ID Y15936; SV 2; linear; genomic RNA; STD; VRL; 7003 BP. XX AC Y15936; XX DT 19-DEC-1997 (Rel. 54, Created) DT 05-NOV-2012 (Rel. 114, Last updated, Version 11) XX DE Avastrovirus 1 complete genome, genomic RNA XX KW capsid precursor protein; genome; non structural protein; KW RNA-dependant RNA polymerase; serine protase. XX OS Avastrovirus 1 OC Viruses; Riboviria; Astroviridae; Avastrovirus. XX RN [1] RX PUBMED; 9568965. RA Jonassen C.M., Jonassen T.O., Grinde B.; RT "A common motif in the 3' end of the genomes of astroviruses, avian RT infectious bronchitis virus and an equine rhinovirus"; RL J. Gen. Virol. 79:715-718(1998). XX RN [2] RC Revised by [5] RA Jonassen C.M.; RT ; RL Submitted (17-DEC-1997) to the INSDC. RL C.M. Jonassen, National Institute of Public Health, PO Box 4404 Torshov, RL 0403 Oslo, NORWAY XX RN [3] RX PUBMED; 11297680. RA Jonassen C.M., Jonassen T., Saif Y., Snodgrass D., Ushijima H., Shimizu M., RA Grinde B.; RT "Comparison of capsid sequences from human and animal astroviruses"; RL J. Gen. Virol. 82(Pt 5):1061-1067(2001). XX RN [4] RA Jonassen C.M., Jonassen T., Sveen T., Saif Y., Grinde B.; RT "Sequencing and molecular characterization of turkey astrovirus"; RL Unpublished. XX RN [5] RP 1-7003 RA Jonassen C.M.; RT ; RL Submitted (19-JUN-2000) to the INSDC. RL Jonassen C.M., Virology, National Institute of Public Health, Postboks 4404 RL Torshov, 0403 Oslo, NORWAY. XX RN [6] RX DOI; 10.1016/S0168-1702(02)00269-1. RX PUBMED; 12573498. RA Jonassen C.M., Jonassen T., Sveen T., Grinde B.; RT "Complete genomic sequences of astroviruses from sheep and turkey: RT comparison with related viruses"; RL Virus Res. 91(2):195-201(2003). XX DR MD5; 544c1c00d672fe61ceeb4db152950f3f. DR EuropePMC; PMC112117; 10846102. DR EuropePMC; PMC1828050; 17343744. DR EuropePMC; PMC2576171; 18854035. DR EuropePMC; PMC3104002; 21404112. DR EuropePMC; PMC3166150; 21915361. DR EuropePMC; PMC4102142; 20507741. DR EuropePMC; PMC4987400; 27339687. DR EuropePMC; PMC5908792; 29674726. DR RFAM; RF00164; s2m. XX FH Key Location/Qualifiers FH FT source 1..7003 FT /organism="Avastrovirus 1" FT /host="turkey" FT /mol_type="genomic RNA" FT /note="provided by Dr. Y.M. Saif, Ohio State University" FT /db_xref="taxon:1239437" FT CDS 11..3310 FT /product="nonstructural protein, putative serine protase" FT /note="ORF1a" FT /db_xref="GOA:Q9JH70" FT /db_xref="InterPro:IPR009003" FT /db_xref="UniProtKB/Swiss-Prot:Q9JH70" FT /protein_id="CAB95005.1" FT /translation="MAAAAASALGASAPKALAPADGPIVAGLDKLVNLEGVHDLFEAMR FT GAYGEDPAWKGLMSCDVVYLKDITTAIGVKDTSVGIFRKFSDGCSWCPTGAECFLSMKD FT LAYMKAQSAKAQRLTASLATTSNLIARAMRAESELKRARDEERKVDARYKDILEHSLAA FT RKALQKELDETRERELHLLKELGKRSSIRTKAFSFFDWLFMAVVFFLFLHYTSAECVKP FT DFGCLVVNSNLPVPSLTFHDVMARCYNTFGNIVLSSQIDAARLREECEQSANKFLGTHI FT