ID Y16104; SV 1; linear; genomic DNA; STD; VRL; 6673 BP. XX AC Y16104; XX DT 01-AUG-1998 (Rel. 56, Created) DT 01-AUG-1998 (Rel. 56, Last updated, Version 1) XX DE Physalis mottle tymovirus OP, RP, CP genes XX KW coat protein; cp gene; OP gene; overlapping protein; replicase protein; KW RP gene. XX OS Physalis mottle virus OC Viruses; Riboviria; Tymovirales; Tymoviridae; Tymovirus. XX RN [1] RA Ranjith-Kumar C.T., Gopinath K., Jacob A.N.K., Srividhya V., Elango P., RA Savithri H.S.; RT "Genomic sequence of Physalis mottle virus and its evolutionary RT relationship with other tymoviruses"; RL Unpublished. XX RN [2] RP 1-6673 RA Savithri H.S.; RT ; RL Submitted (06-JAN-1998) to the INSDC. RL H.S. Savithri, Indian Institute of Science, Department of Biochemistry, RL Bangalore - 560 012, INDIA XX DR MD5; 591a460e058968eda321163ff4dce443. DR EuropePMC; PMC112128; 10864632. DR RFAM; RF00233; Tymo_tRNA-like. XX FH Key Location/Qualifiers FH FT source 1..6673 FT /organism="Physalis mottle virus" FT /mol_type="genomic DNA" FT /db_xref="taxon:72539" FT CDS 150..2150 FT /gene="OP" FT /product="overlapping protein" FT /db_xref="InterPro:IPR004935" FT /db_xref="UniProtKB/TrEMBL:O91259" FT /protein_id="CAA76070.1" FT /translation="MSHVLPGCSRCPQLNISSRCFYQPHTQFSRRASSRLSFLLSLPHT FT KGGHSSHLILRHSSFRTGYRPSPSPHPQNHRNPSSFHSLAPPCSSPIHCDVHETFQIPE FT ASGHQSQLLSSPQLPSNLGRHLPIPRDVNALANHDKLLHARRSHVLPPLSNSRPLHELR FT TTANPLLQPHCSPRIPFHQPFSLSLRLYLSNSRPHPALHPRISPCRQLRPASRCPLMAQ FT DSLHPPPISHPIRNSPGILGPMPLPTHTTRPPSKTIPLDSPATPPQQSNPTLDPITPQP FT GQCQACMPAGHSKVPTTLVSILHDTRLPGTSTGHLPPPTPQTPPHPALSVQLPLHLHPS FT RPYTSDLRPRRLCKNPIQQTRAQMGHSKSLGQSPDFCPSQRSNTTSGRLRVSPKPSPTS FT SPPSSTTLAAIPPLLFPPPINTNHSPHSGSPTPNPFSHSPRQRPILPSVYRGPVSLNHP FT SISPIQQTPPNHPPLPETTPPTPQQYQTSPPRPFQKKSPPLLIGSLPVFTEETTVHHPP FT RSHFKSPRPIPPPLHFFLSQLLGSAQPNSSRIRASARLSQLLQNFPYHHPTSPPSSPSQ FT DPPHPNPPTPLPLLSRNLSSSPSTTPRQLSQFSPPRPIPPPLDPHHHLRFIPNPLPPLR FT PPSPTSPFSINSTPPHSPFSIASSNSYHSFC" FT CDS 157..5955 FT /gene="RP" FT /product="replicase protein" FT /db_xref="GOA:O91260" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR008043" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:O91260" FT /protein_id="CAA76071.1" FT /translation="MSYQAALDALNSTSHRDASTNPILNSVVEPLRDSLSSYPYLIPKE FT DIPLILSFGIPVSGLGTDPHPHPIHKTIEIHLLFTHWRHLARLPSTVMFMKPSKFRKLQ FT AINPNFSHLLNYRLTSADTCRYPETSTHLPTTTSCFMHDALMYYHPSQILDLFMSCEQL FT QTLYCSLIVPPESHFTNLSLYPSVYTYQIHGRTLHYIPESHHAGSYDQPLDALSWLKIH FT SIPHPSLTLSVTRLESWGPCHSLLIQRGLPPRPSLSTRPPPLPNNPIRPLTPSHLNRVS FT