ID Y16627; SV 1; linear; genomic DNA; STD; VRL; 7434 BP. XX AC Y16627; XX DT 24-APR-1999 (Rel. 59, Created) DT 18-APR-2005 (Rel. 83, Last updated, Version 3) XX DE Ovine enzootic nasal tumour virus complete sequence XX KW env gene; gag gene; long terminal repeat; LTR; pol gene; PRO gene; KW R region; U3 region; U5 region. XX OS Ovine enzootic nasal tumor virus OC Viruses; Ortervirales; Retroviridae; Orthoretrovirinae; Betaretrovirus; OC unclassified Betaretrovirus. XX RN [1] RX PUBMED; 10196294. RA Cousens C.A.M., Minguijon E., Dalziel R.G., Ortin A., Garcia M., Park J., RA Gonzalez L., Sharp J.M., De las Heras M.; RT "Complete sequence of enzootic nasal tumor virus, a retrovirus associated RT with transmissible intranasal tumors of sheep"; RL J. Virol. 73(5):3986-3993(1999). XX RN [2] RP 1-7434 RA Cousens C.A.M.; RT ; RL Submitted (20-FEB-1998) to the INSDC. RL C.A.M. Cousens, University of Edinburgh, Dept of Vet Pathology R(D)SVS, RL Summerhall, Edinburgh EH9 1QH, UK XX DR MD5; a83f3da180d6c71d882eb603c399fe60. DR EuropePMC; PMC104177; 10196294. DR EuropePMC; PMC112339; 10933716. DR EuropePMC; PMC114680; 11602740. DR EuropePMC; PMC114837; 11160757. DR EuropePMC; PMC137058; 11991967. DR EuropePMC; PMC153819; 11836391. DR EuropePMC; PMC161958; 12829832. DR EuropePMC; PMC2546887; 18632865. DR EuropePMC; PMC3909617; 24150961. DR EuropePMC; PMC415799; 15140976. DR EuropePMC; PMC538734; 15596804. DR RFAM; RF01097; RF_site8. DR RFAM; RF01417; RSV_RNA. XX CC Related sequence: Y15437 XX FH Key Location/Qualifiers FH FT source 1..7434 FT /organism="Ovine enzootic nasal tumor virus" FT /host="Ovis aries" FT /isolate="sheep TNO28" FT /mol_type="genomic DNA" FT /proviral FT /db_xref="taxon:69576" FT repeat_region <1..125 FT /rpt_type=LONG_TERMINAL_REPEAT FT repeat_region 1..13 FT /note="R region" FT repeat_region 14..125 FT /note="U5 region" FT CDS 256..2097 FT /gene="gag" FT /db_xref="GOA:Q9WJ20" FT /db_xref="InterPro:IPR000721" FT /db_xref="InterPro:IPR001878" FT /db_xref="InterPro:IPR003322" FT /db_xref="InterPro:IPR008916" FT /db_xref="InterPro:IPR008919" FT /db_xref="InterPro:IPR010999" FT /db_xref="InterPro:IPR036875" FT /db_xref="InterPro:IPR038124" FT /db_xref="UniProtKB/TrEMBL:Q9WJ20" FT /protein_id="CAB41417.1" FT /translation="MGQTHSRQLFVHMLSVMLKHRGITVSKPKLINFLSFIEEVCPWFP FT REGTVNLETWKKVGEQIRTHYTLHGPEKVPVETLSFWTLIRDCLDFDNDELKRLGNLLK FT QEEDPLHDPDSENSYDAPPPPHPSLHSSRPSDNDDLLSSTDEAELDEEAAKYHQEDWGF FT LAQEKGALTSKDELVECFKNLTIALQNAGIKLPANNDKFPSAPPLPPAYAPSVVAGLDP FT PPGPLPPSKNMSPLQKALRQAQRLGEVVSDFSLAFPVFENNNQRYYESLPFKQLKELKI FT ACSQYGPTAPFTIAMIENLGTQALPPNDWKQTARACLSGGDYLLWKSEFFEQCARIADV