ID   Y18369; SV 1; linear; genomic RNA; STD; VRL; 1970 BP.
XX
AC   Y18369;
XX
DT   11-DEC-1998 (Rel. 58, Created)
DT   14-NOV-2006 (Rel. 89, Last updated, Version 4)
XX
DE   Citrus tristeza virus defective RNA, strain T317
XX
KW   defective variant.
XX
OS   Citrus tristeza virus
OC   Viruses; Riboviria; Closteroviridae; Closterovirus.
XX
RN   [1]
RX   PUBMED; 10092024.
RA   Ayllon M.A., Lopez C., Navas-Castillo J., Mawassi M., Dawson W.O.,
RA   Guerri J., Flores R., Moreno P.;
RT   "New defective RNAs from citrus tristeza virus: evidence for a
RT   replicase-driven template switching mechanism in their generation.";
RL   J. Gen. Virol. 80:817-821(1999).
XX
RN   [2]
RP   1-1970
RA   Moreno P.;
RT   ;
RL   Submitted (05-NOV-1998) to the INSDC.
RL   P. Moreno, Instituto Valenciano de Investigaciones Agrarias, Apartado
RL   Oficial 46113 Moncada, Valencia, SPAIN
XX
DR   MD5; 5227102c68aea77d5042d20d2a38f93e.
DR   RFAM; RF00193; CTV_rep_sig.
XX
CC   Related sequence Y16841
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1970
FT                   /organism="Citrus tristeza virus"
FT                   /host="citrus"
FT                   /strain="T317 from Spain"
FT                   /mol_type="genomic RNA"
FT                   /note="CTV(T317) D-RNA 1.9 kb"
FT                   /db_xref="taxon:12162"
FT   5'UTR           <1..108
FT   variation       77
FT                   /replace="c"
FT                   /note="in full length T317"
FT   variation       96
FT                   /replace="a"
FT                   /note="in full length T317"
FT   CDS             109..333
FT                   /note="ORF"
FT                   /db_xref="InterPro:IPR022108"
FT                   /db_xref="UniProtKB/TrEMBL:Q9YN94"
FT                   /protein_id="CAA77148.1"
FT                   /translation="MSRLGASFKSLTFAVRSDYIISRIWRAFNTVGVLHFFGTDTTTTV
FT                   VKEFSAAGPIVPLRKSCFPFSVRAAVRAI"
FT   variation       116
FT                   /replace="a"
FT                   /note="in full length T317"
FT   variation       328
FT                   /replace="t"
FT                   /note="in full length T317"
FT   variation       331
FT                   /replace="a"
FT                   /note="in full length T317"
FT   variation       410
FT                   /replace="t"
FT                   /note="in full length T317"
FT   variation       967
FT                   /replace="c"
FT                   /note="in full length T317"
FT   variation       1113
FT                   /replace="c"
FT                   /note="in full length T317"
FT   misc_feature    1443..1446
FT                   /note="junction site"
FT                   /experiment="experimental evidence, no additional details
FT                   recorded"
FT   variation       1502
FT                   /replace="a"
FT                   /note="in full length T317"
XX
SQ   Sequence 1970 BP; 399 A; 513 C; 527 G; 531 T; 0 other;
     aatttcgatt caaattcacc cgtacctccg gagctcgatc cggaccctgc gggacttggt        60
     gtaaatccca accagatggt tgctctacgc ccatagtatc aatacaacat gtcgagactc       120
     ggagctagct tcaagtcctt gactttcgct gtacgcagcg attacataat ttcgcgcatc       180
     tggcgcgcct ttaataccgt tggagtcctg cacttcttcg gcactgatac aaccactacg       240
     gtggttaagg agttttcggc tgctgggccg atcgtccctt tacggaaatc ctgttttccg       300
     ttctctgttc gcgctgctgt tcgcgcgatt taagctgccg gacgtcctat tgacgctccg       360
     cgctccggat gcctctgtgg cctccctgtt ttcgacacat ctggtgtcgc gcgtccccgc       420
     tctgttgcgg gcgcttggag gtatgctctg tgtaaacctc cccttactgc tgccgccaag       480
     aagtccattc gcaaggcgaa gaaagattct gcattctttc tcagccgggc ttcttctctc       540
     ttctctcggg aagtcccctg cggcacgcgt cacagacttc gcaggcgtgt tgcgaaacta       600
     gttgacccta ctgtgcgtga aagtccccaa gacaagacta aacttaaggg gcgccgatat       660
     ggcaaaaatt ctgacctccc gtatatgggg gaagcggcgt tggatgacat ccttcgctgg       720
     attgaggggg taaatcctcc gccgtcgatg gtcgccgttc cggtgcccat ctcttttggc       780
     actctgccca ctacggcttg gtgctctgag gccgacgccg ctgttctgcg gtgtcgctta       840
     gactatcacg ccgctgcgac ttcctttcgt aatgaaggga agcacgtgag atacgtctat       900
     aatgacgtgt cttccgctgc caaccgtcct cgtacggttt ctccccgcaa gtgcgggcgt       960
     attttttcca gcggttctgc gctgggtgtt gaggttccaa gtactaggga ccgccacacc      1020
     gctttcgtga gatctactca cgctagcgtt ttcttttctg acgcggttcg ccgcgttcga      1080
     atgttccgtc ctgggcggaa taatttcttt actagcgtcg tcagtgggcg gcgcgttagt      1140
     tactttagac ccggacctaa cggtacggtg tctgttctaa tgtcggatgg cgtcaatacg      1200
     gcgcgtctcg acgttgtcgc tcccgcgtac tatgcgtacg caaaaacgtt gggcgccaga      1260
     gtgcgctgtt tgtgggagtc gtccgatttg gacgatgcta aaatacgtga cggtcaatgc      1320
     tacattcgtc acgtgtacga cgtggcccta tattttggga ggcgcgtcga cctttctgtg      1380
     cgccgcactt tgggtttatt ccccacagtg ggtgcgttaa aggcttatct tgttcgcgag      1440
     tatggttttg tacaccaagg aaaggcaatt ggcggtcgat ttagccgctg aaagggagaa      1500
     ggcgagactg gctcgtagac acccaatacg ttctccggaa gaaactccgg aacattataa      1560
     attcggtatg actgctaagg caatgttacc ggacatcaac gccgtagacg ttggtgataa      1620
     cgaggaaact tcgtcggagt acccagtgag tctgagtgtt tctggcggag ttctccgtga      1680
     acaccacttc atctgattga agtggacgga ataagttcct tgcggaactt taagtcgggt      1740
     tggtaaaaac cctttatgat ggtgatgtat cactagacaa taaccggatg ggtaaagtct      1800
     ttaaaatgat cgaggggaaa attaaccgta tcctctcgtt ggtctaagct cccacagagt      1860
     ggtagtggtc tcaagtgagg cttaacgtat gcgtgaacca aagaagttct ccttagagtg      1920
     tgtgttgttt acccaacaca ctgtccctat ggggggccaa cataggtcca                 1970
//