AKLACLQVTLRSPPLSYLSFMIPDCLELPQATFLRQPLRHRLIPLSVYNSLFTYTRAVR FT TLRTSDPAGFVRTQSNKPEHKWVTPKAWDNLQTFALLNAPIRPQVVYEFLLNPLQRLRL FT HLQQHWRRYLLFSSPLLSTLITLHTRALPLPIPFPIPLVKDQFYHRFIEDRFPSTIPPF FT HPYNKPLLITLPCQKQLHQLLNNTKLLLPALFKRNHPLSSLVPFLFSRKKPLSITLPAL FT TSNPPVQFPHRFTSSYPNCWALRNRILPGFAPQPAFLSFSKTFLTTTQLLPLPLPLKTL FT LILTPQLLSLYYHVTSPLPPQQLLDNYHNSLHPDQFHLHWTLTTISVSSPTPFLPFDLP FT HQPPPSLSTQPPPTPRFQSPPPIPTTLSAEIPPPPNPPPTHPDSNFLPSTSTPDLPPPR FT TSPPIVVDPSHVAHHPYHHLTSRSLYSILDDPAYETCVRSGFVSINQSPYLPTSLFARA FT STSTPTPPQFNVPPSLSHLPVYSPPDPPSTQIPPTQSTLPTGALTFTPASVPLSHPPIS FT PPTPLSLSTQPFFTDPTCTGPVTTFELLYPAAYHPDTATFQTRLRCLPPTPLPIPKNKC FT LLTAFSSQTHYSEESIWHTLQTLLPDSLLSNPEISTLGLSTDILTTLCYYYHLQAVVLC FT PNRELHFGITTSSQTITLSYEPGPPRHFSSRPRLLGSAPHSNPDSSPLVRHALRFKHNQ FT HYLPFTSSHTHTSSLPHAKNLISNMKNGFDGVTSTLTQPHPNGPSLRDKLFTLDSLIDH FT SSAKSIPVIHISGFAGCGKTHPIQHLLKTRPFLHNLRLSTPTNELRSEWKRDMRPTPEN FT IWRFSTWESLLFKHSEILVIDECYKCPRYHHLHSILADPTLQTVILLGDPLQGEYHSNN FT PHSTNHPLPSEVLRFASYIDCYCWWTYRLPIKTANLFHIPTFSKQPGVITTSHTHPNQS FT KNLVNSIPTATAMNQMGHHAITISSSQGGTYDEINTILLDRNTNLLSPNNCLVALTRSK FT KGFMFVGNLHLASSDFGTNYMFSQALAQRPIDLTSTFPIDLPYLPLLHDPISSRNTRLV FT AGLTNFNHQPKAFKPGRNTLPPHIPLSLIIDHLYTTPSRWVTLSIHAWKPTHLPPTRLP FT LHTDLLPTLPSDPTPSPPPKEFATPISHAYHGEYFDSLAAFFLPAHDPTVKEIALKDQT FT SNQFPFLDREFSLSCQPSSLIAAIHSPSQDPTLLPASIHKRLRFRLSDAPYRITAQDNI FT LGHHLFNSLCRAYHRSPLTVDPFDPHLFAQCISINEYSQLSSKTKATIVANASRSDPDW FT RFTSVRIFAKAQHKVNDGSIFGSWKACQTLALMHDYIILTLGPVKKYQRIFDMKDRPPH FT LYLHCGHTPCQLSAWCTEHFRPTICTTNDYTAFDQSQHGEAVVWKCLKMQRLSIPQHLI FT NLHLHLKTNVHTQFGPLTCMRLTGEPGTYDDNSDYNIAVIYSQYTMQNLPLLVSGDDSV FT IVGTPPISPNWPAIKDLLHLKFKTEITSSPLFCGYYLSPAGCIRNPLAHFAKLMTCVDD FT MSLPEKVLSYLSEVSIGHNLGDQIIQHLPPHLIQYQSACFDFFCRNSTPSQKLLLSNDP FT IPESKLLALVHKIKWASKAFFSEPPQAREFLVSKSSLPSFPNNPKVSELESELLHFSQ" FT CDS 5958..6524 FT /gene="CP" FT /product="coat protein" FT /db_xref="GOA:Q76Q89" FT /db_xref="InterPro:IPR000574" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:Q76Q89" FT /protein_id="CAA76072.1" FT /translation="MDSSEVVKVKQASIPAPGSILSQPNTEQSPAIVLPFQFEATTFGT FT AETAAQVSLQTADPITKLTAPYRHAQIVECKAILTPTDLAVSNPLTVYLAWVPANSPAT FT PTQILRVYGGQSFVLGGAISAAKTIEVPLNLDSVNRMLKDSVTYTDTPKLLAYSRAPTN FT PSKIPTASIQISGRIRLSKPMLIAN" XX SQ Sequence 6673 BP; 1503 A; 2708 C; 874 G; 1588 T; 0 other; tagaccctgt ttcagcctct atcttttctt ttcccttgtt tattcctgca cctgactagg 60 cccttctaaa gcccctagtc ccttttccta gccaccctct aaggcccttt ccaaagcccc 120 ttagagactc ctatcttcca ctcatcttaa tgagccatgt cttaccaggc tgctctagat 180 gccctcaact caacatctca tcgagatgct tctaccaacc ccatactcaa ttcagtcgtc 240 gagcctcttc gcgactctct