; 1709 T; 0 other; gttttagttt tattgcaaca acaacaacaa attacaataa caacaaacaa aatacaaaca 60 acaacaacat ggcacaattt caacaaacaa ttgacatgca aactctccaa gctgccgcgg 120 gaccgaacag cttggtgaat gatttggcat ctcgtcgcgt ttacgacaat gcggttgagg 180 agctgaatgc ccgttctagg cgtccaaagg tccatttctc caaagcagtg tctacggaac 240 agacgctgat tgcaacgaac gcatatccgg agtttgagat ttccttcact catacacagt 300 ctgctgtgca ctccttggcc ggtggctttc gatcgcttga gttggagtat ctcatgatgc 360 aagttccttt cggttctctg acgtacgata tcggtggtaa cttttctgcg caccttttta 420 agggccgcga ctatgtgcac tgctgtatgc ctaatttgga tgtgcgtgac attgctcgcc 480 acgagggaca taaagaagct attcacagtt acgtgaatcg tttgaaaagg cagcaacgtc 540 ctgtacccga ataccagagg gcagctttca acaattacgc tgagaatccg cactttgtcc 600 attgcgacaa accttttcaa cagtgtgaac ttacgacggc gaatggtact gacacctacg 660 ctgtggctct ccttagtatt tacgatattc ctgttgagga gttcggttcg gcgctactca 720 ggaaaaatgt gaaaacttgt ttcgcagcct tccacttcca tgagaatatg cttcttgatt 780 gtgacacagt cacactcgac gaaatcggag ctactttcca gagggctggt gataatctaa 840 gttttttctt tcacaatgag agcactctca attataccca cagttttagt aatataatta 900 agtatgtgtg taaaacgttc tttcctgcta gtcaacggtt tgtgtatcat aaggagtttt 960 tggttaccag agtcaacact tggtactgta agtttacaag agtggatact tttactcttt 1020 tccgtggtgt gtatcataat aatgtggact gcgaagagtt ttacaaggct atggatgacg 1080 cgtggcatta caagaagacg ctagcaatgc tcaatgctga gagaaccatc ttcaaggaca 1140 atgcagcgct aaatttttgg ttcccgaaag tgagagacat ggtcatcgtc cctctttttg 1200 acgcttctat tacaacaggg aggatgtcta ggagagaggt tatggtgaac aaggatttcg 1260 tttacacggt cctcaaccac ataaaaacgt accaagccaa agctttaact tacgcaaatg 1320 tcctgtcctt tgtggagtct attaggtcta gagtcataat taacggtgtc actgccaggt 1380 ctgaatggga cacagacaag gcaattctag gtccattagc gatgacattt ttccttataa 1440 caaagttggg tcatgtgcag gatgaaataa tcctgaaaaa gttccagaaa ttcgatagaa 1500 ccaccaatga gctgatttgg acaagtctct gcgatgccct gatgggggtt attccctcgg 1560 tcaaggagac acttgtgcgc ggtggtttcg tgaaagtagc agaacaggct ctagagataa 1620 aaattcccga gctgtactgt acctttgccg acagattggt actgcagtac aagaaagcag 1680 aggagttcca atcgtgtgat ctttccaaac ctctagaaga atccgagaag tactataacg 1740 cactatccga gctatctgtg ctcgagaatc tcgattcctt cgacttagag gcttttaaga 1800 ctttatgtca gcagaagagt gtggacccgg acatggcagc aaaggtggtt gtggcaatca 1860 tgaagtgtga attaacgttg cctttcaaga aacctacaga agaggaaatc tcggagtcgc 1920 ttaaaacagg tgaggggaca agtgcagagc ataaggatgt gttgagctta caaaatgatg 1980 ctccgttccc gtgtgtgaaa aatctagtag agggttccgt gccggcgtat ggaatgtgtc 2040 ctaaaggtgg tggtttcgac aagttggatg tggatattgc tgattttcat ctcaagagtg 2100 tagatgcagt