ID Y17738; SV 2; linear; mRNA; STD; VRL; 4475 BP. XX AC Y17738; XX DT 08-JAN-1999 (Rel. 58, Created) DT 18-APR-2005 (Rel. 83, Last updated, Version 6) XX DE Sugarcane streak mosaic virus partial mRNA for polyprotein, isolate Andhra DE Pradesh XX KW coat protein; polyprotein. XX OS Sugarcane streak mosaic virus OC Viruses; Riboviria; Potyviridae; Poacevirus. XX RN [1] RX DOI; 10.1007/s007050050519. RX PUBMED; 10226614. RA Hema M., Joseph J., Gopinath K., Sreenivasulu P., Savithri H.S.; RT "Molecular characterization and interviral relationships of a flexuous RT filamentous virus causing mosaic disease of sugarcane (Saccharum RT officinarum L.) in India"; RL Arch. Virol. 144(3):479-490(1999). XX RN [2] RC revised by [3] RA Hema M.; RT ; RL Submitted (09-JUL-1998) to the INSDC. RL M. Hema, Sri Venkateswara University, Department of Virology, Tirupathi - RL 517 502, Andhra Pradesh, INDIA XX RN [3] RP 1-4475 RA Hema M.; RT ; RL Submitted (20-MAR-2002) to the INSDC. RL M. Hema, Sri Venkateswara University, Department of Virology, Tirupathi - RL 517 502, Andhra Pradesh, INDIA XX DR MD5; f60034941b3ffc863a4033148bae6b0e. XX CC Related sequence U75456 XX FH Key Location/Qualifiers FH FT source 1..4475 FT /organism="Sugarcane streak mosaic virus" FT /host="Sugarcane" FT /lab_host="Sorghum bicolor cv. Rio" FT /isolate="Andhra Pradesh" FT /mol_type="mRNA" FT /db_xref="taxon:53954" FT CDS <1..4264 FT /codon_start=2 FT /product="polyprotein" FT /db_xref="GOA:Q9YNB1" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR001592" FT /db_xref="InterPro:IPR001730" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR013648" FT /db_xref="UniProtKB/TrEMBL:Q9YNB1" FT /protein_id="CAA76842.3" FT /translation="QLPIPFYSNDFAVPFYIALGHITAEAIKPRSFTVRLPVPNVKKAV FT LRLSTSEAQVDRTIGILQVRLQQIRERLGQIQHTTSWTAGLRLTNLFNTVLHKSTSQSE FT KSLQASLILGNRTLIITWRLLALRKMIRSSRKLLANNPMLSECLIYHGGQEAFLEQYLF FT PTFKHPIKAYLVAIACLTVGVGCLGYYYLKRRETLIMHAGKKRRTHAREDRYKRTGLMG FT QDEASYHWVGSEKDIIDDWGAAYARKNAGKKKPSDWDDGKQQWDSREGTYTNVFKTLYD FT LDPTKFKYVVAEAPGYRFKKKLNRQEKKRLSETIIEGIRSQMASEGIYDYPEVTQATLY FT LFGDPGQPAKKVILTPHNPLAVSQGSGNPVGFPSNRGELRQTGAAMEMTEEERQRALAN FT ETIVMHAQARIDISHVEKNVGLISDGSYTSQCFITQSWCVAPYHLASYFKQTNNTLTIT FT TTSGHYTLPRPLVHKILNHDLVIFKMPGDFPPMKKISCLRKPNLDDEVVLITTKRTPSG FT LRTTFSSSFYISEHHSGMMQYALKSVPGFCGGPIMSIKDGQIIGFHSAARVVNMQDKGS FT TFTCVNDEVLEVLQSESSQALIPWLFNEEMVQWKGVNSNLDPRNFPIAKTHTELIFHGA FT EIQHGTDKYFGDNLTIQGRINQSFNNRHVIKGSDTYFDEFVMHVRPAPDRVDAHLPSDL FT SVEAFFKDFLKYATPVELGRVDLGCLASAVDKVINHLEDQGFVAHEFQVETNFYTLLNS FT MNLDTAMGALYQTKKRDVLVPATHEELSTWFTDSLTNLYNGKFGIWKASLKAELRPVEK FT VQQHKTRVFTAAPFDVSFGAKAFVDGFNNKFYERQAGSHWTVGINKFNCGWDELARRFN FT HDWKFIDADGSRYDSSLTPLLFNCVLHIREHFMDLDSDEKRCLRNLYTQLVWTPVSTIT FT GQIVKKCKGGPSGQPSTVVDNTLMLMIAVEYSKLRTKIADSELNYTCNGDDLLLNASLD FT TCTKIRESFTETMKDLGLTYEFDVEVDNIGQVEYMSHKWLNACGMLIPKLSRERIMSIL FT RWNRSFDLESQANKINAAWIESFGYADIMDFVHEYANWWSKHTGKEGFLMDIDKVTALY