ttcctcctat ccctacctca taccaaagga ggacattcct 300 ctcatcttat ccttcggcat tccagtttca ggactgggta ccgaccctca ccctcacccc 360 atccacaaaa ccatcgaaat ccatcttctt ttcactcact ggcgccacct tgctcgtctc 420 ccatccactg tgatgttcat gaaaccttcc aaattccgga agcttcaggc catcaatccc 480 aacttctctc atctcctcaa ctaccgtcta acctcggccg acacctgccg ataccccgag 540 acgtcaacgc acttgccaac cacgacaagc tgcttcatgc acgacgctct catgtactac 600 cacccctctc aaattctaga cctcttcatg agctgcgaac aactgcaaac cctctactgc 660 agcctcattg ttcccccaga atcccatttc accaaccttt ctctctatcc ctccgtctat 720 acctatcaaa ttcacggccg caccctgcat tacatcccag aatctcacca tgccggcagc 780 tacgaccagc ctctagatgc cctctcatgg ctcaagattc actccatccc ccacccatct 840 ctcaccctat ccgtaactcg cctggaatct tggggcccat gccactccct actcatacaa 900 cgaggcctcc ctccaagacc atccctctcg actcgcccgc cacccctccc caacaatcca 960 atccgaccct tgaccccatc acacctcaac cgggtcagtg ccaagcttgc atgcctgcag 1020 gtcactctaa ggtccccacc actctcgtat ctatccttca tgatacccga ttgcctggaa 1080 cttccacagg ccaccttcct ccgccaaccc ctcagacacc gcctcatccc gctctcagtg 1140 tacaactccc tcttcaccta cacccgagcc gtccgtacac ttcggacctc cgaccccgcc 1200 ggctttgtaa gaacccaatc caacaaaccc gagcacaaat gggtcactcc aaaagcctgg 1260 gacaatctcc agacttttgc ccttctcaac gctccaatac gacctcaggt cgtctacgag 1320 tttctcctaa accctctcca acgtcttcgc ctccatcttc aacaacactg gcggcgatac 1380 ctcctcttct cttcccccct cctatcaaca ctaatcactc tccacactcg ggctctccca 1440 ctcccaatcc cttttcccat tcccctcgtc aaagaccaat tctaccatcg gtttatcgag 1500 gaccggtttc cctcaaccat ccctccattt cacccataca acaaacccct cctaatcacc 1560 ctcccttgcc agaaacaact ccaccaactc ctcaacaata ccaaacttct cctccccgcc 1620 cttttcaaaa gaaatcaccc cctctcctca ttggttccct tcctgttttc acggaagaaa 1680 ccactgtcca tcaccctccc cgctctcact tcaaatcccc ccgtccaatt cccccaccgc 1740 ttcacttctt cctatcccaa ttgctgggct ctgcgcaacc gaattcttcc aggattcgcg 1800 cctcagcccg cctttctcag cttctccaaa actttcctta ccaccaccca acttctcccc 1860 cttcctctcc ctctcaagac cctcctcatc ctaacccccc aactcctctc cctctactat 1920 cacgtaacct ctcctcttcc ccctcaacaa ctcctcgaca attatcacaa ttctctccac 1980 cccgaccaat tccacctcca ctggaccctc accaccatct ccgtttcatc cccaaccccc 2040 ttcctcccct tcgacctccc tcaccaacct cccccttctc tatcaactca accccccccc 2100 actccccgtt ttcaatcgcc tcctccaatt cctaccactc tttctgctga aatccccccc 2160 cccccaaacc cccccccaac ccacccggat tccaatttcc ttccctcaac ctccacacct 2220 gacctacctc caccccgaac ctcaccccca attgttgtcg accctagtca cgtcgcccac 2280 catccctatc accaccttac ctccaggagc ctgtactcca tcctagacga ccccgcctac 2340 gaaacctgcg ttcgctcggg tttcgtctcc atcaaccaat ccccttactt gcccaccagc 2400 ctatttgccc