ID Z24758; SV 1; circular; genomic DNA; STD; VRL; 2815 BP. XX AC Z24758; XX DT 29-JUL-1993 (Rel. 36, Created) DT 14-NOV-2006 (Rel. 89, Last updated, Version 8) XX DE Indian cassava mosaic virus encoding AR0 complete CDS. XX KW AL0 gene; AL1 gene; AL2 gene; AL3 gene; AL4 gene; AL5 gene; AR0 gene; KW AR1 gene. XX OS Indian cassava mosaic virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2815 RX PUBMED; 8245859. RA Hong Y., Robinson D.J., Harrison B.D.; RT "Nucleotide sequence evidence for the occurrence of three distinct RT whitefly-transmitted geminiviruses in cassava."; RL J. Gen. Virol. 74:2437-2443(1993). XX RN [2] RP 1-2815 RA Hong Y.; RT ; RL Submitted (27-JUL-1993) to the INSDC. RL Hong Y., Scottish Crop Research Institute, Virology, Invergowrie, Dundee, RL Scotland, United Kingdom, DD2 5DA XX DR MD5; e783981d31125a80ee884a8ae84e679e. DR EuropePMC; PMC1079959; 15784145. DR EuropePMC; PMC6344024; 30673741. XX FH Key Location/Qualifiers FH FT source 1..2815 FT /organism="Indian cassava mosaic virus" FT /mol_type="genomic DNA" FT /db_xref="taxon:31600" FT CDS complement(join(1761..2815,1)) FT /product="AL1" FT /function="replication-associated protein" FT /db_xref="GOA:Q82676" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/Swiss-Prot:Q82676" FT /citation=[1] FT /protein_id="CAA80891.1" FT /translation="MSPPKRFQINAKNYFLTYPRCSLTKEEALSQIRNFQTPTNPKFIK FT ICRELHENGEPHLHVLIQFEGKYKCQNQRFFDLVSPTRSAHFHPNIQGAKSSSDVKSYI FT DKDGDTWRWGTFQIDGRSARGGQQSANDAYAAALNSGSKSEALKILRELAPRDYLRDFH FT HISSNLDRIFTKPPPPYENPFPLSSFDRVPEELDEWFHENVMGRARPLRPKSIVIEGDS FT RTGKTMWSRALGPHNYLCGHLDLSPKVYNNDAWYNVIDDVDPHYLKHFKRIHGGPEDWQ FT SNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLDEEKNSALKAWALKNATFISLEGPLY FT SGTNQGPTQSC" FT exon complement(1) FT /number=1 FT CDS 352..690 FT /product="AR0" FT /db_xref="GOA:Q08593" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/Swiss-Prot:Q08593" FT /citation=[1] FT /protein_id="CAA80884.1" FT /translation="MWDPLLNEFPESVHGFRCMLAVKYLQLVECTYSPDTLGYDLIRDL FT FSVIRAKNYVEATSRYHNFYSRLEGSSPSELRQPIQQPCGCPYCPRHKKTILDKQTHQS FT EAQVVSDV" FT CDS complement(472..852) FT /product="AL5" FT /citation=[1] FT /protein_id="CAA80890.1" FT /translation="MDLTQNLLPTRCVSPIPRVTSEMHMTLPIWTTSCLDSNDWTLHGP FT SQPLGTSGLLYIRYHLGFRLMGLFVQDCLFVTRTVGTAARLLYGLSKFRRRRTFEPGVE FT IMISAGRFDIILRPNNREQISN" FT CDS complement(497..1060) FT /product="AL4" FT /db_xref="InterPro:IPR006892" FT /db_xref="InterPro:IPR013671" FT /db_xref="UniProtKB/Swiss-Prot:Q08591" FT /citation=[1] FT /protein_id="CAA80889.1" FT /translation="MPLPENLIAITMHVLHGSCTGLIIKHIKYFTKILRLINRPTIPYK FT EEHYAIRVILGLNVFIHPYLAQDVNGLNAKPLTHPMCKPNSTSDIRDAHDLTYMDHIVS FT RLERLDLTWAFTALRNIWASIHPIPPGLPIDGSVCPGLSFCDADSRDSRTAAVWAVEVQ FT TATNLRAWSRNYDICWSLRHNSSP" FT CDS 512..1282 FT /product="AR1" FT /function="coat protein" FT /db_xref="GOA:Q08583" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/Swiss-Prot:Q08583" FT /citation=[1] FT /protein_id="CAA80885.1" FT /translation="MSKRPADIIISTPGSKVRRRLNFDSPYSSRAAVPTVRVTKRQSWT FT NRPINRKPRWYRMYRSPDVPKGCEGPCKVQSFESRHDVVHIGKVMCISDVTRGIGLTHR FT VGKRFCVKSIYILGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEP FT STATVKNMHRDRYQVLRKWHATVTGGQYASKEQALVRRFFRVNNYVVYNQQEAGKYENH FT TENALMLYMACTHASNPVYATLKIRIYFYDSVSN" FT CDS complement(1279..1683) FT /product="AL3" FT /db_xref="GOA:Q08590" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/Swiss-Prot:Q08590" FT /citation=[1] FT /protein_id="CAA80888.1" FT /translation="MDSRTGELITAAQAMNGVFIWEVPNPLYFKIIQHDNRPFVMNQDI FT ITVQIRFNHNLRKALGLHQCWMDFKVWTTLQPQTWRFLRVFKTQVLKYLDSLGVISINT FT IVKAVEHVLYNVIHGTDRVEQSNLIKLNIY" FT CDS complement(1424..1831) FT /product="AL2" FT /db_xref="GOA:Q08589" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/Swiss-Prot:Q08589" FT /citation=[1] FT /protein_id="CAA80887.1" FT /translation="MRPSSPSKDHYTQVPIKVQHRAAKRKRIRRKRVDLNCGCSYYVHI FT NCHNHGFTHRGTHHCSSGDEWRLYLGGTKSPLFQDHSTRQQTVRNEPGHNNRPDTVQPQ FT PEESVGTTSMLDGFQGLDDLTASDLAFLEGI" FT exon complement(1761..2815) FT /number=2 FT CDS complement(2357..2665) FT /product="AL0" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/Swiss-Prot:Q08588" FT /citation=[1] FT /protein_id="CAA80886.1" FT /translation="MRMGSLICTCSSSSKANTNARISDSSTWYHQPGQHISIQTFRELN FT PAPTSSPTSTRTVILGDGEHFRSMDDQPEGVNNLQTTLTPRHLTAAVNQRLLRSLEN" XX SQ Sequence 2815 BP; 682 A; 616 C; 688 G; 829 T; 0 other; ttctctctcc tcaatcggta ctcagatagt ttagccccca tattaggtac tcaatatata 60 catgagtacc aaatggcata gatgtaaata atggaaatat aatttgaatt caaaagcggc 120 catccgtata atattaccgg atggccgcgc ccccctcttt atggtggtcc cccccacgtg 180 gatggccgcg cccccctctt tatggtggtc ccccccacgt ggatggccgc gccccccgct 240 ttatggtggc cccccccacg tggagatgtc ccccactcag aacgctcgct caaagcttgt 300 atatgtgtgg tcccccttta agtacttggg caacaagtcg ttgcctgtac aatgtgggac 360 cctttactaa acgagttccc tgagtctgtc cacggtttcc ggtgtatgct cgccgtgaaa 420 taccttcagc tggttgaatg tacttattct cctgatacac tcggttacga tttaattaga 480 gatttgttct ctgttattag ggcgaagaat tatgtcgaag cgaccagcag atatcataat 540 ttctactcca ggctcgaagg ttcgtcgccg tctgaacttc gacagcccat acagcagccg 600 tgcggctgtc cctactgtcc gcgtcacaaa aagacaatcc tggacaaaca gacccatcaa 