GDPAHKVWCENRLETLIPVECDSSEFLEIFTSNLNAFMVSVSQFYKTISYYKLDALVTF FT AFSAALATNKLKMVMVLPLLLVALYLNVPPITVTIASVIFQPLILPFVGFQLVFPNFLP FT YNLFVAWVWMVCQAFFSSDGVKLLVSVSTALVQVVFLAVWSISVIVLQQLSIPMVAQIL FT LFVATLTVSVGVKFANSTITVVHPDGNTEKVSRVTLVRQSMAKRISQIKQSLTIRGVIP FT SGPNRFDSIVVVEGQGGSGVGWRFMNSIFTAGHVVQGSKFVTIKSESTQVKVKVKRVID FT LFECVDTLVEIPLTKEFQHIKPLRLAKKVEDSYLQLCAFKPDMVEKASYQGWCTIDSGF FT IFNSFNTQFGNSGAPYVDSDGRLVGMHLGSQGVISQGVVLVDTLKTQFLAQQSQIDDQL FT MERIIEGTKVSHAAILTELDRMRTKVEEVALVSARVNQLESQLKDLYEFSSNSIKCLSD FT DIEKMVCAQLFDEINLQSVMEKISALPPTEKLAKLVEVFVEQKKKGKTKRTARGGKHAL FT GKKYLSKAHFSRMRMLTEEEYNKMVEDGFSPDEIKEVVDQLREQAWQNYLIDNDIGEDD FT DLDWYDDMLEDERLNEEIDRRVEAALEDRGELAYQKIRRTFVDQALIHLITLKKGNWQT FT TKVECQPEREEAYKEQFQKAVKQEDLTEGTSYAIYSAGDATILIENKEIDHTEIKPVTT FT GAKTVQEYPKDARTTVATFDDNKKDIVKTKRTTEIVLEQRKKTCRTCGETRPHNHKMCR FT DRHTRRFCFWCGVVHSDVEGHSRDLKCPKCSAGFANLREMEQHAVTTCSKN" FT CDS 3301..4839 FT /exception="reasons given in citation" FT /product="nonstructural protein, putative RNA-dependant RNA FT polymerase" FT /note="ORF1b" FT /db_xref="GOA:Q9JH69" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="UniProtKB/Swiss-Prot:Q9JH69" FT /citation=[4] FT /citation=[3] FT /protein_id="CAB95006.3" FT /translation="KKLDSHPEPSRVFQPLDFGLGIFDWRFDLQPIRHHVAVPMNVEVL FT GYIPVDRLVERRNVITDPLLKLVEPWRQETYGPAVWTIKAYNKMFEKFFYSEPLEFAQL FT DSSILNLADSYCLQEHDYMSGSQIVPITSTEKNLDSTPGYPKFKVFSTEREYLSTCGWD FT EYKTVWQVGPREKPLWWCFLKTEVLKLAKIEQDDIRMILCTDPVFTRIGAAFEQHQNSL FT MKLETENHHAQVGWSPFFGGIHRRATRLYGEHRYYVELDWTRFDGTIPPELFRRIKLMR FT FFLLDPKYKTPENRDRYNWYVENLIDKVVLLPTGEVCKIYGGNPSGQFSTTVDNNFVNV FT WLTVFELAYLFYKEHNRLPTICEIKKHTDWICYGDDRLLAVDKRFINSYDTAAVIAMYK FT DVFGMWVKPDNIKVFPSLEGVSFCGMVWTKRKGQYVGKPNVDKILSTLSDPVSRLPDIQ FT SLWGKLVSLRLLCENESDEVVDYLDKQIESVSRHAKEAGIALPKIGPDFYAEIW" FT misc_feature 3301..3306 FT /function="ribosomal frameshift slippery site" FT CDS 4858..6873 FT /product="capsid protein precursor" FT /note="ORF2" FT /db_xref="GOA:Q9JH68" FT /db_xref="InterPro:IPR004337" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/Swiss-Prot:Q9JH68" FT /protein_id="CAB95007.1" FT /translation="MSAPAGKAGPKAQKKCKVVTQKTKTVPKKTKQQKPRKVRLQKVER FT QVKTLKAKTRGPKISDTFSTVVTVGRIIGNNDDSLTRQLKVFVNPLLMKNQDSGSTSSP FT LSIRASQYGLWKIAKLHVYFTPLAGSANVIGTVSFASLEQESGVATAESPDTIKAKYHA FT EVPIGSRFVWKVPPRMLTGPREGWWNMDSGDDPTNSVGPSISFWTYLKTILALSTATTT FT SYLGSLFLIEIRCTYLFSNYAPKPNLAIMVNEKITTTQPVTLTNLSDGSLVMTTTDTRL FT CALLDNDRGPRGPNAQTNGPGEKFWAVSTLVVDTVAASIGPWGWLLKGGWWVIRKIFGA FT ANTTSTYAIYASVEDAAKDSRIYQPVSGTQTLAAGDVYVTQLTQPNVNEAGSTSLGFSP FT PTPPAPTGSYLPLPQAAGVPGIPPQYTFSDGQYTAATTWSGTQLYLTGVPATKTVSGSN FT EMFGVENNTMSRANIDRVQIYDFTTTGIIFLGGQNRSGGAIHTAKTLIVALKTATTKAP FT WLAADATGTNWAMPSWVGFPVPGAGDHFLQMQNSTDRTTHTTPVGVYFLVAYGATNKLV FT AFWAAPTDVQAEPTSLMTLYNVDAGRAPITAGLNFTTAMTEYSDDDDDAESDISSLFAP FT DEVDWKFKIEASSSRHLEEELQFWKSKATQLMLEKN" FT