ID Y15937; SV 2; linear; genomic RNA; STD; VRL; 6440 BP. XX AC Y15937; XX DT 19-DEC-1997 (Rel. 54, Created) DT 31-MAR-2003 (Rel. 75, Last updated, Version 6) XX DE Sheep astrovirus, complete genome, genomic RNA XX KW capsid protein; genome; non structural protein; precursor; KW RNA-dependant RNA polymerase; serine protase. XX OS Mamastrovirus 13 OC Viruses; Riboviria; Astroviridae; Mamastrovirus. XX RN [1] RX PUBMED; 9568965. RA Jonassen C.M., Jonassen T.O., Grinde B.; RT "A common motif in the 3' end of the genomes of astroviruses, avian RT infectious bronchitis virus and an equine rhinovirus"; RL J. Gen. Virol. 79:715-718(1998). XX RN [2] RC Revised by [5] RA Jonassen C.M.; RT ; RL Submitted (17-DEC-1997) to the INSDC. RL C.M. Jonassen, National Institute of Public Health, PO Box 4404 Torshov, RL 0403 Oslo, NORWAY XX RN [3] RX PUBMED; 11297680. RA Jonassen C.M., Jonassen T., Saif Y., Snodgrass D., Ushijima H., Shimizu M., RA Grinde B.; RT "Comparison of capsid sequences from human and animal astroviruses"; RL J. Gen. Virol. 82(Pt 5):1061-1067(2001). XX RN [4] RX DOI; 10.1016/S0168-1702(02)00269-1. RX PUBMED; 12573498. RA Jonassen C.M., Jonassen T., Sveen T., Grinde B.; RT "Complete genomic sequences of astroviruses from sheep and turkey: RT comparison with related viruses"; RL Virus Res. 91(2):195-201(2003). XX RN [5] RP 1-6440 RA Jonassen C.M.; RT ; RL Submitted (19-JUN-2000) to the INSDC. RL Jonassen C.M., Virology, National Institute of Public Health, Postboks 4404 RL Torshov, 0403 Oslo, NORWAY. XX DR MD5; 31e58011fb1c6aed4c394e75ddd83e8e. DR EuropePMC; PMC112117; 10846102. DR EuropePMC; PMC1828050; 17343744. DR EuropePMC; PMC2944169; 20831802. DR EuropePMC; PMC3502403; 22998755. DR RFAM; RF00164; s2m. XX FH Key Location/Qualifiers FH FT source 1..6440 FT /organism="Mamastrovirus 13" FT /host="sheep" FT /isolate="provided by Dr. D.R. Snodgrass, Moredun Research FT Institute, Edinburgh" FT /mol_type="genomic RNA" FT /db_xref="taxon:1239577" FT CDS 46..2580 FT /product="nonstructural protein, putative serine protase" FT /note="ORF1a" FT /db_xref="GOA:Q9JH67" FT /db_xref="InterPro:IPR009003" FT /db_xref="UniProtKB/Swiss-Prot:Q9JH67" FT /protein_id="CAB95002.1" FT /translation="MNVYDKVLQFGSKKARARGMALNKLSRNRLEDIYAGSGPLVFGFG FT PIDMVDPGSLNPSIKTLDTVYVAAVQPDNQYVVHHFVPGRNEWVETDASTHQPTALVGV FT LVQDHKAKTREVEDLKSQLSQLRMEHEILRHEYERLKLKSPIVKPFKPLKVLLFSLLLG FT LLFAGVTNGARTGTCYAYDEEKDTCLYWEWKDSREVAWYDSYVTEALAIYNRACVYVRS FT KEFMTYLSLVFQTVFNWYFCATALAVYYMARAENPIVMFVTLALATLSQFQLLAVAVLP FT LLDFSATMGLWLSMVVFYMSQQISILVSFCVLVLSVMIGTFMADSEYAMMIKGHAVVFA