660 tcggaagccc aggtggtatc ggatgtatag aagcccagat gttcctaagg gctgtgaagg 720 cccatgtaag gtccagtcgt tcgagtcgag acacgatgtg gtccatatag gtaaggtcat 780 gtgcatctct gatgtcactc gtggaattgg gcttacacat cgggtgggta agaggttttg 840 cgttaagtcc atttacatcc tgggcaagat atggatggat gaaaacatta agaccaagaa 900 tcacacgaat agcgtaatgt tcttccttgt aagggatcgt aggcctgttg ataagcctca 960 ggattttggt gaagtattta atatgtttga taatgagccc agtacagcta ccgtgaagaa 1020 catgcatcgt gatcgctatc aagttctcag gaagtggcat gccacggtca ctggtggtca 1080 gtatgcgagc aaggagcagg ctttagttag gcgttttttt agggttaata attatgttgt 1140 gtataaccag caagaggctg ggaaatatga gaaccatact gagaatgcat taatgttgta 1200 catggcgtgt actcatgcct ctaatcctgt atacgctacg ttgaagatta gaatttattt 1260 ctatgattca gtgagcaatt aataaatatt taattttatt aaattagact gctcaacacg 1320 gtcagtccca tggattacat tgtacaatac atgctctacg gcttttacaa tagtattaat 1380 acttataact cctaagctat ctaagtattt caatacttgg gtcttaaata ccctcaagaa 1440 acgccaggtc tgaggctgta aggtcgtcca gaccttgaaa tccatccagc attgatgtag 1500 tcccaacgct ttcctcaggt tgtggttgaa ccgtatctgg acggttatta tgtcctggtt 1560 cattacgaac ggtctgttgt cgtgttgaat gatcttgaaa tagaggggat ttggtacctc 1620 ccagataaag acgccattca tcgcctgagc tgcagtgatg agttcccctg tgcgtgaatc 1680 catggttgtg gcagttaatg tggacgtagt acgagcaccc gcagttgaga tctacccttt 1740 tacgccggat gcgtttacgc ttagcagctc tgtgttggac cttgattggt acctgagtat 1800 agtggtcctt cgagggagat gaaggtcgca tttttcagag cccaggcttt taatgcgcta 1860 ttcttttcct cgtccaggaa ttctttatag ctggaattgg ggcctggatt gcagaggaag 1920 atagtgggaa tacctccttt aatttgaact ggcttaccgt acttggtgtt tgattgccag 1980 tcctctgggc ccccatgaat tcttttgaag tgctttaggt agtggggatc gacgtcatca 2040 atgacgttgt accatgcatc attgttgtag accttaggac ttaaatccag gtgtccacat 2100 aggtaattat gtggacccaa tgcacgggac cacatggtct tgcccgtccg actatcgcct 2160 tcgattacga ttgattttgg tctcaaaggc cgcgcacgac ccatcacgtt ttcgtggaac 2220 cactcgtcga gttcttctgg aactcggtca aacgaagaga gagggaaagg gttctcatat 2280 ggaggtggtg gttttgtaaa aatccgatcc aggtttgaac tgatgtgatg gaagtcccta 2340 agataatccc taggtgctaa ttctctaagg atcttaagag cctctgattt actgccgctg 2400 ttaagtgccg cggcgtaagc gtcgtttgca gattgttgac cccctctggc tgatcgtcca 2460 tcgatctgaa atgttcccca tctccaagta tcaccgtcct tgtcgatgta ggacttgacg 2520 tcggagctgg atttagctcc ctgaatgttt ggatggaaat gtgctgacct ggttggtgat 2580 accaggtcga agaatcgctg attctggcat ttgtatttgc cttcgaactg gatgagcacg 2640 tgcagatgag gctccccatt ctcatgtagc tccctgcata ttttgatgaa tttagggttt 2700 gtaggtgttt gaaagttcct aatttgagag agagcctctt ctttagttaa ggagcatcga 2760 gggtaagtga ggaaatagtt tttagcgttt atttgaaagc gcttaggtgg tgaca 2815 //