ID Z11866; SV 1; linear; genomic DNA; STD; VRL; 7396 BP. XX AC Z11866; XX DT 25-MAR-1992 (Rel. 31, Created) DT 22-NOV-2018 (Rel. 139, Last updated, Version 6) XX DE Cladosporium fulvum T-1 virus LTR-retrotransposon encoding homologues to DE retroviral gag, pol, and env genes XX KW env gene; gag gene; pol gene; retrotransposon; reverse transcriptase. XX OS Cladosporium fulvum T-1 virus OC Viruses; Ortervirales; Metaviridae; Metavirus. XX RN [1] RP 1-7396 RX DOI; 10.1007/BF00265429. RX PUBMED; 1377773. RA McHale M.T., Roberts I.N., Noble S.M., Beaumont C., Whitehead M.P., RA Seth D., Oliver R.P.; RT "CfT-I: an LTR-retrotransposon in Cladosporium fulvum, a fungal pathogen of RT tomato"; RL Mol. Gen. Genet. 233(3):337-347(1992). XX RN [2] RP 1-7396 RA Oliver R.P.; RT ; RL Submitted (17-MAR-1992) to the INSDC. RL Richard P Oliver, School of Biological Sciences, University of East Anglia, RL Norwich, NR4 7TJ, United Kingdom XX DR MD5; 36d7028fcd4f274241fcc475b0f15009. DR EuropePMC; PMC1383729; 12045146. DR EuropePMC; PMC60222; 11600699. XX FH Key Location/Qualifiers FH FT source 1..7396 FT /organism="Cladosporium fulvum T-1 virus" FT /strain="Race 4" FT /mol_type="genomic DNA" FT /clone="pNOM712.3" FT /db_xref="taxon:2052899" FT repeat_region 114..540 FT /rpt_type=LONG_TERMINAL_REPEAT FT mobile_element 114..7083 FT /mobile_element_type="transposon:CfT-1 LTR-retrotransposon" FT CDS 639..2558 FT /gene="homologue to retroviral gag genes" FT /product="putative gag homologue" FT /db_xref="GOA:Q7LHI6" FT /db_xref="InterPro:IPR001878" FT /db_xref="InterPro:IPR005159" FT /db_xref="InterPro:IPR005162" FT /db_xref="InterPro:IPR032567" FT /db_xref="InterPro:IPR036875" FT /db_xref="UniProtKB/TrEMBL:Q7LHI6" FT /protein_id="CAA77890.1" FT /translation="MLSMPWLLIQATNPQGWQPEFFYGDRVKFDTWVSQMDMYFLFNSM FT TENLKPIFATTFLRGRAQHWVKPFLRKYLDSNGEDNADGVFKSYNHLKHAMKSVFGVSN FT EIATAVRVIQHLTQKTSTAEYAAKFQEYAQLTDWDDEALQVMYRRGLKEHVKDELMRDG FT RKIDGLGDLVQVTIDLDDKLYERAMERRYDSKVSGKAGYTPGYDNRNRGFNDNYNKPKD FT KPYYGPQPMELDVTEKGRKIRNSKGNRRPPSSRETRTCYGCGKPGHIARDCRGKNMVRR FT EQFNMMQRRTSKSESSVESLGDIDYTRRVEERASNGSTEPLLDPSQGRGGCHGQQMVVI FT PFELQNQPRQFNMMARRVDYEIESESRNGHGSLHWRFCYQDSCQVHYSAKSGAGYWPQQ FT PRGTLGATHRQDATLQEVDIDESCFDDDGSDKENQDPGWNGSWSPEPQEESQETTGLDT FT IEEDQDPEESSEEDSSEGEESDTDDDNEQMTFTVDAPKKLYDMIIHLQRRHEEFLPRIG FT GRRMLHSIEFDKTLDTLRGMAWGYPLMETTENLATAVTERPPIGSRMIGTGYLTPSGTF FT VSNELRNMVQHARALYSETQKIQERHRVQMWTQKGSRQVQAEASRHEARRSTYEQGKGS FT TPQE" FT CDS <2327..5464 FT /codon_start=1 FT /gene="homologue of retroviral POL genes" FT /product="Reverse Transcriptase" FT /db_xref="GOA:V9H1L3" FT /db_xref="InterPro:IPR000477" FT /db_xref="InterPro:IPR001584" FT /db_xref="InterPro:IPR012337" FT /db_xref="InterPro:IPR021109" FT /db_xref="InterPro:IPR036397" FT /db_xref="InterPro:IPR041373" FT /db_xref="InterPro:IPR041588" FT /db_xref="UniProtKB/TrEMBL:V9H1L3" FT /protein_id="CAA77891.1" FT /translation="NDRYRIPHTVRNIRIKRIAQHGAARTRTLLRNAEDPGTSSSTDVD FT TERLAPGSSGGLETRSTTFHIRTGKRINSPGMSDRRELCNTEKAQASPTTTVFRTKIIV FT NGHKTDAMIDSGASGNFASESFVTRNRIATCKKKEGYELIAVDGSSLPSVERETIPLPL FT AIQRHHEEITLDVTDMASHDIVLGMPWLRKHNPVIDWRRGVLTFRECECVIDIQPAQWQ FT RSLADEARKQLNRIQLAPTRRTEEPPSTGTDTGVGPPGHEVTGSDGSNAPSKDTNISEL FT SIPKEYRKWSRLFEEERGKDALPKHQPWDHKINIQPGKEPPWGPLYQMSEKELQTLREW FT LKEKLAKGWIRRSTSSAGTPCMFVPKANGKLRLVQDYRKLNEITIKNRYPLPNIEEAQD FT RLTGSDWYTKIDLRDAFYAIRMAEGEEWKTAFRTRYGLYEFLVMPMGLTNAPASCQDLV FT NETLRDLLDVCVVAYMDDILVYTKGSLQEHTKQVQDVFERLTKSGFKTAPEKCEFHKKE FT VKFLGFIISTTGITIDPAKTQSIREWPEPKTVKDVQSFLGLANYNRKFIKDYSKTAAPM FT TMLTRKDVNWKWGKEQTEAFKRLKEQCASAPTLRLFDGSKEVHIETDASDMAIGACLTQ FT THDGKRHPVAYYSRKMTTAEQNYDIHDKELLAIVAAMQHWRVYVEGPPKLTILSDHKNL FT TYFTTTKELTRRQARWSELLGQYKFEIKYTPGTENGPADALSRRSDYMEGKEPVQHKIL FT KTNPDGSLSANTREFNNIVRILSDKEEQFPISQGKYQVPKDREEECIRQHHDEPTYGHP FT GTSKTVDLIQRSFSFPQMRLKVLRYIKKCVHCQQNKAARHAKYGHLQFRTPPTKPWDEV FT TMDFITKLPRSKDRVTGQAYDMILVMVDRLTKYAHFIPASEIYTAEQLGYLVLDRLIRY FT HGFPEVFITDRDKLFTSNYWKTLMGTIGIKHKLSTAYHPETDGQTERTNQTLEQYLRHY FT INYAQDNWVSLLPMAQIALNNHKSETTSTTPFMRTLARTLTYPEHLDPTHRPREQS" FT CDS 5560..6057 FT /product="env homologue" FT /db_xref="GOA:V9H131" FT /db_xref="InterPro:IPR000953" FT /db_xref="InterPro:IPR016197" FT /db_xref="InterPro:IPR023779" FT /db_xref="InterPro:IPR023780" FT /db_xref="UniProtKB/TrEMBL:V9H131" FT /protein_id="CAA77892.1" FT /translation="MAPLLKEGDKVYLLTKNLKTRRQTKKLDHVKVGPFFIDKVVGPVN FT YRLRLPPDAKIHPVFHISKLEPADAETPCQESFHFEPEAENEFEVEKILDKKGQRYLVK FT WKGYDESENTWEPRINLANCYQLLRQFQKWRQDSRKQEAQERRASPDQTRSRPKYPHAR FT TK" FT repeat_region 6657..7083 FT /rpt_type=LONG_TERMINAL_REPEAT XX SQ Sequence 7396 BP; 2302 A; 1913 C; 1794 G; 1387 T; 0 other; taagagacgg taatagacta tagtaaggag cttaagatat cggtatacgc actagataaa 60 caatagctag ctatataccc ttatatattg ttacccgtaa taatataata tagtgttacg 120 gatcggacac gaccgaagga gcgtcagcca atcaatagcc cgcactaatg acaggcgcgg 180 cccacagcta ggcgggcaca gccgctgcag agtgcctgga gtgcctggag tgcctggagt 240 gcctacggac ttaggcacag taggcacgat aggcacggta ggcacaggaa aggaatggaa 300 tttcctttgt atttaggaac gcatcgtacc cttatggttc gaggcgttca actcactgtt 360 caatatcact gtttggaata caccacaacc caacctctgc ctcactgctg cttggtcttt 420 acaagacgag acagctactg cttcatcact ctccctcacc ttccatcggc cacgagacaa 480 aacccgattg agcttggtct tctgatcttg tgatatcatt aggttatacc aaacctaaca 540 gctttgaacg ccctcaacga tgggagatcg acagagtgac cggggaacac ccgcccccag 600 tgaagcaagc agagcccgac gacctcagac