stem_loop 6871..6913 FT /note="stem loop-2 like sequence" XX SQ Sequence 7003 BP; 2030 A; 1380 C; 1669 G; 1919 T; 5 other; ccgaagtggg atggcggctg ccgccgcttc ggcgcttggc gcttcggcgc ccaaggctct 60 tgctccagct gatgggccca tagtggccgg cctcgacaaa ctagtgaacc tggaaggggt 120 tcacgacttg ttcgaggcca tgcgaggggc ttatggtgaa gatccagcat ggaaaggctt 180 gatgtcttgt gatgttgtgt atcttaagga tatcacaact gctattgggg tgaaagacac 240 atctgtaggc atcttccgta aattttctga cggctgctct tggtgtccaa caggggcaga 300 gtgctttctt agcatgaaag atttggccta catgaaagcc cagtcagcaa aagcacaaag 360 actcacagcc tccctcgcca caacatctaa tctgatcgca agggcgatgc gagcggaatc 420 tgaactcaag cgcgccaggg acgaagaaag aaaagttgat gctaggtata aggatatatt 480 agagcactct cttgcagcga ggaaggccct acagaaagag cttgatgaaa cgcgtgagcg 540 tgagcttcat ctgctcaaag agctgggaaa acgcagttcg attaggacta aggcgttcag 600 cttttttgac tggctcttta tggcagtggt cttcttcctt ttcctacatt acacgagtgc 660 tgaatgtgtc aaaccagact tcgggtgcct agttgtgaac agcaatttgc ctgtcccgtc 720 cctgactttt catgatgtaa tggcgcgttg ctacaacacc tttggcaaca tagttctgtc 780 atctcaaatt gatgctgcca ggctacgtga agagtgtgaa cagagtgcta ataagtttct 840 tggcacgcat attggtgatc cagcacataa agtatggtgt gagaataggc ttgagacact 900 tattccggtt gagtgtgatt cttctgaatt tcttgagatt tttacatcta atctcaatgc 960 gttcatggtc tcagtctcac aattttataa gacaatatca tactacaagt tagatgcact 1020 tgtcaccttt gctttttcag ctgcgctcgc aaccaacaaa ttgaagatgg taatggttct 1080 accacttcta ttggtagcat tatacttgaa tgttccacca atcacagtta caatagcaag 1140 tgttattttc caaccactga tattgccgtt tgtagggttt caattggttt tcccaaattt 1200 tttaccctac aacctctttg tggcatgggt atggatggtg tgccaggcct tcttttcttc 1260 agatggagtg aagttgttag tgtcagtgtc cactgcactt gttcaggttg tgtttcttgc 1320 agtctggtct attagtgtta tagtattaca acagctctca atccccatgg tagctcaaat 1380 attactgttt gttgctacgt tgacggtgtc agttggggtt aagtttgcaa attcaactat 1440 aactgttgta catccagacg gaaacactga aaaagtgtcg cgtgtaacac tcgtgcggca 1500 aagtatggca aaaaggattt cacagattaa gcagtctctt acaattagag gtgttatacc 1560 atctggacca aataggtttg actctatagt ggttgttgaa ggacaaggag gctctggggt 1620 tggctggcgg tttatgaact caattttcac agctggccat gttgtgcaag gttctaaatt 1680 tgtaactatc aaaagtgagt caacacaagt gaaagttaaa gtcaagcgtg ttattgactt 1740 gtttgaatgt gtggacacac tggtggaaat accccttacc aaggaatttc agcacataaa 1800 accacttagg cttgcaaaga aggttgaaga cagctacctt caactgtgtg cttttaaacc 1860 agatatggta gagaaagctt cctatcaggg ttggtgtacc attgattcag gtttcatatt 1920 caattctttt aacacacagt ttggaaatag tggtgcaccg tatgttgatt ctgatggtcg 1980 cctagtagga atgcatcttg gttcacaagg agttatttcc caaggggtag ttcttgtaga 2040 cactttaaaa acacagttcc ttgctcaaca atctcaaatt gatgatcagt tgatggaacg 2100 tatcatagag ggtactaagg tatcacatgc agctattttg acagaattgg ataggatgag 2160 aactaaagtt gaggaggtgg cgcttgtgtc tgctagagtt aaccaacttg agtctcagct 2220 taaggacctc tatgagtttt cgtcaaactc tattaagtgt cttagtgatg acattgagaa 2280 