ID   Y18370; SV 1; linear; genomic RNA; STD; VRL; 1968 BP.
XX
AC   Y18370;
XX
DT   11-DEC-1998 (Rel. 58, Created)
DT   14-NOV-2006 (Rel. 89, Last updated, Version 4)
XX
DE   Citrus tristeza virus defective RNA, strain T318
XX
KW   defective variant.
XX
OS   Citrus tristeza virus
OC   Viruses; Riboviria; Closteroviridae; Closterovirus.
XX
RN   [1]
RX   PUBMED; 10092024.
RA   Ayllon M.A., Lopez C., Navas-Castillo J., Mawassi M., Dawson W.O.,
RA   Guerri J., Flores R., Moreno P.;
RT   "New defective RNAs from citrus tristeza virus: evidence for a
RT   replicase-driven template switching mechanism in their generation.";
RL   J. Gen. Virol. 80:817-821(1999).
XX
RN   [2]
RP   1-1968
RA   Moreno P.;
RT   ;
RL   Submitted (05-NOV-1998) to the INSDC.
RL   P. Moreno, Instituto Valenciano de Investigaciones Agrarias, Apartado
RL   Oficial 46113 Moncada, Valencia, SPAIN
XX
DR   MD5; 5e10ac9a99dec1e54e366a7d790ce6ce.
DR   RFAM; RF00193; CTV_rep_sig.
XX
CC   Related sequences Y16840, Y16845
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1968
FT                   /organism="Citrus tristeza virus"
FT                   /host="citrus"
FT                   /strain="T318 from Spain"
FT                   /mol_type="genomic RNA"
FT                   /note="CTV(T318) D-RNA 1.9 kb"
FT                   /db_xref="taxon:12162"
FT   5'UTR           <1..109
FT   variation       1
FT                   /replace=""
FT                   /note="in full length T318"
FT   variation       99
FT                   /replace="a"
FT                   /note="in full length T318"
FT   CDS             110..334
FT                   /note="ORF"
FT                   /db_xref="InterPro:IPR022108"
FT                   /db_xref="UniProtKB/TrEMBL:Q9WIE2"
FT                   /protein_id="CAA77149.1"
FT                   /translation="MSKLGASFKSLTFAVRSDYIISRIWRAFNTVGVLHFFGTDTTTTV
FT                   VKEFSAAGPIVPLRKSCFPFSVRAAVRAI"
FT   variation       286
FT                   /replace="g"
FT                   /note="in full length T318"
FT   variation       332
FT                   /replace="a"
FT                   /note="in full length T318"
FT   variation       522
FT                   /replace="t"
FT                   /note="in full length T318"
FT   variation       688..691
FT                   /replace="ggggg"
FT                   /note="in full length T318"
FT   variation       734
FT                   /replace="t"
FT                   /note="in full length T318"
FT   variation       814
FT                   /replace="g"
FT                   /note="in full length T318"
FT   variation       973
FT                   /replace="g"
FT                   /note="in full length T318"
FT   variation       984..985
FT                   /replace="ggg"
FT                   /note="in full length T318"
FT   variation       1149
FT                   /replace="c"
FT                   /note="in full length T318"
FT   variation       1400..1402
FT                   /replace="cccc"
FT                   /note="in full length T318"
FT   misc_feature    1441..1444
FT                   /note="junction site"
FT                   /experiment="experimental evidence, no additional details
FT                   recorded"
FT   variation       1446
FT                   /replace="t"
FT                   /note="in full length T318"
XX
SQ   Sequence 1968 BP; 403 A; 513 C; 521 G; 531 T; 0 other;
     caatttcgat tcaaattcac ccgtacctcc ggagctcgat ccggaccctg cgggacttgg        60
     tgtaaatccc aaccagacgg ttgctctacg cccataatgt caatacaaca tgtcgaaact       120
     cggagctagc ttcaagtcct tgactttcgc tgtacgcagc gattacataa tttcgcgcat       180
     ctggcgcgcc tttaataccg ttggagtcct gcacttcttc ggcactgata caaccactac       240
     ggtggttaag gagttttcgg ctgctgggcc gatcgtccct ttacgaaaat cctgttttcc       300
     gttctctgtt cgcgctgctg ttcgcgcgat ttaagctgcc ggacgtccta ttgacgctcc       360
     gcgctccgga tgcctctgtg gcctccctgt tttcgacaca tctggtgtcg tgcgtccccg       420
     ctctgttgcg ggcgcttgga ggtatgctct gtgtaaacct ccccttactg ctgccgccaa       480
     gaagtccatt cgcaaggcga agaaagattc tgcattcttt cgcagccggg cttcttctct       540
     cttctctcgg gaagtcccct gcggcacgcg tcacagactt cgcaggcgtg ttgcgaaact       600
     agttgaccct actgtgcgtg aaagtcccca agacaagact aaacttaagg ggcgccgata       660
     tggcaaaaat tctgacctcc cgtatatggg gaagcggcgt tggatgacat ccttcgctgg       720
     attgaggggg taaatcctcc gccgtcgatg gtcgccgttc cggtgcccat ctcttttggc       780
     actctgccca ctacggcttg gtgctctgag gccaacgccg ctgttctgcg gtgtcgctta       840
     gactatcacg ccgctgcgac ttcctttcgt aatgaaggga agcacgtgag atacgtctat       900
     aatgacgtgt cttccgctgc caaccgtcct cgtacggttt ctccccgcaa gtgcgggcgt       960
     atttttccca gctgttctgc gctggtgttg aggttccaag tactagggac cgccacaccg      1020
     ctttcgtgag atctactcac gctagcgttt tcttttctga cgcggttcgc cgcgttcgaa      1080
     tgttccgtcc tgggcggaat aatttcttta ctagcgtcgt cagtgggcgg cgcgttagtt      1140
     actttagatc cggacctaac ggtacggtgt ctgttctaat gtcggatggc gtcaatacgg      1200
     cgcgtctcga cgttgtcgct cccgcgtact atgcgtacgc aaaaacgttg ggcgccagag      1260
     tgcgctgttt gtgggagtcg tccgatttgg acgatgctaa aatacgtgac ggtcaatgct      1320
     acattcgtca cgtgtacgac gtggccctat attttgggag gcgcgtcgac ctttctgtgc      1380
     gccgcacttt gggtttattc ccacagtggg tgcgttaaag gcttatcttg ttcgcgagta      1440
     tggttttgta caccaaggaa aggcaattgg cggtcgattt agccgctgaa agggagaaga      1500
     cgagactggc tcgtagacac ccaatacgtt ctccggaaga aactccggaa cattataaat      1560
     tcggtatgac tgctaaggca atgttaccgg acatcaacgc cgtagacgtt ggtgataacg      1620
     aggaaacttc gtcggagtac ccagtgagtc tgagtgtttc tggcggagtt ctccgtgaac      1680
     accacttcat ctgattgaag tggacggaat aagttccttg cggaacttta agtcgggttg      1740
     gtaaaaaccc tttatgatgg tgatgtatca ctagacaata accggatggg taaagtcttt      1800
     aaaatgatcg aggggaaaat taaccgtatc ctctcgttgg tctaagctcc cacagagtgg      1860
     tagtggtctc aagtgaggct taacgtatgc gtgaaccaaa gaagttctcc ttagagtgtg      1920
     tgttgtttac ccaacacact gtccctatgg ggggccaaca taggtcca                   1968
//