FT LTDEVRIDPVPTDLLVSSRVETLVFHATVDGQGTQPPQNQSSSPATTSSISSTTTSQVD FT SQTTGNLSNTVSQTMRSLYVPPLVKSLKTEAKAKQMMRYTPPQALISSSAASIRQFNDW FT ANTAAEGYGKTIQQFTDELLPFWIYWCVVNGATEENKTKPKWTKAVLNLDGADGTEITV FT DENGPQVEFEMGPMYRNAKPGIRAIMRHFGELAYKWVQFSVRSGKPIIPHNAVEAGLTT FT PEFYPCCIDFVMVNILSPAEIDVRNQVINARTPRMGRPLFRHALRAGGDEDTDLRREDD FT AHYGRTQIGGAQFGRAQH" FT mat_peptide 3413..4264 FT /product="coat protein" FT 3'UTR 4265..4454 FT polyA_site 4455 XX SQ Sequence 4475 BP; 1389 A; 919 C; 1029 G; 1138 T; 0 other; acaacttcct attccgttct attcaaatga ttttgccgtc ccgttttaca tcgctcttgg 60 acatataaca gcggaagcaa ttaagcctcg atctttcaca gttcgactac cagttcccaa 120 tgtgaagaaa gctgttctac gattgtcaac gtctgaagca caagtcgacc gaacaattgg 180 gatactgcag gttcgactcc aacagattcg tgaacgatta ggacaaattc aacacactac 240 gagctggacg gcagggttaa gattaacaaa cttattcaat accgtgttac acaagagcac 300 aagtcagagc gagaaatcac ttcaagcatc gttaattctt gggaacagaa ctcttatcat 360 cacttggaga ttgctcgcgc tgagaaaaat gataaggagc tcgaggaaat tactagccaa 420 taaccctatg cttagtgagt gtttaattta tcatggtggg caggaagctt tcttagagca 480 atacttattc ccaacattta aacatccgat caaagcatat cttgttgcta ttgcctgtct 540 cactgttggg gtgggttgtc tcggatatta ttatcttaaa cggagagaga cactcatcat 600 gcacgcaggg aaaaagcgcc gaacacatgc tcgtgaggat cgttacaagc gaacaggact 660 tatgggacaa gacgaggcta gctatcattg ggttggtagc gaaaaggaca taattgatga 720 ttggggagca gcttatgcaa gaaagaatgc tgggaagaag aagccatctg attgggatga 780 tggaaagcag caatgggatt cacgcgaagg aacatatacg aacgtgttta aaactctgta 840 tgacttagac ccaacaaagt tcaaatatgt cgttgcagaa gcaccaggat accgatttaa 900 gaagaaattg aaccgacagg aaaagaagag gttatcggag acaataatag aagggataag 960 atctcaaatg gcttcggaag gaatctatga ctatcctgaa gtgacgcaag ctaccctgta 1020 tttatttggc gatcctggtc aaccagcaaa gaaggtgatt ctaacaccac ataatccgtt 1080 agctgtctcg cagggaagtg gaaatcctgt tggttttcct agcaatcgtg gtgaactgag 1140 acaaacagga gctgccatgg aaatgactga agaagaaaga caacgcgctt tggctaatga 1200 gacaatcgta atgcatgcac aagcgagaat agacatatca catgttgaga aaaatgttgg 1260 gctgatctct gatggttctt acacatcaca atgtttcatt acacagagct ggtgtgttgc 1320 accctaccat cttgcgagtt attttaaaca gacgaacaac acacttacga tcactacaac 1380 atctggtcat tacactctgc ctcgaccttt agtacataag attttaaatc atgacttggt 1440 cattttcaag atgcctggag atttcccacc gatgaagaag atatcatgct tgagaaaacc 1500 caatttggat gatgaagtag ttttaataac aactaaacga acaccttctg ggctgcgaac 1560 cacattttca tcatcattct acataagtga gcaccactct ggaatgatgc agtatgctct 1620 caagtcagtg ccaggatttt gtggtggacc gattatgtcg ataaaggacg ggcagatcat 1680 agggtttcat tcagcagctc gagtggtgaa catgcaagac aagggatcta cttttacatg 1740 tgtgaacgat gaagtcttag aagttttgca atcagaaagt tcacaagcac ttattccctg 1800 gttgtttaat gaagaaatgg ttcaatggaa aggtgttaat tcaaatcttg atcctaggaa 1860 tttcccaatc gcaaaaactc acacggaact tatttttcat ggagcagaaa tacaacacgg 1920 aacggataaa tattttgggg ataatcttac gattcaaggc cgaataaacc aatcattcaa 1980 taacaggcac gtcatcaaag ggtcagacac atactttgat gagtttgtta tgcatgtgag 