FT NRQQGIQTSYEMLIGEGPYQATDTQLNFLPGAYAQISNAARQAWKKLPSSSTKTEDLSK FT VRQGPDEPYQDFVARLLDTIGKIMSDEKAGMVLAKQLAFENANSACQAALRPYRKKGDL FT SDFIRICADIGPSYMQGIAMAAALQGKSIKEVLFQQQARNKRGRQRSGNSGCFVCGQPG FT HRAAVCPQKQQSPVNTPNLCPRCKKGKHWARDCRSKTDVQGTPLPPVSGNWVRGQPLAP FT KQCYGATLQVPKEPLQTSVEPQEAARDWTSVPPPTQY" FT mat_peptide 1878..2855 FT /gene="pro" FT /note="likely to be expressed as gag-pro precursor by FT ribosomal frameshifting mechanism" FT mat_peptide 2825..5434 FT /gene="pol" FT /note="likely to be expressed as gag-pro-pol precursor by FT ribosomal frameshifting mechanism" FT CDS 5346..7199 FT /gene="env" FT /note="env precursor" FT /db_xref="GOA:Q9WJ21" FT /db_xref="InterPro:IPR000328" FT /db_xref="UniProtKB/TrEMBL:Q9WJ21" FT /protein_id="CAB41418.1" FT /translation="MPKHRAGFRKGWYARQRNSLTYQMQRMTLNETTNGLPTQRQVEAL FT MRHAWNEAHVQPPATPIKILIMLLLLLQRIQNGAAAAFWAYIPDPPMIQSLGWDREIVP FT VYVNDTSLLGGKSDIHISPQQANISFYGLTTQYPMCFSYQSQHPHCIQVSADISYPRVT FT ISGIDEKTGKRSYRNGTGPLDIPFCDKNLSISIGIDTPWTLCRARIASVYNINNANTTL FT LWDWAPGGTPDFPEYRGQHPPILSVNTAPIFQTELWKLLAAFGHGNSLYLQPNISGSKY FT GDVGVTGFLYPRACVPYPFMLIQGHMEITLSLNIYHLNCSNCILTNCIRGVAKGEQVII FT VKQPAFVMLPVEITEEWYDETALELLQRINTALSRPKRGLSLIILGIVSLITLIATAVT FT ASVSLAQSIQAAHTVDSLSYNVTKVMGTQEDIDKKIEDRLSALYDVVRVLGEQVQSINF FT RMKIQCHANYKWICVTKKPYNTSDYPWDKVEKHLQGIWFNTNVSLDLLQLHNEILDIEN FT SPKATLNIADTVNNFLQNLFSNFPSLHSLWQSIIVIAIIVFIVIVVILLVPCLTRGLIK FT DFLQMRIELIHMKYRYMLQYQKLMDFVKKREGSCGGQPAEG" FT mat_peptide 5346..6479 FT /product="env SU protein" FT mat_peptide 6480..7196 FT /product="env TM protein" FT repeat_region 7172..>7434 FT /rpt_type=LONG_TERMINAL_REPEAT FT repeat_region 7172..7421 FT /note="U3 region" XX SQ Sequence 7434 BP; 2170 A; 1595 C; 1426 G; 2241 T; 2 other; gcaaggtatc agccattttg gtctgatcct ctcaacccca tcttttgcct ctcttatttt 60 cttagcgggg atgctccgtt ctctccttat acaggtgtaa cttttgtccg tgctggctgc 120 ggcaagtggc gcccaacgtg gggctcgaca gctttcctcg tcactactct tattatttga 180 acaaagtgag tatttgaatg aataagtgat ttacattaaa gaggagtagt aaggtatata 240 gttgagagta taaatatggg acaaacacat agtcgtcagt tgtttgtaca catgttgtct 300 gtaatgttaa aacatagggg aatcactgtc tctaaaccaa aattaatcaa ttttctttca 360 ttcattgagg aagtttgtcc ttggttcccc agagaaggta cggtaaattt ggaaacatgg 420 aaaaaggtag gggaacaaat tcggactcat tatactttac atggccctga gaaagttcct 480 gttgaaactt tatccttttg gacattgatt cgtgattgtt tggattttga taatgatgaa 540 ttgaaacgtt taggaaattt attaaaacag gaagaagacc ctcttcatga tcctgactcg 600 gaaaatagtt atgatgctcc tccccctcct catccgtccc tacattcgtc gcgtccctca 660 gataatgatg atttactttc atctacagat gaggctgaat tagatgaaga agctgccaaa 720 taccatcaag aagattgggg ttttttagca caagaaaaag gagcattaac atctaaagat 780 