gcgcctccac ctcaactcct accccccctc aattcaacgt acccccttca 2460 ctctcccacc tccccgtgta ctcccccccc gatccccctt caactcagat tcccccaaca 2520 caatccaccc tccccactgg ggccctcacc ttcactcccg cctctgtccc tctctcacac 2580 cctcccatct caccccccac tcccctttcc ctttccactc aacccttctt cacagatccc 2640 acctgcacag gacccgtcac aacctttgaa ctcctctatc ctgcagcata ccatcccgac 2700 acagccacct ttcaaacccg cctccgttgc ctccccccaa ctcccctacc catcccaaaa 2760 aacaagtgcc ttctcacagc cttcagctcc caaactcact attctgaaga gtccatctgg 2820 cacactcttc aaaccctcct gcctgactcc cttctctcca accccgaaat ctccacactc 2880 gggctctcca ccgacatcct caccactctc tgctactact accacctgca agccgttgtt 2940 ctctgcccaa acagagaact tcatttcggc atcaccacct cttcccagac catcaccctc 3000 tcctacgagc ccggcccccc tcgccacttt tcttcccggc ctcggctctt aggctctgcc 3060 ccccactcca acccagactc atctccccta gtgcgacacg ctctgcgttt caaacacaac 3120 caacattacc ttcctttcac ctcttctcac actcacactt cctctcttcc ccacgctaaa 3180 aacctcattt ctaacatgaa gaatgggttt gacggcgtca cctcaacact cactcaaccc 3240 cacccaaacg ggccctctct cagggacaaa cttttcactc tggactcact tattgatcat 3300 tcttctgcga agtccatccc ggtcatccac atttccgggt tcgctggttg tggaaaaacg 3360 caccccatcc aacacctcct caaaacccgc ccctttttgc acaacttacg cttgagcaca 3420 ccaaccaacg aactccgctc cgaatggaag cgagacatgc gccccactcc tgaaaacatc 3480 tggcgcttct ccacttggga atccctcctc ttcaagcatt ccgaaatcct cgtgatcgac 3540 gaatgctaca aatgcccgag gtaccatcac cttcattcca ttctcgctga cccaaccctg 3600 caaactgtca tccttcttgg cgatcctctc caaggcgagt atcactccaa taacccccac 3660 agcaccaacc accccctccc ctctgaagtt cttcgtttcg caagctacat tgattgctat 3720 tgctggtgga cttacagact ccccatcaaa accgccaacc tgttccacat cccaaccttc 3780 agtaaacagc ccggcgtcat caccacttcc cacacccacc ccaatcaatc caaaaatctc 3840 gtcaattcca ttccgactgc tactgccatg aatcaaatgg gacatcatgc catcacgatc 3900 agcagcagtc aaggtggcac ttatgatgag atcaacacca tcctccttga ccgtaacacc 3960 aaccttctct ccccaaacaa ctgcctcgtt gccctcaccc gctccaaaaa aggcttcatg 4020 ttcgttggca atctacatct cgcctctagc gactttggaa ccaactacat gttctcccaa 4080 gctcttgctc aacgacccat tgacctcacc tccactttcc ccatcgatct tccctatctt 4140 ccccttctcc acgaccccat ttctagccgc aacacccgcc ttgttgcagg tttgaccaac 4200 ttcaatcacc aacccaaagc cttcaaacct ggccgcaaca ccctcccacc tcacattccc 4260 ttgtccctca ttatagacca cttgtacaca accccgtcac gttgggtgac tctgtcgatc 4320 cacgcctgga aaccgaccca ccttccccca acccgactac ccctccacac tgacctcctc 4380 ccaaccctcc ccagcgaccc cactccttct cccccaccaa aggaattcgc caccccaatc 4440 tcccatgcct accatggcga gtactttgat tccctggctg ccttcttcct gccagcccac 4500 gacccgaccg tcaaagaaat cgcgctcaag gatcaaacct ccaatcagtt