FT IVCYSHVAMILNIPPWVVSLTMVCYRLWRVCFVFPAERLEIRSADGKVLHTVPTHPNWT FT AKVTRFVQSLRKGLRTSVAPTARIVPDGIAIVEAREGVGTCFRVKNNLVTSKHVVGSDD FT AVKIRWGAQEDMARVTYRHPTKDIALMALPTNLQTMPAYKFAKAITDGPIVMTAFDEAN FT LLLVAVTEGVRVEDHMTYSVATRNGMSGAPITTVDGRVIAVHQTNTGFTGGAVIFVPED FT IPEVRKISKREQELEDRVKQLEGMLNMDQAYVDSNLIVDLVREAVQREMKVLRTELANL FT GGFSQKKKGKNKSTKRKRKAVWTEEEYKAMLEKGFTRDQLRIMADAIRDQYYDDEDEQS FT EEEAGYPDWSDPGDSTDIENEWFGYEQSWKELEPAKSGVVVNTLPKDLVFKYSLDNYPI FT SKQDIQAVAKELKIYEKAISDIISTSVSTDGKWKDDVDAQKILQELDGLWWGINHTLWE FT HGLMPFTQRRKRVQQPKNSKGALKTRAPKSAN" FT CDS 2529..4100 FT /exception="reasons given in citation" FT /product="nonstructural protein, putative RNA-dependant RNA FT polymerase" FT /note="ORF1b" FT /db_xref="GOA:Q9JH66" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="UniProtKB/Swiss-Prot:Q9JH66" FT /citation=[4] FT /citation=[3] FT /protein_id="CAB95003.1" FT /translation="KKLQRGPEDPGPEECKLDYWEQLVEPSKEKFLVPPEYPLLGVVPL FT DRPISDFDAPVDNLLALLPEPESPDLGFEPAVWGPEAYVKSFEKFDFADPDPNIEKNYP FT REWAFANLVLHREFDFLADSVVKDITATSKNSESTPGFPKTYWWKTEAEYLAKRGYADY FT VSEWNRIRGGARPNVLWYLFLKKEILKSTKVRDADIRQIICSDPIFARIGCCFEEDQNE FT RMKRRTKTRMPQCGWSPFFGGFNDRIQRLVAKGNPYWIEFDWTRYDGTIPSQIFKHIKN FT FRFSMLAKEYQTPELRNMYHWYVDNILRRYVCMPSGEITIQHKGNPSGQVSTTMDNNLV FT NVFLQAFEYAYLHPEKSMDELRKDWESYDSLIYGDDRLTTSPSVPNDYVTRVVAMYKDI FT FGMWVKPEKVKVSHSPVGLSFCGFVITHQDGQYLPVPAEEAKLLASLLRPTKKLENMDA FT LYGKLLCYRILNHNLPNDNKFRNYILVALEVMARHYSSRGEEPPFYVTESMLDKLWRGG FT PKFDYG" FT misc_feature 2529..2534 FT /function="ribosomal frameshift slippery site" FT CDS 4093..6381 FT /product="capsid protein precursor" FT /note="ORF2" FT /db_xref="GOA:Q9JH65" FT /db_xref="InterPro:IPR004337" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/Swiss-Prot:Q9JH65" FT /protein_id="CAB95004.1" FT /translation="MAEKPQQKAVASAAKQLAKEVVKLDKITKSNGKQHPQKNVPARKW FT RPRQAKPNNRRVTHKIKRELHKQGLEGPASRFRVTVSATIGKVGPNKEQGPELQIATFL FT HPSLVKEPNDGSNFGPLQAAAAQWGLWRISDLEVRFTPLVGSSAVTGSVTRASLNLTQS FT PGATSWGGLGARKHLDVPTGVSKVWKLRRGDLTGPRQTWWVTDTNEEGGQSCGPMLEVH FT GLGKTTSTYKDSDWTGDLFIVELHGTWEFSNYNAKPALGMLERVTDQTNVELGVDTEGQ FT ITMTIPENSPMARHMGERFERASASNASSVGETIWQIVDEGAGLASSVAPAPFGWLIKG FT GWWFVKKILGRAANAGSQYLVYASLADAQNGKPAMSTSRGYVREVKQTILSSTQLNAPN FT TGPGASQPALAAYEMFPYFPHGEPAVGQPFYLMSTVSTGVYREAMPVWVKYNYPGAPSN FT QAPFEVTIGQTTYQAQTYFKLTEPVAYGADIPEVTSEVKPALNGWYTLDTLPAIGTFQA FT IFTLPGTKSKYGDVVAASHFSITPQLMLVAYLVRVTTALPNALRGSPWSDNADNSILYY FT TPLVNAYAAATSDANPIQFTPNRACVSECRSHCGHPTIVAADVGEYILALVWCRGNGFS FT AGVINSYGALADTSFNLDSLRADSNGVMTLLNRAVPYSSLCALRMTRGVPPTSDDELVA FT RILGQLQTRLKFAAGSGSSSEDDLSDDDDFECLRSTPLQQIYEGVRGLRGHAEAVAVVK FT