Dbfetch
ID Y15625; SV 1; linear; genomic DNA; STD; VRL; 3553 BP. XX AC Y15625; XX DT 31-MAR-1998 (Rel. 55, Created) DT 18-APR-2005 (Rel. 83, Last updated, Version 3) XX DE Potato virus S and genes encoding coat protein and partial replicase DE protein, 25K, 12K, 7K, and 11K proteins XX KW 11 kDa protein; 12 kDa protein; 25 kDa protein; 7 kDa protein; KW coat protein; membrane-associated protein; replicase; KW RNA dependent RNA polymerase; transport. XX OS Potato virus S OC Viruses; Riboviria; Tymovirales; Betaflexiviridae; Quinvirinae; Carlavirus. XX RN [1] RA Matousek J., Schubert J., Dedic P., Ptacek J.; RT "A broad variability of pot ato virus S (PVS) revealed by analysis of virus RT sequences amplified by reverse t ranscriptase-polymerase chain reaction"; RL Can. J. Plant Pathol. 22:22-29(2000). XX RN [2] RP 1-3553 RA Schubert J.; RT ; RL Submitted (18-NOV-1997) to the INSDC. RL J. Schubert, Bundesanstalt fuer Zuechtungsforschung, Inst fuer RL Resistenzforschung, BAZ IFR, Theodor Roemer Weg 4, D- 06449 Aschersleben/P RL O Box 1505, FRG XX DR MD5; e1e5e1b8c65028d6d29f58cc81c23bb0. XX CC Related sequence D00461 XX FH Key Location/Qualifiers FH FT source 1..3553 FT /organism="Potato virus S" FT /isolate="Kobra" FT /mol_type="genomic DNA" FT /db_xref="taxon:12169" FT CDS <1..1069 FT /codon_start=2 FT /product="replicase" FT /note="RNA dependent RNA polymerase" FT /db_xref="GOA:O73520" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:O73520" FT /protein_id="CAA75716.1" FT /translation="LQMYGPFLLQEFLKHVPLKPMHDTRMMAEAKFDFEEKKTQKSAAT FT IENHSNRSCRDWLADMGMVFSKSQLCTKFDNRFRDAKAAQTIVCFQHSVLCRFAPYMRY FT IEKKLNEVLPARFYIHSGKGLEELNKWVIESKFDGLCTESDYEAFDASQDQYIVAFELA FT LMRYLGLPNDLIEDYKYIKTHLGSKLGNFAIMRFSGEASTFLFNTMANMLFTFLRYKLK FT GDERICFAGDDMCANRALFIKDTHEGFLKKLKLKAKVDRTNRPSFCGWSLCSDGIYKKP FT QLVFERLCIAKETANLANCIDNYAIEVSYAYKLGERIKERMSEEELDAFYNCVRVIIKH FT KHLLKSEIRCVCEEV" FT CDS 1105..1788 FT /product="25K protein" FT /function="transport" FT /db_xref="GOA:O73521" FT /db_xref="InterPro:IPR027351" FT /db_xref="UniProtKB/TrEMBL:O73521" FT /protein_id="CAA75717.1" FT /translation="MDVFLQVLNKYKSERVSSTLNKPIVVHSVPGAGKSSAIRELLKLD FT SRFECITRGRPDIPNLEGAFIKAERSGENKLLLVDEYIEGPVPEDAFAIFADPLQSTAV FT SPYRAHFIKTLSHRFAKCTASLLRDLGWDVQAEGQDSVQIADIFTVDPRDTIVYFEPEV FT GELLRSHGVEASCIGEVRGATVEHVTFVTSENGPLVDKAAAFQCLTRHTKSLLILCPDA FT TYTAA" FT CDS 1766..2092 FT /product="12K protein" FT /function="transport" FT /db_xref="GOA:O73522" FT /db_xref="InterPro:IPR001896" FT /db_xref="UniProtKB/TrEMBL:O73522" FT /protein_id="CAA75718.1" FT /translation="MPLTPPPNYTGLYIAAALGVSLAAIVALFTRSTLPIVGDSQHNLP FT HGGRYRDGTKAIDYFKPAKLNSVEPGNHWYAQPWLLVLLLVALICLSGRHAPCCPRCNR FT