aatggtttgt gcccagctgt ttgatgagat caatttacaa tctgttatgg aaaagatttc 2340 agcattgcca ccaaccgaaa aactggctaa gcttgtggaa gtgtttgttg aacagaagaa 2400 aaaagggaag acaaagagaa cagcaagggg tggaaagcat gctctgggga aaaaatatct 2460 ttccaaagca catttctcac gtatgaggat gcttactgaa gaagagtata ataaaatggt 2520 agaggatggg ttttctcctg atgaaattaa agaggttgtt gaccaattga gagaacaggc 2580 atggcagaat tatctcatag acaatgatat tggtgaagat gatgatctcg actggtatga 2640 tgatatgtta gaagatgaac gcctaaatga agaaattgat aggcgggtag aagctgcact 2700 agaagatagg ggtgaacttg catatcaaaa gatcaggcga acttttgttg atcaggcatt 2760 gatacattta atcaccttga aaaaaggtaa ttggcaaact acaaaggtag agtgtcagcc 2820 tgagcgagaa gaggcctata aggagcaatt tcaaaaagca gtgaagcaag aagaccttac 2880 tgagggaact agttatgcta tttatagtgc aggggatgcc actattttga ttgaaaataa 2940 ggaaatagat catactgaga tcaagcctgt gactactggt gctaagacag ttcaggaata 3000 cccaaaggat gcaaggacaa cagttgcaac atttgatgat aataagaaag atattgtcaa 3060 aacaaagaga acaactgaaa tagtgctgga acagaggaag aaaacttgta gaacatgtgg 3120 tgagactaga ccacacaatc ataaaatgtg ccgcgatagg cacactagga ggttttgttt 3180 ctggtgtggg gtggtccaca gtgatgtaga agggcactcg agagatctta agtgcccaaa 3240 gtgctctgca ggttttgcaa acctgcgtga aatggagcag catgctgtca ctacgtgttc 3300 aaaaaactag atagtcaccc tgagccaagc agggtgttcc agcctcttga ttttggactt 3360 ggcatttttg attggagatt tgacttacaa cccattagac atcatgttgc agttcctatg 3420 aatgtggaag tcctgggcta tattccagta gatagattgg ttgagaggag aaatgtgata 3480 acagacccac tccttaagtt ggtagaaccc tggagacaag aaacttatgg cccagcagta 3540 tggacaataa aagcatataa taaaatgttt gaaaaatttt tttatagtga acctcttgaa 3600 tttgcacaat tggattcatc tatactaaat ttggcagatt catattgctt gcaggaacat 3660 gactatatgt ctgggtcaca gattgtgccc attacttcaa ctgagaaaaa cctggactca 3720 acacctgggt atccaaagtt taaagtgttt tctacagaaa gggaatacct gtccacatgt 3780 ggctgggatg aatataaaac agtttggcag gtgggaccgc gtgagaagcc actytggtgg 3840 tgttttctca agacggaggt tcttaaactt gctaagattg aacaggatga cataagaatg 3900 atcctgtgta ctgacccagt gtttactagg ataggtgcag catttgaaca acatcagaat 3960 tccctaatga aattggaaac tgaaaatcat catgcccagg ttgggtggtc cccctttttt 4020 ggaggtatac atagaagggc cacccggtta tatggtgaac ataggtacta tgtcgaactt 4080 gattggacta gatttgatgg caccatacca ccagaattgt ttagaagaat taagcttatg 4140 cggttctttc ttcttgatcc taagtataag acacctgaaa atagggatcg ttacaattgg 4200 tatgtagaga accttattga taaggttgtc cttctcccta caggtgaggt ttgtaagatc 4260 tatggtggca atccatctgg acaattttct accacagttg acaacaactt tgttaatgtt 4320 tggttaactg tctttgagtt agcttatctt ttttacaagg aacacaatag gctacccacc 4380 atctgtgaaa tcaaaaaaca cacagattgg atttgttatg gtgatgaccg gcttttagca 4440 gttgacaaga ggtttataaa ttcctatgat actgctgcag ttattgccat gtacaaagat 4500 gtgtttggta tgtgggttaa gcctgataac attaaggtgt tcccctctct tgaaggagtt 4560 tccttttgtg gtatggtttg gacaaaaagg aaaggtcaat atgtggggaa acctaatgtg 4620 gayaagatat tgtcaacatt