SLQSRGHAE" FT stem_loop 6358..6400 FT /note="stem loop-2 like sequence" XX SQ Sequence 6440 BP; 1595 A; 1490 C; 1656 G; 1699 T; 0 other; ccaaagatag ttttgggtag gtctgtcttt gtagttccat tcaaaatgaa tgtctatgac 60 aaagtgctgc agttcggctc taagaaggcc agagctcgtg gcatggccct caacaagctc 120 tcacgtaacc ggcttgagga catttatgca ggctccgggc cattggtctt tggctttgga 180 ccaatcgata tggttgaccc tggctcgctg aacccttcca ttaaaacttt ggatacggtt 240 tatgttgccg ctgttcaacc cgataaccaa tatgttgtcc accactttgt accaggccgg 300 aacgagtggg tagagactga tgcttcaacc caccagccta cagcccttgt cggtgtactt 360 gtgcaagatc ataaggcgaa gacacgtgag gttgaggacc tgaagagtca attaagtcag 420 cttagaatgg aacatgaaat cctacgacat gagtatgaga ggctgaagtt aaaatctccc 480 atagtcaaac cttttaaacc acttaaggta ctgctcttct cattgctcct gggcttactt 540 tttgctggcg taactaacgg tgctcgcacc gggacatgct atgcttatga tgaggagaag 600 gacacttgcc tctattggga atggaaggat agtagagagg ttgcttggta tgatagctat 660 gtcactgagg ctttggcaat ttataacagg gcatgtgttt atgtcaggag taaggagttc 720 atgacttact tatctttggt cttccagaca gtgtttaact ggtacttttg tgccaccgca 780 cttgctgtct actacatggc ccgtgcagaa aatccaatcg tcatgtttgt gaccttggct 840 ttggctactt tgtcacagtt tcagttgctg gctgttgccg ttctacctct tttagatttt 900 tcagcaacca tggggctttg gctgtccatg gttgtctttt acatgtccca gcagatctcc 960 atcctagtgt ccttctgtgt gttggtgctt tcagtgatga ttggcacctt tatggcagac 1020 tctgaatatg ctatgatgat caagggtcac gctgtggtct tcgccatagt ctgctattca 1080 catgtggcca tgattctaaa cataccaccc tgggttgtgt cattgacaat ggtctgctac 1140 cgtttgtgga gggtctgttt tgtatttcca gccgagcgtt tggagataag atcagcagat 1200 ggtaaagtcc tccacactgt gccaacacat ccgaattgga ctgccaaggt gacccgcttt 1260 gtgcagtcct tgcgtaaggg tctgcgcact agcgtggccc ctaccgctag gattgtgcca 1320 gacggtattg ctattgttga agcccgtgag ggtgttggca cctgttttag agtcaaaaac 1380 aacttggtca catcaaagca tgtcgttggt tcggacgatg cagtcaagat taggtggggt 1440 gcccaagaag acatggcacg tgtcacatat aggcatccca ctaaggatat tgcattgatg 1500 gccttgccaa ctaacctcca gactatgcca gcttataagt ttgctaaggc tattactgat 1560 ggccccatag ttatgaccgc ttttgatgag gcaaatcttt tgttagtggc cgttacagag 1620 ggtgtccgtg tggaggacca catgacatac tctgtggcca ctcgtaacgg gatgtcaggg 1680 gccccaatca caacggttga tggccgggtg attgcagtac accagaccaa tacaggcttt 1740 acgggaggcg ctgtcatctt tgtgcctgaa gatatccctg aggttaggaa aatctcaaag 1800 agggaacaag aactagagga ccgtgttaag caacttgaag gtatgctcaa tatggaccag 1860 gcttatgtag actctaactt gattgttgac ttggttcgtg aggctgttca acgtgagatg 1920 aaggtcttgc gtactgagtt ggccaacttg ggtggctttt cacagaaaaa gaagggaaag 1980 aacaagtcta ctaagcgcaa acgtaaggcc gtttggactg aggaggagta caaagccatg 2040 ctagagaagg gcttcaccag ggatcaactg aggataatgg ctgatgccat