ID Y10974; SV 1; linear; genomic RNA; STD; VRL; 7262 BP. XX AC Y10974; XX DT 02-DEC-1997 (Rel. 53, Created) DT 18-APR-2005 (Rel. 83, Last updated, Version 2) XX DE Barley mild mosaic virus RNA1, isolate UK-M XX KW RNA1 gene; RNA1 polyprotein. XX OS Barley mild mosaic virus OC Viruses; Riboviria; Potyviridae; Bymovirus. XX RN [1] RA Peerenboom E., Cartwright E.J., Foulds I., Adams M.J., Stratford R., RA Rosner A., Steinbiss H.H., Antoniw J.F.; RT "Complete RNA1 sequences of two UK isolates of barley mild mosaic virus: a RT wild type fugally transmissible isolate and a non-fungally transmissible RT derivative"; RL Unpublished. XX RN [2] RP 1-7262 RA Antoniw J.F.; RT ; RL Submitted (03-FEB-1997) to the INSDC. RL J.F. Antoniw, IACR-ROTHAMPSTED, Crop and Disease Management Department, RL Harpenden, Herts, AL5 2JQ, UK XX DR MD5; 95aed0c82372bf322cfe67e210744cc3. XX CC Related sequence X84802 XX FH Key Location/Qualifiers FH FT source 1..7262 FT /organism="Barley mild mosaic virus" FT /host="barley" FT /lab_host="barley" FT /strain="common" FT /isolate="UK-M" FT /mol_type="genomic RNA" FT /db_xref="taxon:12466" FT 5'UTR <1..148 FT CDS 149..6925 FT /gene="RNA1" FT /product="RNA1 polyprotein" FT /db_xref="GOA:O93128" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR001592" FT /db_xref="InterPro:IPR001650" FT /db_xref="InterPro:IPR001730" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR013648" FT /db_xref="InterPro:IPR014001" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:O93128" FT /protein_id="CAA71870.1" FT /translation="MEEFIPEVFYQNQVQSLKKILKSWKRDTSIYAYLAREQEVLAFLV FT LSPAHIAKLNKLLTEESARCALLAQNCETIEALAVVRQALQGVTLHFGDNGMEKGWLHM FT MKALDACLDESFSENAAALKKSIQAVGHKLIAAKNRIESCERSVNHLTTFQFAREYGLS FT TTYFEKLSNFGGHIRSFVWSSDSGEIFPKLKRSSRTRRISTFTSYYWGEFWCNCIWFLC FT CCWSPARWCFNSAVFIWSLCGVLNLSMIVLQFALKRHFGRYYFRYIMSGVLAICAVCCV FT HLKNRKGPILQASQKDKRFIGILAFCITVIYMFDVDLADSLSNNLHKISRLVNLFLDDN FT RGFATPAFDNLTDFTTILQSGTSSDDLKIVQDTLAVVLQVDEEDATQDDAIYDSDGLQT FT FKQWVSHNQLAGMQLARPLQYPCSNTYGLTADNVAELATSMAQEAKQWSQVVGHTGSGK FT STRLPTAYANCLKGLAGRKKNVLVCEPTRAATVNVTSGISQNFGRLVYGRHEGWSNLGD FT KTIQVMTYGSALAAWKVDNKFLSQFDAVFLDESHLITTHALVFESICQEVTNVRKFYVS FT ATPRDGKKCPEAVRRYEIKTVKTECSSVDTFVRSQEKENTLYVLNHDTVLVFLAGKAEC FT DRAASNWNKLYSTNMYAYSLTGDNFTIAYEKIVTRMLTERTIVFCTNILETGVTLNVDC FT VVDFGFTMRPELDLVDKSLTLMRRRVTENERAQRIGRAGRLRTGYAICIGNPETRHDLV FT PPETLYEAALLSFVHGVQFYINEHFENAWIEGVTKSQASVMTQFKLSPFLMRDIVRDDG FT AIPLSLHKILKDYTHRNTDLIGTKLSVMSHIYNSWPLYRTVHQSISRGDSNVPQTLRYA FT RVPFNVSTAHDFPWEDFAQACLEFQPRVLQVFSDNSSTSRIINLQIGKMHIINSMEEVK FT INIHSYQRSAENLRSVKDSFESSIFRTKLLRGNPTGKITKRIETLLDNVRVLQQVHAKL FT EMIAYSGGEKVNMDKKSVDELNEIVELQSKNSLTAEELARILHLTKPTSTFFNLFAERG FT RQMLVTLLVMVAASLMYLVFWVSPRKQDDITIEGKGRAYNRDKRMGYDSYEEDEVRNKI FT NKKFKERSTRFSNDSKPETNSKYRNLKQEFVNFYDLKTDANVLQAVFTAMDGAVLLQTE FT SPMADIGRVNKLLQDHFGDSESRAVHEGLNTMVKCHLTMKDGRQFELDMEQHDPEYVAK FT