gagtgatcct gtgtcaaggt tgccagacat acaatctctg 4680 tggggaaaac ttgtgtcact cagattactg tgtgaaaatg aatcagatga agttgttgac 4740 tacttggata aacagattga gagcgtttct cgccatgcca aggaagccgg cattgcgtta 4800 ccgaaaatcg ggcccgattt ttacgcagaa atttggtgag tggtggaccg aaatattatg 4860 tcggctccgg ctggcaaagc tgggcctaag gcccagaaga aatgcaaagt agtcacgcag 4920 aaaaccaaaa cagtgccaaa gaagaccaaa cagcagaaac ctaggaaagt tcggctacag 4980 aaggttgagc gccaggtcaa aaccctgaaa gcaaaaacac gtggtccaaa gatctcggac 5040 actttttcaa ccgtagttac tgtaggacga atcataggaa ataatgatga ttcactcacg 5100 cgtcagctta aggtgtttgt aaatccactt ctgatgaaga accaagactc aggcagtaca 5160 tcttctccac tttctatcag ggcatcacag tatggacttt ggaaaattgc caagctacat 5220 gtgtatttca cacccctggc ggggtcagct aatgtgattg ggacagtctc ctttgcttct 5280 ctagagcaag agagtggggt cgccacagcc gaatcgcctg atacaattaa agctaagtat 5340 catgcagaag ttccaattgg ttctaggttt gtgtggaagg tcccaccaag aatgctcaca 5400 ggccccaggg aaggatggtg gaatatggat tcaggagatg atcccactaa ttctgtgggt 5460 ccatccatct ccttttggac atatttgaaa accatactag ccctttccac cgccactaca 5520 acatcgtacc ttggctcgct tttcctgata gagatcaggt gcacatacct gttttccaac 5580 tatgccccta aaccaaactt ggctatcatg gttaatgaga aaatcaccac cacacagcca 5640 gttacgctga caaacctgtc agatggctcg ttggtaatga caacaactga cactagattg 5700 tgtgcactcc ttgataatga cagggggccg cgaggcccaa atgcccaaac aaatgggcct 5760 ggcgagaaat tctgggcagt ttccacgctt gttgttgata ctgtggcagc ttcaataggc 5820 ccatggggtt ggctgcttaa aggtggttgg tgggtcattc ggaaaatctt tggagcagca 5880 aatacgacat ccacttacgc tatctatgcg agtgttgaag atgctgcaaa ggattcgagg 5940 atctaccaac ctgtgtctgg aacacagacc ctagcggcag gagatgtgta tgttacccag 6000 cttacacagc caaatgtcaa tgaggctgga tccacctccc tgggcttytc accaccaacc 6060 ccgccagcac caactggctc ctatttgcca ctaccacaag cggcgggcgt gccaggtatt 6120 ccgccacaat acactttttc tgatggacag tatactgctg caacaacttg gagtggcaca 6180 caactctact tgactggtgt accagctaca aaaacagtta gtggttctaa tgagatgttt 6240 ggtgtggaga ataataccat gtcacgagca aatatagaca gagtacaaat ctatgatttt 6300 acaaccacag gcattatatt tctcggtggc cagaataggt caggtggggc catacacaca 6360 gcaaaaactc tgattgtggc acttaaaaca gccacgacca aggctccatg gctagctgct 6420 gatgcaactg gcacaaactg ggctatgcca agttgggttg gatttcccgt gcctggtgct 6480 ggtgaccact ttttgcagat gcagaattcc actgatagga ctacacacac tacaccagtt 6540 ggggtctact tccttgttgc ttatggagcg accaataaat tggttgcttt ttgggcagca 6600 ccaactgatg ttcaagcaga accwactagc cttatgacct tatataatgt ggatgccggt 6660 agagcaccta tcaccgccgg gttaaatttc acaacagcaa tgaccgagta ctctgatgat 6720 gatgatgatg ctgagtcaga tatttcatct ctttttgcac cagatgaagt ggactggaaa 6780 tttaaaattg aggcctcctc gtcaaggcat cttgaggagg aactccagtt ttggaaatct 6840 aaagcaacac agctgatgct tgagaaaaat tgatgccgag gccacgccgg gtaggatcga 6900 gggtacagca tcggtgcact aacttagtta gcgcaccact aatcaaaagg aaaaattttt 6960 aagggttttt ttttcctttt aaggattagc attataaaay cgc 7003 //