tcctttcctt 4560 gaccgcgagt tctccctctc ttgtcaaccc tcgtctctca tagcagccat ccactcccct 4620 tcccaagacc caacccttct cccagcctcc atccacaaaa ggctcagatt tcggctctct 4680 gacgcccctt accgcatcac tgcccaagac aatattcttg gccaccacct cttcaactca 4740 ctctgccgag cttatcaccg ctcccccctc acagtcgatc cttttgaccc tcatctgttt 4800 gcacaatgca tcagcatcaa tgagtactcc caactttcct ccaaaaccaa agccaccatt 4860 gtcgccaatg cttccagatc tgatcccgac tggcgattca cctcggtccg tatattcgcc 4920 aaagcccaac acaaagtcaa cgatggctcc attttcggat cctggaaagc atgccaaacc 4980 ctcgccttga tgcatgacta catcatcctc acattgggac ctgtcaagaa gtaccaaaga 5040 atattcgaca tgaaagacag gccaccccac ctctacttgc actgcggcca caccccttgc 5100 caactgtccg cttggtgcac tgaacatttc cgcccaacca tctgcaccac caatgattac 5160 actgcatttg accaatccca acacggcgag gctgtcgtct ggaaatgcct caagatgcag 5220 cgactctcca tcccacagca tctcatcaac ctccacctac acctcaaaac caacgtccac 5280 actcaatttg gccctctcac ctgcatgaga ctcactgggg aacccggcac ttatgatgac 5340 aactctgatt acaacattgc cgtcatctac tcccaataca ccatgcagaa cctccccctt 5400 cttgtttctg gcgatgattc agtcattgtc ggcactccac ccatctcccc gaattggcct 5460 gccatcaaag acctccttca tctcaaattt aaaactgaaa tcacctctag ccccctcttc 5520 tgcggctact acctctcccc cgccggctgc atccgcaatc cccttgccca ttttgccaag 5580 cttatgactt gcgtcgatga tatgtctttg cctgaaaagg tattgtcata tctatccgag 5640 gtttccattg gccacaatct cggcgaccaa atcattcaac acctgccgcc ccacctcatc 5700 cagtaccaat ctgcctgctt cgacttcttc tgtcgcaatt cgacaccttc ccagaaactc 5760 ctcctctcta atgacccgat tccagaatct aaacttcttg ccctggtgca caagatcaaa 5820 tgggcttcaa aagctttctt ttccgaacct cctcaagctc gcgaattctt ggtcagcaag 5880 tcatcccttc cctccttccc aaacaacccc aaggtttctg aactagagtc tgaattgctt 5940 cacttttctc aatagaaatg gactcttcgg aagttgtcaa agtcaagcag gcctccatcc 6000 ccgcccctgg ctccattctc tcccagccca acacagaaca atcacctgcc atagttctcc 6060 cttttcagtt tgaagccact actttcggca ccgctgaaac cgcagcccaa gtctctctcc 6120 agactgccga ccccattacc aaactgaccg ccccctaccg acatgctcag atcgtcgagt 6180 gcaaagctat cctcactcca actgatcttg ctgtctccaa tcccctcaca gtctacctag 6240 catgggtccc cgccaactcc cctgccactc cgactcaaat actgcgagtc tacggcggtc 6300 agtcttttgt tcttggcggc gccatctcag ccgccaaaac cattgaggtc cccctcaatc 6360 ttgactctgt caaccgcatg ttgaaagaca gcgtgaccta cactgacacc cccaagctcc 6420 ttgcctactc aagagccccc accaacccct cgaaaatccc aaccgctagt attcagatca 6480 gcggtcgcat tcggctctcc aagccaatgc tgatagccaa ctaaactccg cacccttccc 6540 tttctgaggc tggaatccta cttcccgttt gactcacgtt aaagtcacgt aattgaggac 6600 agttcctctc cctctagcac acagaggtca aactgggtgc aactcccccc ccttccgtgg 6660 gtaacggaaa cca 6673 //