ID Y13938; SV 1; linear; genomic RNA; STD; VRL; 3037 BP. XX AC Y13938; XX DT 10-JUL-1997 (Rel. 52, Created) DT 03-JUN-2000 (Rel. 63, Last updated, Version 3) XX DE Strawberry mild yellow edge-associated potexvirus mRNA for coat protein, DE partial replicase and ORF2, ORF3, ORF4 XX KW coat protein; CP gene; ORF2; ORF3; ORF4; rep gene; replicase; KW triple gene block. XX OS Strawberry mild yellow edge virus OC Viruses; Riboviria; Tymovirales; Alphaflexiviridae; Potexvirus. XX RN [1] RA Lamprecht S., Jelkmann W.; RT "Use of an in vivo infectious cDNA clone of strawberry mild yellow edge RT associated potexvirus to study the etiology of the disease"; RL Acta Hortic. 0:0(0). XX RN [2] RP 1-3037 RA Jelkmann W.; RT ; RL Submitted (20-JUN-1997) to the INSDC. RL W. Jelkmann, Federal Biological Research Centre for Agriculture and RL Forestry, Inst. for Plant Protection in Fruit Crops, Schwabenheimer Str. RL 101, D-69221 Dossenhaim, FRG XX DR MD5; feec1cb5a9dfc797de940fac25460c6a. XX CC Related sequence: D01227 XX FH Key Location/Qualifiers FH FT source 1..3037 FT /organism="Strawberry mild yellow edge virus" FT /isolate="D-74" FT /mol_type="genomic RNA" FT /db_xref="taxon:12187" FT CDS <1..1117 FT /codon_start=2 FT /gene="rep" FT /product="replicase" FT /db_xref="GOA:O41276" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:O41276" FT /protein_id="CAA74273.1" FT /translation="PDNEAEFALKKDIGDLLFINYHRAMKLPKNPIPFDRDLWQSCKNE FT VQKTYLSKDISSIVNGVARQDPDFPINEIKLFLKSQWVKKVDKLGMVVKPGQTIASFAQ FT APVMLYGTMARYMRRMREIHQPSNIFINCEKTPADLDEWAKANWNFEGLAHSNDFTAFD FT QSQDGAMLQFEVIKAKFHNVPSDIINSYVELKTNAKVFLGVLKIMRLSGEGPTFDANTE FT CSIAYHHTKYWVDPDVAQVYAGDDSAQDRTPVPRPSFNKIKDRLGLVSKPLTHRQVPGD FT YATFCGWIITPKGVIKDPLKLYASLQLAIRRGKSHEVALSYAHDAGLAYRLGDDLHSVL FT TFDEAHAHQCTVRDLVKLNKVDVLRPIWALD" FT CDS 1167..1856 FT /note="ORF2" FT /note="part of triple gene block" FT /note="pos 1167..1169 codes for Ile, which is a putative FT start codon for ORF2" FT /note="translation of ORF2 of the triple gene block is FT known in both potexviruses and carlaviruses" FT /db_xref="GOA:O41277" FT /db_xref="InterPro:IPR027351" FT /db_xref="UniProtKB/TrEMBL:O41277" FT /protein_id="CAA74274.1" FT /translation="IVEYTKRLLLERGFERTNRPITGPIVVHAVAGAGKSSLINTVSLT FT FQLICWTTLPEEKASFNCLHLRHLDGPAFPGAFIDEYQLADTDLSEAAFLFGDPLQYPG FT PAAQVPHFVKFFSHRCGLNSRSLIRELGIAFEASKLDSVQHLDPCSSDPEGTILAFEPE FT VQAALASHSLEFLCLDEFRGKQWPVCTLYVSTKHLCDLDRPSVYVALTRHYERFLIMSF FT DAADPSA" FT CDS 1834..2160 FT /note="ORF3" FT /note="part of triple gene block" FT /db_xref="GOA:O41278" FT /db_xref="InterPro:IPR001896" FT /db_xref="UniProtKB/TrEMBL:O41278" FT /protein_id="CAA74275.1" FT /translation="MPLTPPPDHSITYRILAVGLCSCCAIYAATRSTLPHTGDNLHSLP FT YGGKYSDGTKSICYSGPGPTPDIPTHLPALLVLVLVIAIYASSRLDFSVNYRCSCRVHN FT RPGQ" FT CDS 2087..2314 FT /note="ORF4" FT /note="part of triple gene block" FT /db_xref="GOA:O41279" FT /db_xref="InterPro:IPR003411" FT /db_xref="UniProtKB/TrEMBL:O41279" FT /protein_id="CAA74276.1" FT /translation="MRALDLTLALITAAVVGYTIALVSNSGCYVHFDGRSATTTCPPGP FT WVESIANGLYTAGLARPHPESECERRQSSW" FT CDS 2184..2912 FT /gene="CP" FT /product="coat protein" FT /db_xref="GOA:O41280" FT /db_xref="InterPro:IPR000052" FT /db_xref="UniProtKB/TrEMBL:O41280" FT /protein_id="CAA74277.1" FT /translation="MGDQPRPPAPPAPGSNPLPMGSTPPVLPGRTPNPNVNVANQVGDP FT FRVLTPEELAAPIAAASNKVATREQIIQIVADLNALGFVGDPALGLFDLAFHCYDIGSS FT PSAQPVGASPFGCSRMQVAAVVRNHCTVRQLCMFYAPSVWNKAVKDNRPPGNWANLQFT FT PETKFAAFDFFDGVLNPASQQVPLWRQPTPQEIYASATHKDVATYRAASKGHERISNST FT LLTKGASRSTPPALMPGPDA" XX SQ Sequence 3037 BP; 688 A; 897 C; 707 G; 745 T; 0 