gaaaagggga actatgatgt ctgcggtgta cacggggtca attgaagttc 2160 gacaaatgaa gaactacatt gactacttaa gtgcgtcgct gtcagctaca gtctcaaatc 2220 tctgtaaggt gcttagagat gttcacggcg ttgacccaga gtcacaagag aaatcgggag 2280 tgtgggacgt tagaagagga cgttggttac ttaaacctaa cgcgaagagt cacgcgtggg 2340 gtgtggcgga agatgccaac cacaagttgg ttattgtgtt gctcaactgg gatgatggaa 2400 agccggtgtg tgacgaaaca tggttcaggg tggccgtgtc aagcgattcc ttgatatact 2460 cggatatggg aaaactcaag acgcttacga cgtgcagtcc gaatggtgag ccaccggaac 2520 ctaacgccaa agtaattttg gtcgacggtg ttcccggttg tggaaaaacg aaggagatta 2580 tcgaaaaggt aaacttctca gaggacttga ttttagtccc tgggaaggag gcttctaaga 2640 tgattatccg aagggctaac catgctggag taataagagc agataaggac aatgtcagta 2700 cggtagattc cttcttgatg catccttcta ggagggtgtt caagaggtta tttatcgatg 2760 aaggactgat gctgcacaca ggctgtgtga atttcctatt gctactgtct caatgtgacg 2820 ttgcatacgt gtatggggac acacaacaaa ttccgttcat ttgcagagtc gcgaacttcc 2880 cgtatcctgc acattttgca aaactcgtcg cagatgagaa ggaggttaga agagttacgc 2940 tcaggtgccc agctgatgtc acatatttcc ttaacaagaa gtatgacggg gcggtgatgt 3000 gtactagtgc ggtagagaga tccgtaaagg cagaagtggt aagaggaaaa ggtgctttga 3060 acccaataac cttaccgttg gagggtaaaa ttttgacctt tacgcaggct gacaagttcg 3120 agttgctgga gaagggttac aaagatgtga acacagtgca cgaggtgcaa ggggagacgt 3180 acgagaagac tgctattgtc cgtttgacat cgactccgtt agagatcata tcgagagcat 3240 cacctcatgt tttggtggcg ctgacaagac acactacgcg ttgtaaatat tacaccgtcg 3300 tgttggaccc tatggtgaat gtgatctcag aaatggagaa gttatctaat tttcttctcg 3360 acatgtatag agttgaagcg gggatccaat agcaattaca gatagatgca gtattcaagg 3420 gaacgaactt atttgttcag acgcccaagt ctggagactg gcgagacatg caattttaca 3480 atgacactct tcttcccggg aacagtacta ttcttaatga atatgatgct gtcacgatga 3540 atttgaggga tatttcctta aacgtcaaag attgcagaat cgacttctcc aaatccgtgc 3600 agcttcctaa ggagcaacct attttcctta agcctaaaat aagaactgcg gcagaaatgc 3660 cgaggactgc aggtttgctg gaaaatttgg tagccatgat caagagaaac atgaacgcgc 3720 cggacctgac agggacaatc gacattgagg atactgcatc tcttgtagtt gaaaagtttt 3780 gggattcgta cattgataag gaattcagcg gaacgaatga aatgaccatg acaagggaaa 3840 gtttttctag atggctctct aaacaagagt cgtctacggt tggtcagttg gcggacttta 3900 actttgtaga tttgccggcg gtggatgagt acaagcatat gatcaagagt cagccaaagc 3960 aaaagttaga cttgagcatt caagatgaat atcctgcatt gcagacaata gtctaccatt 4020 cgaaaaagat caatgcaatt ttcggtccta tgttttcaga actcacgagg atgttactcg 4080 aaagaattga ctcttcgaag tttctgttct acactagaaa gacaccagcg cagatagagg 4140 acttcttctc tgacctagac tcaacccagg cgatggaaat tctagaactc gacatttcga 4200 aatatgacaa