gaattggttg aatgctttaa aaacctcact attgctttac aaaacgcagg aattaaactt 840 cctgctaata atgataaatt tccttctgct ccgcctcttc ctcctgctta tgccccttct 900 gttgtagcgg gtctcgatcc tcctccgggg ccccttccac cgtctaaaaa tatgtctcca 960 ctacaaaagg cattgagaca ggcacagcga cttggtgagg ttgtttctga tttttctctt 1020 gccttccctg tttttgaaaa taataaccag cgttattatg aatcactgcc ttttaaacaa 1080 ctaaaagagt taaaaattgc ttgctcacaa tacggtccta ctgctccatt taccattgct 1140 atgatagaaa atttgggcac tcaggcttta cctccaaatg attggaagca gacagctagg 1200 gcatgccttt cagggggaga ttatttatta tggaaatctg aattttttga acaatgtgct 1260 cgtatcgctg atgttaaccg acagcaaggt atacagacct cctatgaaat gttgattggt 1320 gaaggccctt accaggctac tgatactcaa cttaatttct tgcctggtgc atatgcgcaa 1380 atatcaaatg cggctcggca ggcatggaaa aaacttccta gttccagtac caagacagag 1440 gatctttcca aagtccgaca gggacctgat gaaccttacc aggatttcgt ggcacgactt 1500 ttagatacta taggtaagat aatgtcagat gaaaaggctg ggatggtact ggcaaaacag 1560 ttggcttttg aaaacgctaa ctctgcttgt caagctgcct taagacctta tcgaaaaaag 1620 ggagatctgt ctgattttat tcgcatttgt gctgatattg gaccctcata tatgcaaggt 1680 atcgctatgg ctgcagcttt acaaggaaaa agcataaaag aggtactctt ccaacaacaa 1740 gcccgaaaca agaggggacg tcaaaggtca ggaaattcgg gttgttttgt ttgtggccag 1800 cctggacatc gggctgcagt atgccctcaa aaacaacaaa gtcctgttaa cactcctaat 1860 ttgtgcccgc gctgtaaaaa aggaaagcat tgggcacgag attgccggtc caaaacagat 1920 gttcaaggta cccctttacc cccggtgtcg ggaaactggg tgaggggcca gcccctggcc 1980 ccgaaacaat gttatggggc aacactgcag gttccaaaag aaccattgca gacctctgtc 2040 gagccacaag aggcagcgcg ggattggacc tctgtgccac ctcctacaca gtattaactc 2100 ccgagatggg ggtccaaacc cttgccacag gagtgtttgg gcctctacct ccagggacag 2160 ctggattact tttggggcgc agcagtgcgt ctttaaaggg aatacttatt catcctggtg 2220 tgattgactc tgattataca ggagagataa aaatattagc ctccgctcct aacaaaatta 2280 ttgtaatcaa tgcaggacaa cgtatagctc aacttctttt agtcccatta gtcatacaag 2340 gaaaaacaat taaccgagac cgtcaagata aaggtttcgg gtcctctgac gcctattggg 2400 tacaaaatgt taccgaggca cgrccagaac ttgagctacg cattaatggy aagcttttcc 2460 gtggagtact tgatacaggg gccgatatta gtgttatttc tgataaatat tggcctacta 2520 catggccaaa acagatggct atttctactc tccagggtat tggccaaact accaatccag 2580 aacagagttc atcccttctt acttggaagg ataaagatgg acatacaggc caatttaaac 2640 cttatatttt gccccatctt ccagttaatc tatgggggcg tgatatatta agcaaaatgg 2700 gtgtttattt atatagtcct tcacccactg tgacagattt gatgttagac caaggcttac 2760 ttccaaatca aggtttaggt aaacaacatc aaggcatcat tttacccctt gatttaaaat 2820 ctaatcaaga tcgaaaaggc ttggggtgtt ttccctaggg acctctgatt ctcctgtgac 2880 gcacgccgat cctattgatt ggaaatctga ggaaccggtg tgggtcgatc agtggcccct 2940 aacacaggaa aaactttctg ccgcacaaca gctggtacag gaacagctga gacttgggca 3000 