cagggaccag 2100 tattatgatg atgaagatga acaatcagaa gaggaggctg gttatcccga ctggtcggac 2160 cctggtgatt ccacagatat agagaatgag tggtttggct atgagcaatc ttggaaagaa 2220 cttgaaccag caaaatcagg agtggttgtg aataccctac ccaaggatct agtgtttaag 2280 tacagcttag acaattatcc catctctaaa caggacatac aggctgtggc caaggagctc 2340 aaaatctatg agaaagccat ttctgatatc atttccacca gtgtctccac tgatggtaag 2400 tggaaagatg atgttgatgc tcagaagatc ctgcaggagc ttgatggctt gtggtggggg 2460 attaatcaca ccttatggga gcatggacta atgcctttca ctcagcgtag gaagcgtgtc 2520 cagcagccaa aaaactccaa aggggccctg aagacccggg ccccgaagag tgcaaattag 2580 actactggga gcagcttgtt gaaccatcta aggaaaaatt tcttgtgcca ccagagtacc 2640 ctctattggg agtagtgccg ttagatcggc caattagtga ttttgatgcc cccgtagata 2700 acctgttggc tttgctgcca gagcctgagt cacctgattt aggttttgag ccggcagttt 2760 ggggcccaga ggcttatgtg aagtcatttg aaaaatttga ttttgctgac cctgacccaa 2820 acattgagaa gaattacccg cgtgagtggg cttttgccaa cttggttcta catagagagt 2880 ttgactttct tgctgactcc gttgttaaag atataaccgc aacatctaag aattcggagt 2940 ctacaccagg tttcccaaaa acttattggt ggaaaacgga ggctgaatat ttggcaaagc 3000 gtggctatgc cgattacgtc tccgagtgga accgaatcag ggggggcgct aggcccaatg 3060 tgctctggta cctatttttg aagaaagaaa tacttaagtc caccaaggtt agagacgctg 3120 acatacggca gattatctgc tctgacccca tttttgcgcg aattgggtgc tgttttgaag 3180 aagatcaaaa cgagcgcatg aagcggcgta ctaagactcg tatgccgcag tgtggttggt 3240 cacctttctt tgggggtttc aatgacagga ttcagcgcct cgttgccaag ggcaatcctt 3300 attggattga gtttgactgg actaggtatg atggcacaat tccttcccag atctttaaac 3360 atataaagaa ttttaggttc tcaatgctag ctaaggagta ccagacacct gaactcagga 3420 atatgtacca ctggtacgtt gataacatcc tgcgccggta tgtttgtatg ccatcaggtg 3480 agatcaccat acagcataag gggaatccct caggccaggt gtccacgaca atggacaata 3540 acctggtcaa tgtcttcctg caggcatttg agtatgccta tttacatcca gagaagagca 3600 tggatgaact taggaaggac tgggagagct atgattcctt aatatatggt gatgacaggc 3660 taacgacaag cccaagtgtg cccaatgatt atgtcaccag agttgttgcc atgtacaagg 3720 acatttttgg catgtgggtg aaacctgaga aagtcaaggt ttctcactcc ccagttgggc 3780 tttccttttg tggttttgtc atcacacacc aggatggtca gtacttgcct gtaccggctg 3840 aagaagcaaa gctgctggca agccttctta gacctaccaa aaagttggag aacatggatg 3900 ccctctatgg aaaactcttg tgttatcgca tcctcaatca caacctccct aatgacaata 3960 agttcaggaa ttacatctta gtggctttgg aggtgatggc tcgccactac agtagtagag 4020 gggaagaacc gcccttctac gtcactgaga gtatgctgga caagctttgg aggggcggac 4080 caaagtttga ttatggctga aaagccccag cagaaagctg tcgcctctgc cgctaagcag 4140 ttagcaaagg aggtcgtaaa actagataag atcaccaagt ctaatgggaa gcagcatcct 4200 cagaagaatg tccccgcgcg caagtggcgg cctcgccagg ctaagcctaa caataggcgt 4260 