cgcgaacgat gctatcaatg ccttggctac 660 tcatacaggc aacgaatcct caaggttggc aaccagagtt cttctatggc gaccgagtca 720 agttcgacac ttgggtctct cagatggata tgtacttctt gttcaactcc atgactgaga 780 acctcaagcc tatctttgcc accaccttct tgagaggacg agcacagcat tgggtcaaac 840 cattccttag gaaatacctg gatagcaacg gagaagacaa tgctgacgga gtcttcaagt 900 cttacaacca tctcaagcat gctatgaaga gcgtctttgg tgtctcgaac gagattgcca 960 ctgccgttcg tgttattcag cacttgactc agaagacttc cacagccgaa tatgctgcca 1020 agttccagga atacgcgcaa ctcaccgatt gggacgacga agcacttcaa gtcatgtatc 1080 gaagaggact gaaggagcat gtcaaagacg agttgatgag ggacggtcgg aagatcgatg 1140 gcttaggcga cctagtccaa gtcacgatcg atcttgacga caagctctac gagagagcta 1200 tggaacgacg atacgactcc aaggtatctg gaaaggccgg atacacgcca ggctacgaca 1260 accgtaacag aggtttcaac gacaactaca acaaacccaa ggacaagccg tactacggac 1320 cacagccaat ggagctcgac gttaccgaga aaggtcgcaa gatcaggaac agcaagggga 1380 acagaagacc cccgagttca agagaaacac gaacttgcta tggatgcggc aaacctggcc 1440 acatagcaag ggactgccgc ggtaagaata tggtgcgccg cgaacagttc aacatgatgc 1500 aacgacgaac tagtaaatct gagagcagtg ttgagtctct gggagacatc gactatactc 1560 ggagagtgga ggagagagct agcaatggaa gcacggagcc tctcctggac ccctcacaag 1620 gacgaggagg atgccatggg cagcaaatgg tggtcattcc attcgagctg cagaaccagc 1680 cacgacagtt caacatgatg gcacgaagag tcgactacga aatcgagtcc gaatctcgaa 1740 atggtcacgg aagccttcat tggcgattct gttaccaaga ctcgtgtcag gttcactact 1800 ccgcgaaatc aggagcaggg tattggcctc agcaaccgcg aggaaccctg ggagcaacac 1860 ataggcaaga cgccacgctc caagaagtgg acatcgacga atcctgcttc gacgacgatg 1920 gaagcgacaa agaaaatcag gacccaggat ggaacggatc gtggtcaccg gaaccacagg 1980 aagaaagtca agaaaccacc gggctggata ccatcgagga agaccaggat ccggaagaat 2040 caagcgaaga agattcctcc gaaggagaag agagcgacac tgacgacgac aacgaacaaa 2100 tgaccttcac cgtagacgca ccgaagaagc tctacgacat gataattcac ctgcaacgaa 2160 ggcatgaaga attcctaccg aggataggcg gacgacgaat gctacactcc attgagtttg 2220 acaagacact cgacacccta cgaggcatgg cctggggata cccactcatg gaaacgaccg 2280 aaaacctagc aactgctgtc acagagcgac cgccgatagg aagtagaatg ataggtaccg 2340 gatacctcac accgtcagga acattcgtat caaacgaatt gcgcaacatg gtgcagcacg 2400 cacgcgcact ctactcagaa acgcagaaga tccaggaacg tcatcgagta cagatgtgga 2460 cacagaaagg ctcgcgccag gttcaagcgg aggcctcgag acacgaagca cgacgttcca 2520 catacgaaca gggaaaagga tcaactcccc aggaatgagc gaccgaaggg agttatgcaa 2580 cacagaaaag gctcaagcat caccaacgac aacagtgttt cgaaccaaga ttatcgtcaa 2640 cgggcacaag acagatgcca tgatagattc cggagcgagc gggaattttg cctccgaatc 2700 atttgttaca agaaacagga tcgctacctg taagaagaaa gagggttatg aattgatcgc 2760 ggtagacgga tcatccttac ccagcgtgga gcgcgagacg ataccgctac cacttgctat 2820 ccaacggcac cacgaggaga ttaccttgga tgttactgat atggccagtc atgacatcgt 2880 actaggtatg