tattgaacct tctacctctg cctggaattc cccaattttt gttattaaaa agaaatctgg 3060 aaaatggaga ttattacaag atcttcgcaa ggtaaatgaa acaatgatgc atatgggagc 3120 cctacaacct gggttgccca ctccttctgc tatacctgat aaatcttata ttattgttat 3180 agatttaaaa gattgttttt acactattcc acttgcacct caagattgca aacgatttgc 3240 ttttagtgtg ccctctgtta atttcaagga acctatgaaa cgatatcaat ggaaagttct 3300 tccacaagga atgactaata gccctacgct gtgtcaaaaa ttagttgcta cagcaatagc 3360 tcctgttcga cagcgttttc ctcagatata tttggttcac tatatggatg atatattact 3420 agctcacact gatgaacatt tattatatca agctttttct attctaaaac agcatttaag 3480 tcttaacggt cttgtgattg ctgatgagaa aattcaaacg cattttcctt ataattattt 3540 aggtttctcc ttgtatcctc gtacctataa cacccaacta gtaaagctgc aaactgatca 3600 tttgaaaact ctaaatgatt ttcagaaact tttaggagat attaactgga tccgtcctta 3660 tttaaagttg cccacttata ctttacaacc attatttgac atccttaaag gtgactctga 3720 tcctgcgtca ccccgaacac tttctttaga aggacaaact gctttacaat taatagaaga 3780 agctatcagg cgacaacaga ttacttattg tgattatcaa cgatcatggg gattatatat 3840 acttcccact ccccgagcac ctacaggagt actctatcaa gataaacctt tacggtggat 3900 atacttatct gctactccaa ctaaacacct acttccttat tatgaacttg ttgcaaaaat 3960 tgtagccaag ggacgacatg aggccatcca atattttggt atggagcctc cctttatctg 4020 tgttccttat gctttagaac aacaggattg gctttttcaa ttttcagata attgggccat 4080 agcatttgcg aattaccccg gacgaattat tcatcattac cctcctgata aattattgca 4140 atttgctagc tctcatgctt ttatttttcc aaaaatagtt cgccgacaac ctattcctaa 4200 cgctacactt atatttacag acggctcttc caatgggact gcagccttaa ttattaatca 4260 tcaaacttat tatacacaaa ccagtttctc ttctgctcaa gttgtggaat tatttgcagt 4320 ccaccaagca ttgctaacag tacctacttc cttcaattta tttacagaca gctcctacgt 4380 ggtcggtgcc ttacaaatga ttgagactgt tccaattatc ggcaccacct ctcctgaagt 4440 ttttaactta tttacattga ttcaacaggt tctacattgc cgtcaatatc cttgtttctt 4500 tggacatatt cgtgcacact ccacccttcc tggtgccctt gtacgaggca atcacactgc 4560 ggacgctctt accaaacaag tgttttttca atcagctatt gatgcagccc gaaagtccca 4620 tgatttacat caccaaaata gtcattcttt acgtttgcaa tttaaaattt cccgtgaggc 4680 tgcacggcaa attgttaaat cttgttctac ttgtcctcaa ttctttgtcc ttcctcaata 4740 tggtgtcaac cctcgaggtt tacgccctaa tcatctctgg caaacagacg ttactcacat 4800 tcctcaattt gggcgtctga aatatgttca tgtttcaatc gacacctttt ccaactttct 4860 catggcttcc cttcatactg gagaatcaac acgtcactgt attcaacatt tgctgttttg 4920 cttttccact tcaggtatcc cacaaacctt aaaaacagat aatggacctg gctataccag 4980 ccgctctttt caacgctttt gcctttcttt tcaaattcag cataaaacag gaattccgta 5040 taatcctcag ggacaaggca tcgtggaaag agcccatcaa cgtcttaaac atcaattatt 5100 aaaacaaaaa aaggggaatg aactgtatag cccctcaccg cataatgtct taaatcatgc 5160 tctttacgtt ttaaattttt taactttaga cgcagaaggc aattcagcag cccagcgttt 5220 