gtcactcaca agatcaagag ggaactacac aaacaggggc ttgaaggtcc tgcttctagg 4320 tttagggtta ctgtctctgc tactattggc aaggttggcc ctaataagga acagggacct 4380 gagctacaga tagccacctt cctgcaccct agtttagtga aggaacctaa cgatggctcg 4440 aattttgggc cattgcaagc tgcggctgcc caatggggct tgtggcgaat ttccgatctg 4500 gaggttcgct tcacccccct agttgggtct tccgcagtta ctggttctgt cacaagagcc 4560 tccctcaatc tcacccagtc ccctggggcc acctcgtggg gtggtctcgg cgcgcgtaag 4620 catcttgacg tgccaactgg tgtgtccaag gtgtggaagc tccgccgtgg tgacctcaca 4680 ggtcccaggc aaacttggtg ggttactgac accaatgagg agggtggcca atcttgtggc 4740 ccaatgctag aggtgcatgg actcggtaag acaacttcaa catataagga ttctgattgg 4800 actggggatt tgtttatagt tgagcttcat gggacttggg agttctccaa ttataatgcc 4860 aagccagccc ttggcatgtt agagagagtc acagaccaga ccaatgttga attgggagta 4920 gacactgagg ggcagatcac catgaccatc cctgagaata gcccgatggc tcgccatatg 4980 ggtgagcgct ttgagcgcgc cagtgcctca aatgcatctt cagttgggga aaccatttgg 5040 caaattgtgg atgagggagc tggcctggca tcctccgtgg cccccgcacc ctttgggtgg 5100 ctcataaaag gcggctggtg gtttgtgaag aaaatacttg gtagagccgc caatgccggc 5160 tcccaatatc tggtctatgc ctcacttgcc gacgcccaga acggcaagcc agcaatgtcc 5220 acttctcgtg gttatgtccg cgaggttaag cagaccatac tctcatccac acagctaaat 5280 gcgcctaata ctggcccggg tgcgtctcaa ccggcacttg ctgcctacga gatgtttccc 5340 tactttccac acggcgaacc agccgtcggg cagcccttct atctcatgtc aacagtttcc 5400 actggggttt atcgtgaagc catgcctgtc tgggtcaagt acaattaccc tggggcccct 5460 tcaaatcagg ctccctttga ggtaacaatt ggtcaaacca cataccaggc ccagacttat 5520 tttaagttaa ctgagccagt ggcttatggt gcagacatcc cagaggtgac gagtgaagtg 5580 aaacctgctc tcaacgggtg gtacacgtta gataccttgc ctgcaatagg cactttccag 5640 gcaattttca ccttgccagg caccaagtct aagtatggtg atgttgttgc ggcgtcacat 5700 ttttccatca caccccaact gatgttggtg gcctacttag ttagggttac caccgcgcta 5760 cctaacgcgt tgaggggttc cccctggtca gataatgctg acaacagtat actttactat 5820 actcctcttg tcaacgcgta cgccgcagca acttcagatg ccaatcccat acagtttaca 5880 cctaataggg cttgtgtttc agaatgcaga agtcactgtg gacatcccac tatagttgcc 5940 gcggatgttg gggaatacat acttgcacta gtatggtgcc gtggcaatgg cttttctgca 6000 ggtgtcatca attcttatgg tgccttggct gacacctcct tcaatctaga ctccctgcgt 6060 gcagattcca acggagtcat gaccttgttg aatagggcag ttccctattc gtctctctgt 6120 gctcttcgta tgaccagagg tgtgccacct acctcggacg atgagcttgt tgcacgcatt 6180 cttgggcaac tccagacccg gcttaaattt gccgctgggt ctgggtcgtc atcggaagat 6240 gatttgtccg atgacgatga ttttgaatgc ctgcgtagta cgcccttaca gcaaatctat 6300 gagggcgtac gcggccttcg tggccacgca gaagcggttg ccgttgtaaa atcacttcaa 6360 tcccgaggcc acgccgagta ggatcgaggg tacaggattg tttgattttt taatcaatta 6420 attcagattt attaattggc 6440 //