2040 accagcaccc gatcgtgtag atgctcactt accaagtgat ttaagtgttg aggctttctt 2100 caaggacttt ctaaagtatg ccacacctgt tgaacttggc cgagtggact tgggatgttt 2160 ggctagtgcc gtggacaagg tcatcaatca tttggaagat cagggatttg ttgcacatga 2220 atttcaggtg gagactaatt tctacacact tctaaattca atgaatctcg acacggcaat 2280 gggagcactt tatcaaacaa agaaacggga tgttttagtg ccagcaactc acgaagaatt 2340 gagcacttgg ttcacagatt ctttgactaa tttgtacaac ggaaaattcg gaatctggaa 2400 agcctccctt aaagctgagc ttcgacctgt cgagaaagtg caacaacata aaaccagagt 2460 ctttacagcc gcgccttttg acgtgtcgtt tggtgccaaa gctttcgtgg acggatttaa 2520 taataaattt tacgagagac aagcaggatc ccactggacc gttggaataa acaagtttaa 2580 ttgtggttgg gatgagttgg cacgacgatt taaccacgac tggaagttca ttgacgctga 2640 tggctctcga tatgatagct cattgacacc actgcttttt aactgcgttt tacacattcg 2700 ggagcacttc atggaccttg actctgatga gaagcgatgc ttgagaaact tgtatactca 2760 gctagtttgg acaccagtct caacgatcac aggccagata gtcaagaaat gcaaaggagg 2820 accatcaggc caaccatcaa cagtcgtgga caacactctt atgcttatga tagctgttga 2880 atattcaaag cttcgaacaa aaatagctga ttcggaactc aattacacgt gcaatggaga 2940 cgaccttctg cttaacgcat cactcgacac atgtaccaag atacgcgaat cattcacgga 3000 gacgatgaaa gatcttgggc tcacctatga attcgatgtc gaggttgaca acattgggca 3060 agtcgagtac atgtcgcata agtggttaaa cgcctgtggt atgttaatcc cgaaactatc 3120 acgagaacgg ataatgagca tactgagatg gaatcgttct tttgacctag agagccaagc 3180 taataagatc aacgcggcat ggatagaatc ttttggatat gctgacatta tggattttgt 3240 tcatgagtac gctaattggt ggagcaagca cacaggaaag gagggcttcc ttatggatat 3300 tgataaagtc acagctctat atcttactga tgaagtgagg attgacccag tgcctacaga 3360 tcttttagtt tcctctagag tcgaaactct tgtgtttcat gcaacggtcg atggacaagg 3420 aacgcagcca cctcagaatc agagtagttc accagcgact acatcaagca tatcatcaac 3480 aacaacgagt caagttgata gtcagacaac agggaattta tctaatacag tctctcagac 3540 catgagatcc ctgtacgttc cgccattggt gaaatcgctc aaaacagaag ccaaggcgaa 3600 gcagatgatg aggtacacac caccacaagc tcttatctct tcatcagccg cctcaatacg 3660 acagttcaat gattgggcga atacagcagc agaaggatat gggaagacta ttcaacaatt 3720 tacagatgaa ctacttccat tctggattta ctggtgtgtt gttaacggag cgacagaaga 3780 gaacaaaacc aagcccaagt ggacaaaagc tgtgttaaat ctggatggag ctgatgggac 3840 agagataact gttgacgaaa atgggcctca agtggagttc gaaatggggc caatgtatag 3900 aaacgccaaa cctggtattc gcgcaatcat gagacatttt ggcgaattgg cgtacaagtg 3960 ggttcagttc tcggttcgta gcgggaaacc cataatacca cacaatgcag tagaggcagg 4020 attgaccaca ccagagtttt atccttgctg cattgatttt gtgatggtga acatcctctc 4080 accagcagaa attgacgtgc gtaaccaggt gatcaacgca cgcacacccc ggatgggaag 4140 gcctttattc cgtcacgcgc ttagagccgg gggagatgag gacacggacc tgcgtagaga 4200 agatgatgct cattatggaa gaacgcagat cggaggcgcc cagtttgggc gtgctcagca 4260 ctgattacca gtgcagttat ccatatatta ttgtatctac gtataaaatg gttctcttgg 4320 ataggctgat ggtagttgcc tgaccgctta gtccatcatc aggagctact ggtggatcat 4380 tcggagattg ctcaccctgt tttcagacca gtgagattct gccgaaccca caatcaacct 4440 gccccgtgag gaggaaaaaa aaaaaaaaaa aaaaa 4475 //