VHSA" FT CDS 2092..2256 FT /product="7K protein" FT /function="transport" FT /db_xref="InterPro:IPR003411" FT /db_xref="UniProtKB/TrEMBL:O73523" FT /protein_id="CAA75719.1" FT /translation="MVFILAFALSWYALRPGNTSCVLLITGESVRLVNCELTRDLVEAV FT ATLGPLKHL" FT CDS 2298..3182 FT /product="coat protein" FT /db_xref="GOA:O73524" FT /db_xref="InterPro:IPR000052" FT /db_xref="InterPro:IPR013569" FT /db_xref="UniProtKB/TrEMBL:O73524" FT /protein_id="CAA75720.1" FT /translation="MPPKPDPTSSGEAPQAMPLVPPPRNVEEHRVGPSQGHGQNEEAML FT EQRLIRLIELMASKRHNSTLSNISFEIGRPSLEPTPEMRRNPENPNSRFSIDELFKMEI FT RSVSNNMANTEQMAQITADIAGLGVPTEHVAGVILKVVIMCASVSSSVYLDPAGTVEFP FT TGAVPLDSIIAIMKNRAGLRKVCRLYAPVVWNYMLVQNRPPSDWQAMGFQWNARFAAFD FT TFDYVTNGAAIQPVEGLIRRPTPEEAIAHNAHKSMAIDKSNRNERLANTNVEYTGGMLG FT AEIVRNHRNAINQ" FT CDS 3179..3463 FT /product="11K protein" FT /note="membrane-associated" FT /db_xref="GOA:O73525" FT /db_xref="InterPro:IPR002568" FT /db_xref="UniProtKB/TrEMBL:O73525" FT /protein_id="CAA75721.1" FT /translation="MNADRLAMLLLCVHRLGYVLPVEVCVNIISLSAGPVSGGRSTYAR FT KRRARSIGRCWRCYRVYPPICNSKCDNRTCRPGISQNYKVVTFIRGWSN" XX SQ Sequence 3553 BP; 956 A; 767 C; 931 G; 899 T; 0 other; tctgcagatg tatgggccat ttctacttca agaatttctc aagcatgtgc cactgaaacc 60 aatgcatgat acaagaatga tggctgaggc aaagtttgat tttgaggaga agaagacaca 120 gaagagcgca gctacaattg agaaccacag caacagatct tgtagggact ggctggccga 180 catgggcatg gtcttctcaa agtctcaact ctgcacaaag tttgacaatc ggttcaggga 240 tgcgaaagca gcacaaacca ttgtctgttt ccaacatagc gtcctatgcc gctttgctcc 300 gtacatgagg tacattgaaa agaaactcaa tgaagtatta ccggcaaggt tttacattca 360 ttcaggcaaa ggcttagaag agctaaataa atgggtcata gagtccaaat tcgacgggtt 420 gtgcacagag tctgactatg aagcctttga cgctagtcaa gaccagtaca tagtggcgtt 480 tgagttagca ttgatgaggt atttgggctt gcccaatgat ctcatagagg attacaagta 540 catcaaaacg cacctgggct caaagttagg gaactttgcc ataatgcgct tctccggtga 600 ggctagcacc ttcttgttca acacaatggc caatatgctt ttcacattct taagatacaa 660 gctgaaaggg gatgagcgga tatgcttcgc tggtgacgac atgtgcgcca acagggctct 720 attcattaaa gatactcatg agggcttcct caagaagctt aagttgaagg cgaaggttga 780 taggacaaac cgaccaagtt tctgcgggtg gagcttgtgc tcagatggga tttacaaaaa 840 accgcagctg gtctttgaga gactttgtat cgccaaggaa acggccaact tggccaattg 900 cattgacaat tatgctattg aggtgtccta tgcttacaag ctcggggaga ggattaagga 960 gcgcatgtca gaggaggaac tggatgcctt ctataattgt gtgagggtga ttattaagca 1020 caagcatttg ctgaagtccg agatccgctg tgtgtgtgag gaggtttgat tagcttaggt 1080 aatcagctta gtagtattga atatatggat gtgtttttgc aagtcttgaa taaatataag 1140 tctgagcgtg ttagtagtac tttaaataaa ccaatagttg ttcatagtgt cccgggagct 1200 ggtaaaagtt ctgcaattcg ggagttgctt aagttagata gtaggtttga gtgcatcacc 1260 cgtggccggc cagacatccc gaatctagag ggggctttca