ttggggagaa cgatcctcat gcaaaaaacc acttgtacga tggaaagatc cacttaccaa 5280 tctgtggtat gggcctgacc ctgtattaat atggggacga gggcatgttt gtgtttttcc 5340 acaggatgcc gaagcaccgc gctggattcc ggaaaggctg gtacgcgcgg cagaggaact 5400 ccctgacata tcaaatgcaa cgcatgacat tgaatgagac cacgaatgga ctacctaccc 5460 agagacaagt tgaagcgctg atgcgtcatg cttggaatga ggctcatgta caacccccag 5520 cgacacctat taaaatattg attatgttgt tgttgttgtt gcagcggata caaaacggag 5580 ccgctgcagc tttttgggct tatattcccg acccgcctat gattcaatcc ttaggatggg 5640 atagagaaat agtacctgta tatgtcaatg atactagcct gttaggggga aaatcagata 5700 ttcacatctc tcctcagcaa gccaatattt ccttttacgg tctcactact caatacccta 5760 tgtgcttttc ttatcaatcc cagcatcctc attgtataca ggtgtcagct gatatatcct 5820 atcctcgagt gactatttca ggtattgatg aaaaaactgg aaaaagatca taccgtaatg 5880 ggaccggacc tctcgacatt ccgttttgtg acaaaaattt aagtatcagc ataggaatag 5940 acactccttg gactttatgt cgagcacgaa tcgcatcagt atataacatt aacaatgcca 6000 acaccaccct cttgtgggac tgggcacctg gaggaacacc tgatttccct gaatatcgag 6060 gacagcatcc acccattctc tctgtaaaca ctgctcctat atttcaaact gaactgtgga 6120 aacttctggc tgcttttggt catggcaaca gtctatatct acagcccaac attagtggaa 6180 gcaaatatgg tgatgtggga gttacaggat ttttatatcc ccgagcttgt gttccttatc 6240 cttttatgtt gatacagggt catatggaaa taacactatc tttaaacatc tatcatttaa 6300 attgttctaa ttgtatactt actaattgca ttagaggtgt ggccaaagga gaacaagtta 6360 taatagtaaa acaacctgct tttgtaatgc tgcctgttga aataactgaa gaatggtatg 6420 atgaaactgc cttagaattg ttacaacgta tcaatacagc gcttagccgt cctaaaagag 6480 gtttaagcct aattatatta ggtatcgtat ctttaatcac cctcatagcg actgctgtta 6540 ccgcttctgt atctttagcg caatccattc aagctgctca tactgtggat tccttgtcat 6600 acaatgttac taaagtaatg ggaactcaag aagatataga taaaaaaata gaagatagat 6660 tatcagcttt atatgatgtg gtaagagttt tgggggaaca ggttcaaagc attaattttc 6720 gtatgaagat tcaatgtcat gctaattata aatggatttg tgtcacaaaa aagccttaca 6780 atacctctga ttatccgtgg gataaggtag aaaaacatct gcaaggaatt tggtttaata 6840 ctaatgtttc cttggatctt ttacaattgc ataatgaaat actcgacatt gaaaattcac 6900 caaaagctac tttgaatata gctgatactg tcaataattt tttacaaaat ctcttctcta 6960 acttccctag cctccattca ttatggcaga gcattattgt tatagctata attgtgttta 7020 ttgtaattgt tgtaattctt ttggttcctt gcctcactcg aggtttaatt aaagatttcc 7080 tacaaatgag aattgaatta atacatatga aatacagata catgttgcaa taccaaaaac 7140 ttatggattt tgtgaaaaaa agagagggga gctgcggggg acaacctgcg gagggttaag 7200 tcctgggagc tccttggcaa aatgccaagg cttaggcaag tacctaagct ccctgtcccg 7260 ccaccctcag gaagtcttaa gagcttttgg agctcaaatg tgttttggtt ttgcaacatg 7320 gcttaaaaag caggaaatct gattatgtaa gaaaccagta attatgtaag taaatgatct 7380 caagttactt aacttgctta tatatactgc tgcacaataa agcaaggtat cagc 7434 //