ID Y18371; SV 1; linear; genomic RNA; STD; VRL; 2104 BP. XX AC Y18371; XX DT 11-DEC-1998 (Rel. 58, Created) DT 14-NOV-2006 (Rel. 89, Last updated, Version 4) XX DE Citrus tristeza virus defective RNA, strain T32 XX KW defective variant. XX OS Citrus tristeza virus OC Viruses; Riboviria; Closteroviridae; Closterovirus. XX RN [1] RX PUBMED; 10092024. RA Ayllon M.A., Lopez C., Navas-Castillo J., Mawassi M., Dawson W.O., RA Guerri J., Flores R., Moreno P.; RT "New defective RNAs from citrus tristeza virus: evidence for a RT replicase-driven template switching mechanism in their generation."; RL J. Gen. Virol. 80:817-821(1999). XX RN [2] RP 1-2104 RA Moreno P.; RT ; RL Submitted (05-NOV-1998) to the INSDC. RL P. Moreno, Instituto Valenciano de Investigaciones Agrarias, Apartado RL Oficial 46113 Moncada, Valencia, SPAIN XX DR MD5; 618539eebdc28739946888c55b2a6f3f. DR RFAM; RF00193; CTV_rep_sig. XX FH Key Location/Qualifiers FH FT source 1..2104 FT /organism="Citrus tristeza virus" FT /host="citrus" FT /strain="T32 from Spain" FT /mol_type="genomic RNA" FT /note="CTV(T32) D-RNA 2.1 kb" FT /db_xref="taxon:12162" FT 5'UTR <1..108 FT variation 77 FT /replace="c" FT /note="in full length T32" FT variation 83 FT /replace="c" FT /note="in full length T32" FT variation 89 FT /replace="g" FT /note="in full length T32" FT CDS 109..195 FT /note="ORF" FT /db_xref="InterPro:IPR022108" FT /db_xref="UniProtKB/TrEMBL:Q9YN93" FT /protein_id="CAA77150.1" FT /translation="MTKLGASFKSSTFAVRSDYIISRIWRAL" FT variation 112 FT /replace="t" FT /note="in full length T32" FT variation 140 FT /replace="t" FT /note="in full length T32" FT variation 178..180 FT /replace="cc" FT /note="in full length T32" FT variation 309 FT /replace="t" FT /note="in full length T32" FT variation 653 FT /replace="c" FT /note="in full length T32" FT variation 735 FT /replace="t" FT /note="in full length T32" FT variation 832 FT /replace="g" FT /note="in full length T32" FT variation 1114 FT /replace="c" FT /note="in full length T32" FT variation 1197 FT /replace="g" FT /note="in full length T32" FT variation 1284 FT /replace="c" FT /note="in full length T32" FT misc_feature 1373..1374 FT /note="junction site" FT /experiment="experimental evidence, no additional details FT recorded" FT variation 2075 FT /replace="c" FT /note="in full length T32" XX SQ Sequence 2104 BP; 461 A; 532 C; 557 G; 554 T; 0 other; aatttcgatt caaattcacc cgtacctccg gagctcgatc cggaccctgc gggacttggt 60 gtaaatccca accagatggt tgttctacac ccataatatc aatacaacat gacgaaactc 120 ggagctagct tcaagtcctc gactttcgct gtacgcagcg attacataat ttcgcgcatc 180 tggcgcgccc tttaataccg ttggagtcct gcacttcttc ggcactgata caaccactac 240 ggtggttaag gagttttcgg ctgctgggcc gatcgtccct ttacggaaat cctgttttcc 300 gttctctgct cgcgctgctg ttcgcgcgat taaagctgcc ggacgtccta ttgacgctcc 360 gcgctccgga tgcctctgtg gcctccctgt tttcgacaca tctggtgtcg tgcgtccccg 420 ctctgttgcg ggcgcttgga ggtatgctct gtgtaaacct ccccttactg ctgccgccaa 480 gaagtccatt cgcaaggcga agaaagattc tgcattcttt ctcagccggg cttcttctct 540 cttctctcgg gaagtcccct gcggcacgcg tcacagactt cgcaggcgtg ttgcgaaact 600 agttgaccct actgtgcgtg aaagtcccca agacaagact aaacttaagg ggtgccgata 660 tggcaaaaat tctgacctcc cgtatatggg ggaagcggcg ttggatgaca tccttcgctg 720 gattgagggg gtaaatcctc cgccgtcgat ggtcgccgtt ccggtgccca tctcttttgg 780 cactctgccc actacggctt ggtgctctga ggccgacgcc gctgttctgc gatgtcgctt 840 agactatcac gccgctgcga cttcctttcg taatgaaggg aagcacgtga gatacgtcta 900 taatgacgtg tcttccgctg ccaaccgtcc tcgtacggtt tctccccgca agtgcgggcg 960 tatttttccc agcggttctg cgctgggtgt tgaggttcca agtactaggg accgccacac 1020 cgctttcgtg agatctactc acgctagcgt tttcttttct gacgcggttc gccgcgttcg 1080 aatgttccgt cctgggcgga ataatttctt tactagcgtc gtcagtgggc ggcgcgttag 1140 ttactttaga cccggaccta acggtacggt gtctgttcta atgtcggatg gcgtcaatac 1200 ggcgcgtctc gacgttgtcg ctcccgcgta ctatgcgtac gcaaaaacgt tgggcgccag 1260 agtgcgctgt ttgtgggagt cgttcgattt ggacgatgct aaaatacgtg acggtcaatg 1320 ctacattcgt cacgtgtacg acgtggccct atattttggg aggcgcgtcg acctcgcttt 1380 cgcgcaagaa taataggagt gtgcgtggat tgtggtagaa aacacgacaa ggcgctcaag 1440 actgaacgta agtgtaaggt caacaatacg caatctcaga acgaggtggc gcatatgttg 1500 atgcacgatc ccgttaagta tttgaacaaa agaaaggcta gagccttttc taacgcagag 1560 atgtttgcga ttgaattggt tttgtacacc aaggaaaggc aattggcggt cgatttagcc 1620 gctgaaaggg agaagacgag actggctcgt agacacccaa tacgttctcc ggaagaaact 1680 ccggaacatt ataaattcgg tatgactgct aaggcaatgt taccggacat caacgccgta 1740 gacgttggtg ataacgagga aacttcgtcg gagtacccag tgagtctgag tgtttctggc 1800 ggagttctcc gtgaacacca cttcatctga ttgaagtgga cggaataagt tccttgcgga 1860 actttaagtc gggttggtaa aaacccttta tgatggtgat gtatcactag acaataaccg 1920 gatgggtaaa gtctttaaaa tgatcgaggg gaaaattaac cgtatcctct cgttggtcta 1980 agctcccaca gagtggtagt ggtctcaagt gaggcttaac gtatgcgtga accaaagaag 2040 ttctccttag agtgtgtgtt gtttacccaa cacattgtcc ctatgggggg ccaacatagg 2100 tcca 2104 //