ID Y14459; SV 1; linear; genomic RNA; STD; VRL; 7351 BP. XX AC Y14459; XX DT 08-AUG-1997 (Rel. 52, Created) DT 14-NOV-2006 (Rel. 89, Last updated, Version 7) XX DE Porcine enterovirus type 9, complete genome sequence, isolate UKG/410/73 XX KW 1a; 1B; 1C; 1D; 2A; 2B; 2C; 3A; 3B; 3C; 3D; polymerase; polyprotein; KW protease; VP1; VP2; VP3; VP4; Vpg. XX OS Porcine enterovirus 9 OC Viruses; Riboviria; Picornavirales; Picornaviridae; Enterovirus; OC Enterovirus G. XX RN [1] RA Peng J.H., McCauley J.W., Kitching R.P., Knowles N.J.; RT "Nucleotide sequence of porcine enterovirus serotype 9 and its relationship RT to other members of the family Picornaviridae, genus Enterovirus"; RL Unpublished. XX RN [2] RP 1-7351 RA Knowles N.J.; RT ; RL Submitted (06-AUG-1997) to the INSDC. RL Knowles N.J., World Reference Laboratory for Foot-and-Mouth Disease, RL Institute for Animal Health, Pirbright Laboratory, Ash Road, Pirbright, RL Woking, Surrey GU24 0NF, United Kingdom. XX DR MD5; 09abbfca5f0892de1825a378b74b46e6. DR EuropePMC; PMC104435; 9971773. DR EuropePMC; PMC114071; 11160660. DR EuropePMC; PMC137026; 11992011. DR EuropePMC; PMC3393563; 22628395. DR EuropePMC; PMC3446592; 22923807. DR EuropePMC; PMC4019603; 24824640. DR EuropePMC; PMC5487566; 28490584. DR RFAM; RF00048; Entero_CRE. DR RFAM; RF00229; IRES_Picorna. XX FH Key Location/Qualifiers FH FT source 1..7351 FT /organism="Porcine enterovirus 9" FT /mol_type="genomic RNA" FT /db_xref="taxon:64141" FT 5'UTR 1..772 FT CDS 773..7279 FT /product="polyprotein" FT /db_xref="GOA:O41174" FT /db_xref="InterPro:IPR000081" FT /db_xref="InterPro:IPR000199" FT /db_xref="InterPro:IPR000605" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR001676" FT /db_xref="InterPro:IPR002527" FT /db_xref="InterPro:IPR003138" FT /db_xref="InterPro:IPR003593" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR014759" FT /db_xref="InterPro:IPR014838" FT /db_xref="InterPro:IPR027417" FT /db_xref="InterPro:IPR029053" FT /db_xref="InterPro:IPR033703" FT /db_xref="InterPro:IPR036203" FT /db_xref="UniProtKB/Swiss-Prot:O41174" FT /protein_id="CAA74807.1" FT /translation="MGMQMSKNTAGSHTTVTQASGGSHINYTNINYYSHSASASQNKQD FT ITQDPSKFTQPMVDIMKESAVPLKSPSAEACGYSDRVAQLTLGNSTITTQEAANITVAY FT GEWPSYLSDLDATAVDKTTKPGVSCDRFYTLPGKKWEATTKGWEWKLPDALTELGVFGQ FT NCQFHFLYRCGWSIHVQCNATKFHQGTLLVVAVPDHQLGTTYQPEFDNVMPGKAGREVK FT YPYNFEDGTSLANSLIYPHQWINLRTNNSATLVLPYANAIPMDSPIRHSSWSLLVIPVV FT PLACATGTTPFVGITITLAPMFSEFSGLRRAIAQGIPTTNTPGSYQFLTTDEDSSACIL FT PDFTPTQEIHIPGEVKNLQALCQVESLLEINNVDGKTGIERLRLEVSTQSELDRQLFAL FT KVSFTEGEIMSKTLCGVMCSYYTQWSGSLEITFMFTGSFMTTGKLLLAYTPPGGSAPAS FT REDAMLGTHVIWDFGLQSSITLVVPWICGGYYRDVNRANNYYAAGYVTGWFQTNMVIPP FT DFPSTAYILCFLAAQPNFSLRILKDRPDITQTAALQAPVETALNSAISSVIAGITAQDT FT QPSSHNISTSETPALQAAETGASSNASDEGMMETRHVVNTNTVSETSIESFYGRCGLVS