ccttggttga gaaagcacaa cccagtaatc gactggagaa gaggagtact 2940 cacatttagg gaatgcgaat gcgttatcga cattcagcct gcgcagtggc agcgttcact 3000 ggcagatgag gcaaggaaac agctcaacag gatacagctt gcgccgacta gaaggacaga 3060 agaaccacct tcgaccggga cagacactgg cgtggggccg ccgggtcacg aagtcactgg 3120 aagtgatgga agtaacgcac catcgaagga taccaacatc tcagagttga gtattcccaa 3180 ggagtatcgc aagtggtcgc gactctttga agaggaaaga ggcaaggacg ccttacctaa 3240 gcaccaacca tgggatcaca agataaacat tcagccaggg aaagagcctc catggggacc 3300 cctatatcaa atgtctgaga aagagctaca gaccctacga gaatggctga aggagaagct 3360 agccaaagga tggatacgac gatccacctc aagtgcagga actccatgca tgttcgttcc 3420 aaaagcaaac gggaaactac gactcgtaca agactaccga aagttgaacg agatcacgat 3480 caagaaccga tatccgctac ccaacatcga agaagcacaa gacagattaa ccggatcaga 3540 ctggtacacg aagattgacc tacgagacgc cttctatgct atccgaatgg cagaaggaga 3600 agaatggaaa accgctttca ggacaagata cggactctac gaattcttgg tcatgccaat 3660 gggattgacc aacgcacccg catcctgcca ggaccttgtc aacgaaacac ttagagacct 3720 actcgacgtg tgcgtcgttg cttacatgga cgacatactg gtctacacaa aaggatccct 3780 ccaggaacat accaagcaag ttcaagatgt gttcgaacga ctcacgaagt ccggattcaa 3840 gacagcaccc gagaaatgcg aattccacaa gaaagaagtc aagtttttag gctttatcat 3900 cagtacaaca gggataacga tcgaccctgc aaagacacag tcaatcagag aatggccaga 3960 accgaagaca gtcaaggatg tacagtcatt ccttggactc gccaactaca accggaaatt 4020 cattaaggac tattcaaaga cagcagcacc aatgacgatg cttacaagaa aagacgtcaa 4080 ctggaaatgg ggaaaagaac agaccgaagc gttcaaaaga ctcaaggaac agtgcgcttc 4140 agccccaacg cttcgactat tcgatggtag caaggaagtc cacatcgaga ccgacgcgtc 4200 tgatatggca ataggcgcat gtctaacaca gacacacgat gggaaaagac acccagtggc 4260 ctattattcc cggaaaatga ccacagcgga acagaactac gacatccatg acaaggagct 4320 tctagccatt gttgccgcca tgcaacattg gagagtgtac gtcgagggcc caccgaagtt 4380 aacgattctt tcagaccaca agaatctcac gtacttcacg acgacgaagg aacttacccg 4440 aagacaagcc cgctggtcgg agctgcttgg gcagtacaag ttcgaaatca aatacactcc 4500 aggaacagag aacggcccgg cagatgcgct gagccgaaga agcgattaca tggaaggaaa 4560 agaaccagtg caacacaaaa tacttaagac aaaccccgac ggaagtctta gtgccaacac 4620 gagagagttc aacaacattg tacgaatcct aagcgacaag gaagaacagt tccctatatc 4680 gcaaggaaag taccaagtac caaaggatcg agaagaagaa tgcatacgac aacatcacga 4740 cgagccaaca tacggacatc ctggaacttc aaagacagtc gacctaatac agcgcagctt 4800 ctcattccca cagatgagac ttaaggtgct acgctacatc aagaaatgcg tacactgcca 4860 acaaaacaaa gctgcacggc acgcgaaata cggtcaccta cagttcagga caccaccaac 4920 gaaaccatgg gacgaggtta cgatggactt cattacgaaa ctcccgaggt caaaggatcg 4980 agtcacagga caagcctatg acatgatact agtcatggtc gacagactca caaaatatgc 5040 acacttcatt cctgcatcag aaatatacac tgcagagcag ctcggatacc tcgtactgga 5100 cagattgatc cgatatcacg gattcccgga agtattcatt acagacagag