LGGEVGFRMNRDDLRQVGATRYINPRAQTSAATLEGMTMKPMSSFTIDSAKMVGFIKTA FT KDTLNCILYGDWIIAPAHIQQGEGDITFIFQHIQFTTTTERLASYGIRQFKGLDLVVIR FT RPQQIRAVKKDMRASILDTPTEIQMLYLSVKGGKYQVSTSAVCFPHYNNRWGHVISTAE FT GMCGCIVFDPTTNHIVGIHVSYNDTRRRNEFQAFTSDVLTTINAPGHEIPFSPWVFDWK FT FCGYTTKPRNMQSAPSTLERLNINATGFGFKLNAQEIKPAMLRSTESFSREFPNTQFKL FT IGEVKKGLIDKHTITGENPYFLEFLNTFKPYQWVQAFMDEYAPSILAYDAYFKDLKKYD FT RPPHAKAFCQNTLTKAKNKMINILEEAGMGRTLVRTTEQVLLDMAWTTSGGPLYHGKKI FT DIVQHLSDDELVQFSEACQQALITGTLDGVWNGSLKAELRSSQKILERKTRVFTAAPIT FT SLIAMKYYVDDFNKQFYKTHLKAPHTVGINKFNRGWQNLYEKLNKPGWTHGSGDGSRFD FT SSIDGFPFDVIKDIRKHFMDAEHHKELDTIYEEIVNTKICLANGLIIQKNCGNNSGQPS FT TVVDNTLALMTAFLYAYARLTGDHAFELMDENFVFVCNGDDNKFAMSPSFMTKFGCDFS FT PFLSELGLTYEFDEATEDICENPYMSLTMVRTSFGIGFSLSIERIVAILQWSRAGGVLH FT AYLSGIAALFESFNTPKLFNLVHTYLLWLITEHEEELFSMMELKDMFMPLPTKEQIALL FT HYVGTEPIVEDTFLQAGHEEPDPIVPPASDTDLTNMAAAPPDNKRSRAVIPRGTSDWSM FT PEPTMRTLGFKSKIKIETLADVPEGYMNTFASVATESQRRKWEEATRGDFGITDDEKWE FT KLLIAACIYFADNGTSPNFDEELTMEVNSGLNSIKEYPVRPFVVRAKKISTLRRIFRCY FT SIETKLMFVKLRRVPHWAIKHGCLDEIVFDFMIPDQFTSRTALETLKQTKLAAIGVGTS FT NSLLTSEQTNMRTTETRRRNDYDGHEALLR" FT mat_peptide 149..1024 FT /gene="p3" FT mat_peptide 1025..1225 FT /gene="6k1" FT mat_peptide 1226..3199 FT /gene="CI" FT /product="helicase" FT mat_peptide 3200..3391 FT /gene="6k2" FT mat_peptide 3392..3928 FT /gene="NIa-VPg" FT mat_peptide 3929..4567 FT /gene="NIa" FT /product="protease" FT mat_peptide 4568..6169 FT /gene="NIb" FT /product="replicase" FT mat_peptide 6170..6922 FT /gene="CP" FT /product="coat protein" FT 3'UTR 6926..>7262 FT polyA_site 7262 XX SQ Sequence 7262 BP; 2059 A; 1889 C; 1605 G; 1705 T; 4 other; aaaaataaaa ctycamtmca acccaataca aacaacgaac aacaaacaac gaatttgcaa 60 cttaccacag caatatcgac cgctagtaac agtttaacca aactcagcaa caaatcatcc 120 ttcgaccaaa cgaactctga ccatcgagat ggaggagttc attcctgaag tgttctacca 180 gaaccaggtt cagagtctta agaaaattct taaatcctgg aaacgcgaca cttctattta 240 cgcgtatctt gctcgcgagc aagaggtcct agccttcctt gtactgagtc ccgcacacat 300 tgccaaattg aacaaactac tcactgagga gtctgcacga tgtgccctgc ttgcccagaa 360 ctgtgaaacc atcgaagctc tggccgttgt tcggcaagcc ctgcagggtg tcacgctaca 420 ctttggtgat aatggcatgg agaaaggctg gttgcatatg atgaaagcac ttgatgcatg 480 tcttgacgaa agcttcagcg agaacgccgc cgcactcaag aaaagcattc aggcggttgg 540 tcacaagctc atcgcagcaa aaaaccgcat cgaaagctgc gagcgatctg tgaatcacct 600 tacaacgttt caatttgctc gcgaatatgg cttaagtact acatacttcg aaaaattatc 660 caatttcggt gggcatattc gaagttttgt gtggtccagc gactcaggag aaattttccc 720 aaaactaaaa agatcatcac gtacgaggcg catctcgaca ttcacgagct actactgggg 780 tgagttctgg tgcaactgca tctggttcct ctgctgctgt tggtctcccg cgcgctggtg 840 ttttaattct gcagttttca tatggagtct atgtggcgtt ttaaacttat ctatgattgt 900 tctacagttt gctcttaagc gtcattttgg tagatactat tttcgataca taatgtctgg 960 tgtcctagct atttgcgccg tgtgttgtgt tcatcttaaa aacagaaaag ggcctatatt 1020 gcaagcctcc caaaaagata agcgtttcat cggaatttta gctttctgca ttactgttat 1080 atacatgttt gatgttgatc