FT IKEIADNKQVEKWLVNFNEFVQLRAKIELFTYMRFDIEFTLVATFTKGNSASQHPVQVQ FT VMYLPPEQLLQLQQDSYAWQSAANPSAIFSANTVPARFSVPFVGTANAYTIMYDGYNVF FT GSNRPSADYGMINSSHMGSMAFRAISQLQATEKVKFMDLCQVKDVRAWCPRAPRMAPYK FT YIRNPVFETQDRIVPNRNNITTTGAFGQQSGAIYVGNYKIMNRHLATHEDWENVEWEDY FT NRDILVARTTAHGADKLARCHCNTGVYYCKSRNKHYPVTSRVQASIGSRLVSTTQLDTR FT PICSLPSGISEPGDCGGILRCQHGVIGIVTAGGQGVVGFADVRDLFWVEHEAMEQGLTD FT YIQQLGNSFGQGFTAEITNYASQLSEMLIGADGMVERCLQTFVKVISAVVIATRSQGDV FT PTILATLALIGCDGSPWRWLKRQFCGIFKIPYVEKQGDDWLKKFTSYVNAFKGLDWVAE FT KIMKFIDWMKNKLIPQARERQEFTTNLKTLPLLEAQVATLEHSCPTTEQQETIFGNIQY FT LAHHCRRYAPLYAAEARRVYALEKRILGYIQFKSKQRIEPVCLLIHGTAGTGKSLATSI FT IGRKLAEYEHSEVYAIPPDSDHFDGYQQQAVVVMDDLNQNPDGKDMVAFCQMVSTVPYH FT VPMAAIEEKGMLFTSSYVLASTNSGSIHPPTVSNSKALSRRFAFDVDIEVSEHYKTHNG FT TLDVVNATQRCEDCCPANFKTCMPLICGEAYQLVDRRNGMRYSIDTMISAMRAEWKRRN FT QVGLCYVRLFQGPPQFKPLKISVDPEIPAPPAIADLLASVDSEEVREYCKKKGWIVEVP FT VTATTLERNVSIATTILSSLVLLTSVITLVYLVYRLFAGYQGPYTGLPNAKPKPPVLRE FT VRAQGPLMDFGVGMMKKNIVTVRTGAGEFTGLGVHDHVLVLPKHSHPAEIVVVDGKETP FT VEDAYNLTDEQGVSLELTLVTLKRNEKFRDIRAMIPENPCGTNEAVVCVNTSNFPNAFL FT PVGKVEYYGYLNLAGSPTHRTMMYNFPTKAGQCGGVVLSTGKVLGIHIGGNGAQGFCAA FT LKRSYFTKPQGKIDWVEPSKKHGFPVINAPSKTKLEPSVFFDVFEGVKEPAALHPKDPR FT LEVNLEEALFSKYTGNVDIEMPEEMKEAVDHYANQLLALDIPTEPLSMEEAIYGTEGLE FT ALDLTTSAGYPYVTMGIKKRDILNKETRDVKKMQECIDKYGLNLPMVTYIKDELRSKEK FT VKKGKSRLIEASSLNDSVAMRCYFGNLYKAFHQNPGTLTGCAVGCDPDTFWSKIPVMMD FT GELFGFDYTAYDASLSPLMFQALQMVLEKIGFGEGKHFIDNLCYSHHLFRDKYYFVKGG FT MPSGCSGTSIFNSMINNIIIRTVVLQTYKGIELDQLKIIAYGDDVIASYPYRIDPAELA FT KAGAKLGLHMTPPDKSETYVDLDWTNVTFLKRNFVPDEKYPFLVHPVMPMKEIYESIRW FT TRDARNTQDHVRSLCLLAWHNGRKEYEEFCRKIRSVPVGRALHLPSYSSLLREWYEKF" FT mat_peptide 773..959 FT /codon_start=1 FT /product="1A (VP4)" FT mat_peptide 980..1717 FT /codon_start=1 FT /product="1B (VP2)" FT mat_peptide 1718..2548 FT /codon_start=1 FT /product="1C (VP3)" FT mat_peptide 2549..3277 FT /codon_start=1 FT /product="1D (VP1)" FT mat_peptide 3278..3727 FT /codon_start=1 FT /product="2A (protease)" FT mat_peptide 3728..4024 FT /codon_start=1 FT /product="2B" FT mat_peptide 4025..5011 FT /codon_start=1 FT /product="2C" FT mat_peptide 5012..5278 FT /codon_start=1 FT /product="3A" FT mat_peptide 5279..5344 FT /codon_start=1 FT /product="3B (VPg)" FT mat_peptide 5345..5893 FT /codon_start=1 FT /product="3C (protease)" FT mat_peptide 5894..7276 FT /codon_start=1 FT /product="3D (polymerase)" FT 3'UTR 7280..7351 XX SQ Sequence 7351 BP; 2117 A; 1616 C; 1723 G; 1879 T; 16 other; nnnnnnnnnn nnnnnnctag tacactggta tgccttacct cggtattacg gtaccgatgt 60 atatagtacc tttgtacgcc tgttttatat ccctccccca catgtaacct tagaagttta 120 cacaaacaaa gaccaatagg agtccaacac ccagttggat tgcggtcaag cacttctgtt 180 tccccggacc tagtagtgat aggctgtacc cacggccgaa gatgaacccg tccgttatcc 240 ggctacctac ttcgggaagc ctagtaacat tctgaagtct