acaagctctt 5160 cacatcaaac tactggaaga cgctcatggg aacgattgga atcaagcaca agttgtcaac 5220 agcataccat ccagagacgg atgggcaaac ggaaagaacg aaccagacac tcgagcaata 5280 cctacggcac tacatcaact acgcacaaga caactgggtt tcattactgc caatggcgca 5340 gatcgcactg aacaaccaca aatcagagac aacttcgacg acgccattta tgcgaacttt 5400 ggcaaggacc ctaacctatc cggaacacct ggatcccacc cacaggccga gagagcaatc 5460 gtgacgacgg aaactctcaa ggaagtgcac aaagaagcac gcaaggcgat cgaagatgca 5520 caacaaagac tgtctcaacg acggcaagac gagagaaaaa tggcacctct gctaaaagag 5580 ggggataagg tctatctcct cacaaaaaac ctgaagacaa gaagacagac caagaaactg 5640 gatcacgtta aggtcggacc attttttatc gacaaagtcg taggaccagt caactaccga 5700 ctacgactac cacctgatgc gaaaatccac ccggtcttcc atatctccaa gttggaacca 5760 gcggacgccg aaacaccttg ccaggagagc ttccatttcg agccggaagc agaaaacgaa 5820 tttgaagtcg aaaaaatcct agacaagaag ggtcagcgat accttgtcaa atggaaagga 5880 tacgacgaat cagaaaatac ctgggaacca agaattaatc tggcgaactg ctaccagctt 5940 ctgcgacagt tccagaagtg gcgccaagat tcccggaaac aagaagctca ggaacggaga 6000 gcaagtccgg atcagaccag aagtcgtccg aaataccctc acgcaaggac caagtaggag 6060 gggaaagaga cagcgaggga cctgggacca cgtcttcgtc cggaagctcc atgagggcag 6120 cctcctccac tgcgatcgcc tcggtctctc gacgctctag aagctccagc tccctttgga 6180 gacgggcctt cttctcccaa gcggcggcct cttcctcctg tatcctccgg cgcacgacct 6240 cttcttcctg tatccttcga agcgaagcct cgtatgcttc attaagctcc cgcatctttc 6300 gacgatgctc cgacaccttt ttctcgagag cctcgcgctg acggcgcaga cgcgaccatt 6360 ccgcctctgt aaccttgaca ttacagtcgc gacgattttc ctttgtacag acaccacacc 6420 gaccagaccc gacatggaca cgacagacga cttcgtctcg cgacagtgga gacagggacg 6480 aaccatgatt tcgcccaggg cttcgatttt ctcggattga cgaatgcgac gttcggtgct 6540 ggaaggtttc agcttgggca tgttgaagga aagaagagag ccatgacgac cgctcaaccc 6600 aaggaaacct cgattattca taagctcggg acgagctaag ctagagaggg gatggtgtta 6660 cggatcggac acgaccgaag gagcgtcagc caatcaatag cccgcactaa tgacaggcgc 6720 ggcccacagc taggcgggca cagccgctgc agagtgcctg gagtgcctgg agtgcctgga 6780 gtgcctacgg acttaggcac agtaggcacg ataggcacgg taggcacagg aaaggaatgg 6840 aatttccttt gtatttagga acgcatcgta cccttatggt tcgaggcgtt caactcactg 6900 ttcaatatca ctgtttggaa tacaccacaa cccaacctct gcctcactgc tgcttggtct 6960 ttacaagacg agacagctac tgcttcatca ctctccctca ccttccatcg gccacgagac 7020 aaaacccgat tgagcttggt cttctgatct tgtgatatca ttaggttata ccaaacctaa 7080 catatagaaa ggctcgaggc cttatagatt ctacttctac ctctctcttt cttgactaga 7140 aatttatacg caaatacata atacccctaa tccctttgac gtaaagccga cgactaatac 7200 taggagatag aacggctact acacggcaga ttatatacgc ggcccttata gacgtagtta 7260 tcggcgatta ttacgagcaa atgttatact acgtcaccga cctcgaatat aatatcgtct 7320 ttagcctacc gtagcttata gcgtataacc taaacatctt ctaggagata ggcgaggtgg 7380 catttagatc tgcagc 7396 //