ID Y16421; SV 1; linear; genomic DNA; STD; VRL; 2739 BP. XX AC Y16421; XX DT 18-AUG-1998 (Rel. 56, Created) DT 18-APR-2005 (Rel. 83, Last updated, Version 4) XX DE Tomato leaf curl New Delhi virus-[Lucknow] partial DNA-A sequence XX KW coat protein; precoat protein; Rep protein 1; Rep protein 2; Rep protein 3. XX OS Tomato leaf curl New Delhi virus-[Lucknow] OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RA Hallan V., Saxena S.; RT ; RL Unpublished. XX RN [2] RP 1-2739 RA Hallan V.; RT ; RL Submitted (04-FEB-1998) to the INSDC. RL V. Hallan, Plant Virus Laboratory, National Botanical Research Institute, RL Lucknow U.P., 226 001, Rana Pratap Marg, INDIA XX DR MD5; 10d65a1c02e3f9792ba1b5a31e9bfcf0. DR EuropePMC; PMC2170441; 17963488. DR EuropePMC; PMC3125359; 21676270. DR EuropePMC; PMC3550763; 23637479. DR EuropePMC; PMC5691616; 28934148. XX FH Key Location/Qualifiers FH FT source 1..2739 FT /organism="Tomato leaf curl New Delhi virus-[Lucknow]" FT /segment="DNA A" FT /mol_type="genomic DNA" FT /db_xref="taxon:223348" FT CDS 48..434 FT /gene="AV3" FT /product="AV3 protein" FT /db_xref="UniProtKB/TrEMBL:O91271" FT /protein_id="CAA76211.1" FT /translation="MKIMLHGLFSAWVPINRLAHQVWIHKHVGSIVARISRKRSWSKVH FT ASCKISPRDRKELLPRHSRLRSCPRSHSCSPSKELWRSDQQISSFQRPHRRFADVSTST FT APMELVQLSPLPASQKQRPGQTGR" FT CDS 127..465 FT /gene="AV2" FT /product="pre-coat protein" FT /db_xref="GOA:O91270" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:O91270" FT /protein_id="CAA76210.1" FT /translation="MWDPLLHEFPESVHGLRCMLAVKYLQEIEKNYSPDTVGYDLVRDL FT ILVLRAKNYGEATSRYHHFNARIEGSPTSQLRQPLWSSCSCPHCPRHKSKGLDKQADEQ FT KTQNVQNV" FT CDS 287..1057 FT /gene="AV1" FT /product="coat protein" FT /db_xref="GOA:O91269" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:O91269" FT /protein_id="CAA76209.1" FT /translation="MAKRPADIIISTPASKVRRRLNFDSPYGARAVVPIARVTKAKAWT FT NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDVSHIGKVMCVSSVTRGTGLTHR FT VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPTGAPHDFGEVFNMFDNEP FT STATVKNMHRDRYQVLRKWHATVTGGTYASKENALVRKFVRVNNYVVYNQQEAGKYENH FT TENALMLYMACTHASNPVYATLKIRIYFYDSVTN" FT CDS complement(1054..1464) FT /gene="AC3" FT /product="Rep protein 3" FT /db_xref="GOA:O91274" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:O91274" FT /protein_id="CAA76214.1" FT /translation="MITDSRTGEYITADRAESGVYTWEIRNPLYFKILKHDSRPFLTQH FT DIIKIQIQFNHNLRKALGLHKCFLTFQIWTGLRPQIGIFLRVFKTQVLKYLDMLGVIGI FT YNVIRAVYHVLDNVLEQTIDVWTSYDIKLDIY" FT CDS complement(1184..1603) FT /gene="AC2" FT /product="Rep protein 2" FT /db_xref="GOA:O91273" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:O91273" FT /protein_id="CAA76213.1" FT /translation="MQSSSHSKNHSIPVAKTSLPQKKKKSIRRRRVDLPCGCSYYVSIN FT CHDHGFTHRGIHHCGSSREWRIYLGNSKSPVFQNFETRQQALPNTARHNQDSNTIQPQP FT AESPGASQVFSNFPNLDGLTPSDWDFLESLQNPGP" FT CDS complement(1506..>2593) FT /codon_start=3 FT /gene="AC1" FT /product="Rep protein 1" FT /db_xref="GOA:O91272" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:O91272" FT /protein_id="CAA76212.1" FT /translation="MPPPSRFRINAKNYFLTYPKCSLTKEEALSQLLTLETPTSKKFIK FT ICRELHEDGTPHIHVLIQFEGKFQCKNNRFFDLVVPSRSAHFHPNIQGAKSASDCKAYI FT DKDGDVLEWGVFQIDGRSARGGQQTANDAYAQAINTGNKEDAMKVLKELAPKDYVLQFH FT NLITNLDRIFQPRSEVYVSPFSISSFDRVPPELVDWVTSNVVCAAARPFRPISVVIEGD FT SRTGKTMWARCLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPLYLKHFKVFMGAQRDC FT QSNTKYGKPVMIKGGIPTIFLCNKGPNSSYKEYLNEEKNAALKQWVIKNAVFITLEEPL FT YSGRENIAPPEEEEEHSQEAS" XX SQ Sequence 2739 BP; 759 A; 583 C; 606 G; 791 T; 0 other; taatattacc gaatggcccg cgaaattttt aggtgggccc tgaacgaatg aaaatcatgc 60 tacatggcct atttagtgcg tgggtaccaa taaatagact tgctcaccaa gtttggatcc 120 acaaacatgt gggatccatt gttgcacgaa tttccagaaa gcgttcatgg tctaaggtgc 180 atgctagctg taaaatatct ccaagagata gaaaagaact actccccaga cacagtcggc 240 tacgatcttg tccgagatct cattcttgtt ctccgagcaa agaactatgg cgaagcgacc 300 agcagatatc atcatttcaa cgcccgcatc gaaggttcgc cgacgtctca acttcgacag 360 cccctatgga gctcgtgcag ttgtccccat tgcccgcgtc acaaaagcaa aggcctggac 420 aaacaggccg atgaacagaa aacccagaat gtacagaatg tatagaagtc ccgacgtgcc 480 aaggggttgt gaaggacctt gtaaggtgca atcatttgaa tccaggcacg atgtctctca 540 tattggcaaa gtcatgtgtg ttagtagtgt tacccgagga actggactca cacatcgcgt 600 ggggaagcga ttctgtgtga aatccgtcta tgtgctagga aagatatgga tggatgaaaa 660 catcaagaca aaaaaccata ctaacagtgt catgtttttt ttagttcgtg accgtcgtcc 720 tacaggagct ccccatgatt ttggggaagt gtttaatatg tttgacaatg aaccgagcac 780 agcaacggtg aagaacatgc atcgtgatcg ttatcaagtg ttacggaagt ggcatgcgac 840 tgtgacggga ggaacatatg catctaagga gaacgcatta gttaggaagt ttgttagggt 900 taataattat gttgtttata atcaacaaga ggcaggcaag tatgagaatc atactgaaaa 960 cgcattaatg ttgtatatgg cctgtactca cgcatcaaat cctgtatatg ctactttgaa 1020 aatccggatc tatttctatg attcggtcac aaattaataa atatcaagct ttatatcata 1080 agacgtccat acatcaatcg tctgttccaa tacattatcc aatacatgat aaactgctct 1140 tattacatta tatattccta tgacacctaa catatccagg tacttaagga cctgggtttt 1200 gaagactctc aagaaaatcc caatctgagg gcgtaagccc gtccagattt ggaaagttag 1260 aaaacacttg tgaagcccca gggctttccg caggttgtgg ttgaattgta tttgaatctt 1320 gattatgtcg tgctgtgtta ggaagggcct gctgtcgtgt ttcaaaattt tgaaatacag 1380 gggatttcga atttcccagg tatatacgcc actctctgct cgatccgcag tgatgtattc 1440 ccctgtgcgt gaatccgtga tcatggcagt tgatcgatac gtaatacgaa caaccacacg 1500 gaagatcaac tcgcctcctg cgaatgctct tcttcttctt ctgggggagc gatgttttcg 1560 cgaccggaat agagtggttc ttcgagtgtg atgaagactg cattcttgat tacccactgc 1620 ttcagtgctg cattcttctc ttcgttcaga tattccttat agctgctgtt cggaccttta 1680 ttgcacagga agatagtggg aattccacct ttaatcatga ccggctttcc gtacttcgtg 1740 ttgctttggc agtcacgctg ggcccccatg aatactttaa agtgctttag atagagggga 1800 tcaacgtcat caatgacgtt gtaccaagca tcattgctat acacctttgg gctcagatct 1860 agatgtccac acaagtaatt gtgtggtcct aagcaacgag cccacattgt tttgcccgtc 1920 ctactatccc cctctatgac tacacttatt ggtctaaaag gccgcgcagc ggcacacaca 1980 acattcgacg tcacccaatc gacgagttct ggcggaactc tgtcgaagga agaaattgaa 2040 aatggagaaa cataaacctc agaacgaggt tgaaaaatgc gatctaaatt tgtaattaaa 2100 ttgtgaaact gcagaacata atcctttggt gcaagttctt ttaatacttt catcgcatct 2160 tctttatttc ctgtgttaat cgcctgagca tatgcatcgt ttgctgtttg ctgaccacca 2220 cgagcagatc gtccatcgat ctggaaaaca ccccattcta gaacgtctcc gtctttgtcg 2280 atgtatgctt tgcagtccga tgctgattta gctccctgaa tgttcggatg gaaatgtgct 2340 gaccgacttg ggacaaccaa gtcgaagaat ctgttatttt tgcattggaa ttttccttcg 2400 aattggatga gaacatggat atgcggagtc ccatcttcgt gaagctctcg acagatcttg 2460 atgaatttct tcgaagttgg ggtttctagg gttagtaatt gggaaagtgc ctcttccttt 2520 gtaagagagc actttggata cgtgaggaaa tagttttttg catttattct aaaacgactt 2580 ggcggaggca taaaacttgt cgtttcgatc cggtgtctct caacttttct atgtaattgg 2640 tgtctggagt cccatatata ggtaagacac catatggcag aattgtaatt ttgaaaagaa 2700 aattacttta attcaaaatc cctaaagcgg ccattcgta 2739 //