ttaaggctga acgcagtggg 1320 gagaataaat tgctgctggt tgatgagtac atagaggggc cggtcccaga ggacgccttt 1380 gcaatctttg cagatccact tcagagtacc gctgtgagcc cataccgagc acacttcatc 1440 aaaacattga gccatcgctt cgccaagtgc accgcttccc ttttgagaga tttgggttgg 1500 gacgtacagg cagaaggtca agattcagtt caaatcgcag atatcttcac agttgaccct 1560 agggatacta ttgtgtactt cgagccagaa gtcggagagt tactgaggag ccacggtgtc 1620 gaggcgagct gcattggtga ggtgcgtggg gctactgttg aacacgtaac cttcgtcact 1680 tctgagaacg gcccactggt tgataaggct gctgcttttc agtgcttaac gaggcacact 1740 aagagtttac tcatattgtg ccctgatgcc acttacaccg ccgcctaact acacagggtt 1800 atacatcgca gcggctttag gagtgtccct tgctgccata gttgcattgt tcactaggag 1860 cacactgcca attgttgggg attcgcagca caacctccca cacgggggac ggtatcgcga 1920 cggcactaaa gctattgatt acttcaaacc cgcgaaactg aattctgttg agcctggtaa 1980 tcactggtac gctcaacctt ggctgctagt tctacttcta gttgcgctca tctgcttgtc 2040 agggcgtcat gctccatgct gtccaaggtg caaccgggtg cacagtgctt aatggttttc 2100 atcttggcat tcgcgctaag ttggtatgcg ctcaggccag gaaacacaag ctgcgtccta 2160 ctcattactg gggaatcagt ccggctagtc aattgcgagc tcacaagaga tttagtggaa 2220 gctgtagcaa cattggggcc gttgaagcac ctttaggttc acaggtaata gttcgaagaa 2280 actgtcccac agagaaaatg ccgcctaaac cagatccgac aagctcagga gaggcaccac 2340 aagcaatgcc gcttgtgccg ccgcctcgga atgtagagga gcatagagtt ggcccaagtc 2400 aagggcacgg gcagaatgaa gaggctatgc tggaacagag gctcatcagg ttgattgaac 2460 tcatggcctc aaagaggcac aattcaacat tgagcaacat ctcttttgag ataggtaggc 2520 cctcgcttga gccgacccct gaaatgcgga ggaatccgga gaacccaaac tcgcggtttt 2580 caatcgatga gctgttcaag atggaaatcc gatctgtgtc caacaacatg gcgaacaccg 2640 agcaaatggc gcaaatcact gctgacattg ctggacttgg ggtccccact gaacacgttg 2700 caggggttat actgaaagtg gtgatcatgt gtgcaagcgt gagtagctct gtttatctag 2760 atccagcagg gactgtggag ttccctacag gcgcagtgcc cttggactcg atcattgcaa 2820 tcatgaagaa tcgcgcgggg ttgagaaaag tgtgcaggct gtacgctcca gtcgtgtgga 2880 attacatgct agttcagaat aggccacctt cggattggca ggccatggga tttcaatgga 2940 atgcacgctt cgccgcattt gacacattcg attatgtgac taatggggct gcaatccagc 3000 ccgtagaggg gctcatacgc aggcccacac ctgaggaagc aatagctcac aatgcccaca 3060 agagcatggc aattgataag tcgaacagaa atgagcgatt agccaacact aatgttgagt 3120 acactggagg gatgcttggc gctgagattg tgcgcaatca ccgtaatgcg atcaaccaat 3180 gaacgcagac cgtttagcca tgttattatt gtgtgtccat cgactgggat atgttttgcc 3240 agttgaagtt tgtgtgaata taataagcct aagcgctggt ccagtttctg ggggtcgttc 3300 cacttacgct cgtaagcgta gggcccgcag cattgggcga tgctggcgat gttatcgtgt 3360 ttatccacct atttgtaatt ccaagtgtga taatagaaca tgccgtccag gcattagtca 3420 aaattataaa gtagtgactt ttattcgggg ttggagtaac tgaggtgata ccacccatgg 3480 tgcaaagtca gagtttcgca taaaacttaa ataatatata agtgtgccac tataaagata 3540 atatgcatat gaa 3553 //