ctgaggcgtt tcgctcagca 300 cgaccccggt gtagatcggg ctgatgggtc tccgcatacc ccacgggcga ccggcggagg 360 cgcgttgcgg cacgctatgc gaaagccata ggacgcctct tagatgacag ggtgtgaaga 420 gcctactgag ctgggtagta gtctccggcc cctgaatgcg gctaatccta accacggagc 480 gtccaccagc aatccagctg gcagggcgtc gtaacgggca actctgtggc ggaaccgact 540 actttgggtg tccgtgtttc cttttgatcc tattttggct gcttatggtg acaacgataa 600 gttgttatca taaagctctt gggttggcca cctggaaaaa gttatcagtg tttgatattg 660 ttcggctctc acgcctacca ataagacaag ccctatattt acttgttgca ttttactcgt 720 cagaagaaat cacagagtat catttggatt tgttactcac attaaggaca agatgggtat 780 gcaaatgagt aagaacaccg ctgggtctca caccactgtg acccaagcca gtggaggctc 840 ccacataaat tacaccaaca ttaactacta cagtcactcc gcgagcgcta gtcaaaataa 900 acaagacatc actcaagatc ctagcaaatt tactcaacct atggtagata tcatgaaaga 960 atctgccgtc cccttaaagt caccatctgc agaggcttgt ggttacagtg atagggtggc 1020 tcaattgacc ttaggaaaca gcactatcac tactcaagag gcagcgaaca tcacagttgc 1080 ctatggtgaa tggccatcgt acttaagtga tttggatgct accgctgtag acaagactac 1140 caaaccaggc gtttcatgtg atagattcta cacattacct ggaaagaaat gggaggcaac 1200 tactaaagga tgggagtgga aacttccaga cgcactgaca gagcttggcg tttttggaca 1260 gaattgtcag ttccatttct tatataggtg tgggtggtct atacacgtgc aatgtaatgc 1320 cacgaagttt catcagggca cattactagt ggtagcagta cctgaccacc agttaggaac 1380 aacatatcaa cctgagtttg ataatgttat gccaggaaaa gcaggaagag aggtcaagta 1440 tccatacaac tttgaggatg gaaccagtct agccaactca cttatatacc cgcaccaatg 1500 gatcaacctg agaacaaaca actctgccac acttgtacta ccatacgcta atgcgattcc 1560 aatggatagt ccaatcagac acagcagctg gtctcttttg gtgatacctg ttgtaccatt 1620 ggcctgcgct actggtacta ctccattcgt tgggattacc attacattgg cccccatgtt 1680 ttcagaattc tcagggctac gcagagcaat agcccaaggt attcctacta caaacacgcc 1740 aggttcctac cagttcctca ctactgatga agatagtagt gcatgtatac ttcctgattt 1800 cacaccaacc caagaaatcc acattccagg agaggtcaag aatctacagg cactgtgtca 1860 agttgagtcc ttactggaaa tcaacaacgt ggatggtaaa acagggattg agagattaag 1920 gttggaagtt agcacacaat ctgaattaga cagacaattg tttgctttga aagttagctt 1980 cacagaaggg gagataatgt ctaagacatt gtgtggggtg atgtgttcgt attatactca 2040 atggtccggt tcacttgaga taactttcat gtttactggg tcattcatga caacggggaa 2100 gctgctgtta gcctataccc ctccaggtgg tagtgcacca gctagtagag aagatgccat 2160 gcttggcact catgtaatat gggattttgg attacagagc tccataaccc tagttgtccc 2220 ttggatctgc ggcggatatt atagagacgt gaacagggca aacaactact atgcagctgg 2280 gtatgttacc gggtggtttc agacaaacat ggtcatacca ccagattttc catccactgc 2340 ctacatactt tgctttttgg ctgcacaacc aaatttctca ttgagaattc taaaggatag 2400 acctgacatt acacaaacag cagcattgca agccccagtt gagactgcac ttaatagtgc 2460 gatctccagc gtcattgcag gaattacagc ccaagataca caacctagct cccacaatat 2520 ttcaacttca gaaacacctg cactgcaggc ggcagaaacg ggcgccagct ctaatgctag 2580 tgatgagggc atgatggaaa ctagacatgt cgtcaataca aacacagtat cagaaacatc 2640 