other; accggacaat gaagcggaat tcgctctcaa gaaagacatc ggggacctgc tcttcatcaa 60 ttaccaccgc gccatgaaac tgccaaagaa ccctatccct ttcgacaggg acttgtggca 120 gtcgtgcaag aatgaggtcc aaaagaccta tctatccaag gacatcagct ccattgtcaa 180 cggtgtcgcc aggcaagacc cagacttccc gattaatgag atcaaactct ttctgaaaag 240 tcaatgggtt aagaaagtgg ataagcttgg catggtagtg aagccaggtc aaaccattgc 300 ctcttttgct caagcccccg tgatgctgta cggcactatg gcacgctaca tgaggcgcat 360 gcgggagatc caccagccct ccaatatctt catcaactgt gagaagactc ccgccgacct 420 ggatgaatgg gccaaagcaa actggaattt tgaaggcctc gcccattcca acgacttcac 480 ggctttcgac caatctcaag atggtgccat gctgcagttc gaggtcatca aagccaagtt 540 ccacaatgtc ccaagcgaca ttatcaacag ctacgtggag ctgaagacca atgccaaggt 600 tttcttgggc gtgctcaaaa tcatgagact gtccggagag gggcctactt tcgatgccaa 660 cacagagtgt tcaattgcct accaccacac caaatactgg gttgaccccg atgtggcaca 720 ggtgtacgca ggcgatgact ctgcacagga taggacccca gtcccgaggc ccagcttcaa 780 caagatcaag gatcgcctcg gactggtctc taagcctctc acccaccgac aggtacccgg 840 ggactatgcc accttttgcg gctggatcat cactccgaaa ggggtaatca aagatccact 900 taagctctat gcttccttgc agttggccat ccgccgcgga aagtcccatg aggtggctct 960 gtcctacgcc catgacgcag gcctcgctta tcgcctcggc gacgacctgc actctgtgtt 1020 gaccttcgat gaggcccatg ctcaccagtg tactgttaga gacctggtga agctaaataa 1080 agtagacgtg ttaaggccca tttgggccct agattagggg ttaagttacc attctctcga 1140 agttcaaact ggagcgtccc aatacaatcg ttgagtacac caagcgtctg ctcttggaac 1200 gcggctttga gagaactaat cgtcctatca ctggccctat tgttgtacat gctgttgccg 1260 gtgccgggaa gtctagttta attaacactg tgtccctcac tttccagctc atctgttgga 1320 ccacgttgcc agaggagaaa gcctctttca actgccttca tctccgccat cttgacggac 1380 ccgccttccc gggagccttc atagacgagt atcagcttgc tgacaccgac ctatcggaag 1440 ctgcgtttct cttcggagac ccgctacagt acccgggacc tgctgcccaa gttccgcact 1500 tcgtgaagtt cttctcccac cgctgtgggc tgaactcgcg ttcgctaatt cgcgagctag 1560 gcatagcctt tgaagccagt aagctagatt cagtgcaaca cctggacccc tgctcctctg 1620 atcctgaagg taccattctc gcttttgagc ctgaggtaca agctgctctt gcgagccact 1680 ccttggaatt cctctgttta gacgaatttc gaggcaagca gtggccggtt tgcacattgt 1740 acgtgtccac taaacatctc tgtgacttag acagaccctc tgtctatgtc gcattaacaa 1800 gacactacga gcgcttcttg atcatgagtt tcgatgccgc tgacccctcc gcctgaccat 1860 agcataacct ataggatttt agccgttggc ctctgctctt gctgcgccat ttacgcggcc 1920 actagatcta ccctgccaca caccggtgac aacctgcatt cgctgcccta cggaggaaag 1980 tattccgacg ggaccaagag catctgctac tcgggccctg gacctacccc tgacatccct 2040 acacatctgc ctgctttgct agtcttggtc ttagtgatcg caatctatgc gagctctaga 2100 cttgacttta gcgttaatta ccgctgcagt tgtagggtac acaatcgccc tggtcagtaa 2160 ttccggttgt tacgtacatt tcgatgggag atcagccacg accacctgcc cccccggccc 2220 ctgggtcgaa tccattgcca atgggctcta caccgccggt cttgcccggc cgcaccccga 2280 atccgaatgt gaacgtcgcc aatcaagttg gtgacccttt ccgggtgctc actcctgagg 2340 aacttgctgc tccgatcgct gctgccagta ataaggtggc cactcgtgag caaataatcc 2400 aaattgtcgc tgatctgaac gccctgggct ttgtcgggga tcctgctctg ggtctcttcg 2460 acttagcctt ccactgctac gacattggtt cctcgccctc ggcacaacct gttggcgctt 2520 ccccttttgg ctgctcgcgc atgcaagttg ccgccgttgt ccgaaatcat tgcaccgttc 2580 gccagctctg tatgttctac gccccaagcg tttggaacaa agcagttaag gacaatcgtc 2640 ctcctggcaa ttgggccaat ctccagttca caccggagac caaatttgca gcctttgatt 2700 tcttcgatgg tgtgctcaat ccagccagcc aacaggtccc gctgtggcgc cagcccacac 2760 cgcaagagat ttatgcctca gccacccata aggatgtagc tacttatcgt gcagccagta 2820 agggacatga acgcatttcc aattccacgc tcctgactaa aggagctagt agatccacgc 2880 cgcctgcgct tatgccgggc cccgatgctt aacacccgtg gattaggctt aaaatgggag 2940 tttcttctca cttcttctac ccagctccaa tgagtgccat gaagtgaata tagtacaact 3000 taaccgtact agtataggtt tgtttttctt tttcctt 3037 //