gtcacagaac gagttccatt gtgcagtaga gtacaagatc tgggaaaagt 4260 taggaatcga tgagtggtta gctgaagtat ggaaacaagg acacagaaaa acgaccttga 4320 aagactatac ggccggaatc aaaacatgtc tttggtatca aaggaaaagt ggtgatgtga 4380 cgacctttat aggtaacacc atcatcattg cagcttgtct gagctcaatg atccccatgg 4440 acaaagtgat aaaggcagcc ttttgtggag atgacagcct aatttacatt cctaagggtt 4500 tagacttgcc tgatattcag gcgggcgcga acctcatgtg gaactttgag gccaaactct 4560 tcaggaagaa gtatggttac ttctgcggtc gttatgttat tcaccatgat agaggagcca 4620 ttgtatatta cgacccgctg aaactgatat ctaagttagg ttgtaaacat attagagacg 4680 ttgttcattt ggaagagtta cgcgagtctt tgtgtgatgt agctagtaac ctaaataatt 4740 gtgcgtattt ttcacagtta gatgaggccg ttgccgaggt tcataagacc gcggtaggcg 4800 gttcgtttgc tttttgtagt ataattaaat atttgtcaga taagagattg tttagagatt 4860 tgttctttgt ttgataatgt cgatagtttc gtacgaaccc aaggtaagtg acttccttaa 4920 tctttctaag aaggaagaga tcttgccgaa ggctctaacg aggttaaaga ccgtgtctat 4980 tagtactaaa gatattatat ctgttaagga gtctgagact ttgtgtgata tagatttgtt 5040 aatcaatgtg ccattagata agtatagata tgtgggtatc ctaggtgctg tttttaccgg 5100 agagtggctt gtgccagact ttgttaaagg tggtgtgacg ataagtgtga tagataagcg 5160 tcttgcgaac tctaaggagt gcgtgattgg tacgtacaga gctgcagcca agagtaagag 5220 gttccagttc aaattggttc caaattactt tgtgtccact gtggacgcaa agaggaagcc 5280 gtggcaggtt catgttcgta ttcaagactt gaagatcgag gcaggttggc agccgttagc 5340 tctggaagtg gtttcagttg ctatggttac caataacgtt gttatgaagg gtttgaggga 5400 aaaagtcgtc gcaataaatg atccggacgt cgaaggtttc gaaggtgtgg ttgacgaatt 5460 cgtcgattcg gttgcagcat ttaaagcggt tgacaacttt aaaagaagga aaaagaaggt 5520 tgaagaaaag ggtgtagtaa gtaagtataa gtacagaccg gagaagtacg ccggtcctga 5580 ttcgtttaat ttgaaagaag aaaatgtctt acaacattac aaacccgaat cagtaccagt 5640 atttcgcagc ggtgtgggca gagcccattc cgatgcttaa ccagtgcata tcggcattgt 5700 cacaatcgta ccaaacacaa gctgcgagag acactgttag acagcaattc tcaaacttgt 5760 tgagtgcggt tgtggctccg agccagcggt tcccagaaac agggtcccgg gtgtatgtta 5820 actcggctgt tataaagccg ttgtacgagg ctcttatgaa gtcctttgat actagaaata 5880 ggatcataga gacggaagag gagtcacgcc cgtcagcttc cgaagtacgt aacgcgacac 5940 aacgtgttga tgatgcgacc gtttccatta gaagtcaaat tcagctgttg ctgagcgagc 6000 tttccagtgg acatggttat atgaacaggg cagagttcga ggctttggtg ccatggacta 6060 ctgctgctgc tacttaggcg tggtgcgcac gatagcgcat agtgtttttc tctccacttg 6120 aatcgaagag atagacttac ggtgtaaatc cgtaggggtg gcgtaaacca aattacgcaa 6180 tgttttgggt tccatttaaa tcgaaacccc ttatttcctg gatcacctgt taacgcacgt 6240 ttgacgtgta ttacagtggg aataagtaaa agtgagaggt tcgaatcctc cctaaccccg 6300 ggtaggggcc ca 6312 //