tatagagagc ttctatggtc gttgtggtct cgtatccatc aaagaaatag ccgataacaa 2700 gcaggttgag aaatggttgg ttaattttaa tgaatttgta cagctaaggg ccaagattga 2760 gcttttcacc tatatgagat ttgacatcga gtttactctt gttgccacct ttaccaaagg 2820 aaattctgca tcacaacatc cagtccaagt acaggttatg tatttgccgc cagagcagtt 2880 gctccaatta cagcaagact cctatgcttg gcagtcagca gctaacccat cagcaatctt 2940 tagtgccaac actgttcctg ctagattcag cgtcccgttt gtgggaacag caaatgcgta 3000 cacgattatg tacgacggat acaatgtgtt tggatcaaac agaccatcag ctgattatgg 3060 catgatcaac agcagtcaca tgggtagcat ggccttcagg gcaataagcc aattgcaagc 3120 aacagaaaag gttaagttta tggatctatg ccaagttaaa gacgtacgtg cttggtgtcc 3180 acgcgccccg cgaatggccc cttacaagta cattaggaac ccagtgtttg agacccagga 3240 cagaattgta ccaaacagga acaacataac cacgactggg gcctttggtc agcagagtgg 3300 agccatttat gtgggcaatt acaaaattat gaatagacac cttgcaaccc atgaagattg 3360 ggaaaatgta gagtgggaag attacaacag agatattctt gtggctagaa ccaccgccca 3420 tggtgctgac aagcttgcca gatgtcactg caacaccgga gtatattact gtaagtccag 3480 gaacaagcac tacccagtaa cttccagggt ccaggcatcg attgggtcga ggctagtcag 3540 tactacccag ctagatacca gacccatatg ctccttgcct tcgggaatct cggaaccagg 3600 tgactgtggt ggtatcctca ggtgccagca tggagtgatc ggtattgtga ctgctggggg 3660 ccagggagtg gttggttttg ctgatgtgcg cgacctcttc tgggttgagc atgaagcaat 3720 ggaacaaggc cttactgatt acattcagca acttggaaac agttttggtc agggttttac 3780 agcagaaatt accaattatg ccagtcaact ttcagagatg ttaattggcg ctgacggtat 3840 ggtggagagg tgcctgcaaa cctttgtgaa agtgatctca gcggttgtaa ttgccaccag 3900 gtctcaaggt gatgttccta ctatacttgc aacccttgct ctcatcggat gcgatggtag 3960 tccctggagg tggcttaaac gtcagttttg tggaatcttt aaaatcccct atgtggagaa 4020 gcagggggac gattggctca aaaagtttac ctcctatgtc aatgccttta agggcctgga 4080 ctgggttgca gagaagataa tgaaatttat tgactggatg aagaacaagt tgatcccaca 4140 agcgagagaa aggcaagagt ttaccaccaa tttaaagact ttaccattac tggaagcgca 4200 ggtcgcaact ttggaacact cctgcccaac cactgaacaa caggagacca tctttggaaa 4260 cattcagtac ctagctcacc actgcaggag atatgcccca ctttatgcag ctgaagccag 4320 aagggtctat gccttagaaa agagaatttt aggatacata cagttcaaga gcaagcaacg 4380 gattgagcct gtatgtctcc tgattcacgg cacagctggc actggaaaat cacttgctac 4440 atccataatt ggaagaaagc tagcagaata tgagcactca gaagtttatg cgattcctcc 4500 agacagtgac cattttgacg gataccagca gcaggccgtg gtagttatgg atgatctcaa 4560 ccagaacccg gatgggaaag atatggttgc tttttgtcaa atggtctcca ccgtgcctta 4620 ccatgtacct atggctgcca ttgaagagaa gggaatgctc tttaccagct cctatgtttt 4680 ggcttccact aatagtggat ccattcaccc acccacagtt tcaaactcta aggctttatc 4740 caggaggttt gcatttgatg tagatattga agtgtcagaa cactacaaaa cacataatgg 4800 tactcttgat gttgttaacg ctactcagag atgtgaagac tgttgtccag caaatttcaa 4860 gacatgcatg cctctgattt gcggtgaggc gtaccaactc gttgaccgcc gcaatgggat 4920 gcgttactcc attgatacca tgatctcagc gatgagagcg gaatggaaga ggagaaatca 4980 ggttgggctc tgttatgtaa gactctttca gggacctccc caatttaagc cgctcaagat 5040 ttcagtggac ccagagatac cagctccccc agccattgct gatttgttag ccagtgtgga 5100 ttctgaggaa gttagagaat actgtaaaaa gaagggttgg atcgtggaag tgccagtaac 5160 agcaacaacc ctagaaagga atgtcagcat cgccaccaca atcctatcta gcttagtgct 5220 tttgacttca gtaattacct tagtctacct tgtttacaga ctctttgcag ggtaccaagg 5280 accatacaca ggattgccca atgctaaacc caagccacca gtacttaggg aggtgagggc 5340 tcaaggtccc ttgatggatt ttggcgttgg aatgatgaag aagaacatcg tcaccgtgag 5400 aactggagct ggggaattta caggtcttgg agtacatgat catgttctcg tccttccaaa 5460 acactcacac ccagcggaga tagttgtggt tgatggaaag gagacgccag ttgaggatgc 5520 atacaacctt actgatgaac aaggggtatc attagagctc acacttgtca ccctcaaaag 5580 aaatgagaaa tttagagaca tcagagctat gattccggag aacccgtgtg gaactaatga 5640 ggcagttgtt tgtgtgaata ccagcaattt tccaaatgca tttttgccag ttggcaaagt 5700 ggagtattat ggatatctta acctagcagg aagtccaact caccgaacca tgatgtacaa 5760 cttcccaact aaagcgggac agtgtggtgg agtggttctt tctacaggga aagtgctagg 5820 tatccacatt gggggaaacg gtgcacaagg attctgtgct gccttgaaaa gatcgtactt 5880 cactaagcca caaggcaaga ttgattgggt tgaaccctct aagaaacatg ggtttccagt 5940 gattaatgca ccatccaaaa ccaaacttga gcccagtgtt ttctttgatg tgtttgaggg 6000 agtcaaagaa ccagctgctc ttcatccaaa ggaccccagg cttgaggtta acttggaaga 6060 agcactcttt tccaaataca ctggtaacgt agacattgag atgccagagg aaatgaaaga 6120 ggcggtggat cattatgcta atcagctttt ggcactagac ataccaactg agccacttag 6180 catggaggaa gccatttatg gcacggaagg ccttgaagct ctggatttaa caacaagtgc 6240 tggataccct tatgttacca tggggataaa gaagagagat attctaaaca aagaaaccag 6300 agatgtgaag aagatgcaag agtgcattga caagtatgga ttgaacctcc ctatggtcac 6360 atacataaag gatgaactta gatccaagga gaaagtgaaa aagggaaaga gtagactgat 6420 tgaagcatcc agtttaaatg attctgtagc catgaggtgt tattttggca atttgtacaa 6480 ggctttccac caaaacccag gcaccctaac tggatgcgct gttggatgtg acccagatac 6540 cttttggagc aagattccag taatgatgga tggtgagttg tttggttttg attacaccgc 6600 ttatgatgcc agcttgtctc cactcatgtt tcaggctctt cagatggttt tggaaaagat 6660 tggattcgga gagggaaagc actttattga taacctgtgc tattcgcatc acctttttag 6720 agacaagtat tattttgtta agggaggaat gccatctggt tgctctggga ccagcatttt 6780 taactcaatg ataaacaaca tcattatcag gacagttgta cttcagacct acaaggggat 6840 tgaattagat caactgaaaa ttatagcgta tggggacgat gtcatcgcca gttacccata 6900 cagaattgac ccagctgaat tggccaaagc tggggcaaaa ctaggtcttc acatgactcc 6960 tccagacaag tcggaaacct atgtagatct agactggacg aatgttacat ttttaaaaag 7020 aaactttgtg ccagatgaga aatacccatt tcttgtgcat ccggttatgc ccatgaaaga 7080 gatttacgaa tctatcaggt ggaccagaga tgcacgcaac acacaagatc atgtgcgttc 7140 tctgtgcctg cttgcatggc ataatggcag aaaagagtac gaggagtttt gccgcaagat 7200 cagatcagta ccagttggca gagctcttca cttaccatca tactcttcac tgctgcgaga 7260 gtggtatgag aagttttaaa ttacagttca attgattatc cggattggcc taaacttcaa 7320 ttggatacaa tacacccacc ggatggggtg t 7351 //