tagccgactc acttagcaat aatcttcaca agatctctcg 1140 ccttgtgaat cttttccttg acgataaccg cggattcgca acacccgctt tcgacaatct 1200 aacggacttc acaacaattc ttcaaagtgg aacatcaagt gacgacctaa agattgtcca 1260 ggatacgttg gctgtggttt tacaagtcga cgaagaggac gcaactcagg atgacgcaat 1320 atatgattcc gatggacttc aaactttcaa gcaatgggtc tctcataacc aactagccgg 1380 aatgcagctt gcacgcccgt tacaataccc gtgctcgaac acctatggcc tgaccgcaga 1440 taacgtcgca gaactagcaa ctagcatggc acaggaggca aagcagtggt cacaagttgt 1500 tggacacact ggttccggga agtccacacg actaccaact gcatacgcca actgtttgaa 1560 aggcttagct gggcgaaaga aaaacgttct cgtttgtgaa cccactagag ctgcaaccgt 1620 caatgtaacc agcggcattt cacagaattt tggtaggctt gtttacggac ggcatgaagg 1680 ctggagtaac cttggcgaca aaacaataca agtcatgaca tatggttctg cactcgcagc 1740 gtggaaagtc gacaacaaat tcctaagcca gtttgacgca gtgtttctcg acgaatctca 1800 cctcatcacc acgcacgccc ttgtctttga gagcatctgc caggaggtta caaacgtccg 1860 caagttctat gtgtcagcca caccccgcga tggcaagaag tgtccagaag ccgtgcgtag 1920 gtatgaaatc aagactgtga aaaccgagtg cagcagcgtc gacactttcg ttcgaagcca 1980 ggagaaggaa aacacgcttt acgttctcaa tcacgacacc gtgctcgttt ttctcgctgg 2040 gaaggctgag tgcgatagag cagcaagcaa ctggaacaag ctgtactcaa ccaacatgta 2100 cgcgtactcc ctaacaggtg acaattttac aatcgcatat gagaaaattg tcacacgcat 2160 gctaactgag cgcaccatcg tattctgcac aaatatcctg gaaaccggtg tcaccctcaa 2220 cgtggactgc gttgttgact ttggattcac catgcgtcct gaacttgatc ttgttgacaa 2280 atcgctaacc ttgatgcgac gccgagtcac cgagaacgag cgtgcacaac gcatcgggcg 2340 tgcaggaagg cttagaacag ggtacgcaat ctgcatcggc aatcccgaaa cgcgccacga 2400 tctggtgcca ccagaaaccc tctacgaggc agcccttctt agcttcgttc acggcgtgca 2460 attctacatc aatgagcact tcgagaacgc ctggattgag ggcgtcacaa agtctcaagc 2520 ctctgtgatg acgcagttta agctttcccc cttcctcatg cgtgacattg ttcgtgatga 2580 cggtgcaata ccactatcac tccacaagat actcaaggac tacacgcacc gcaacactga 2640 tctgatagga acaaaactct ccgtcatgtc gcatatctac aactcgtggc ctctctaccg 2700 gacagtgcac caatccatct ctcgtggaga ttctaatgtt ccgcaaacgc tcagatacgc 2760 acgcgttcct ttcaacgtca gcactgccca tgattttcca tgggaagatt tcgcacaggc 2820 atgccttgag ttccagccac gtgttcttca ggtcttcagt gacaacagca gcacttcgcg 2880 cataatcaac ctacagattg gcaagatgca catcatcaat tccatggaag aagtcaagat 2940 aaacatacac agctaccagc gctctgcaga aaacctacgc tcagtcaaag acagctttga 3000 gagctcgatc tttcgaacaa aactgcttcg tgggaaccca actggaaaga taaccaagcg 3060 cattgagact ctccttgata acgtgcgggt gctacaacag gtgcacgcaa aactagagat 3120 gattgcatac tcaggtggag agaaagttaa catggacaag aaatcagttg acgaactcaa 3180 tgagatcgtc gaactccaga gcaagaattc actcactgcc gaagaactag cacgcatatt 3240 gcaccttacg aagcccacct ccactttctt caatcttttt gctgaacgcg gccgacaaat 3300 gctcgtcact ctcctggtca tggttgccgc ctcgctcatg tatcttgttt tctgggtttc 3360 cccaaggaaa caagacgaca ttaccattga aggaaaaggt agagcrtaca atcgtgacaa 3420 gcgcatgggg tacgactcct acgaagagga cgaggttcgc aacaagatca acaagaagtt 3480 caaagaacgc agcacaaggt tctccaacga ttccaaaccg gaaacaaact caaaataccg 3540 gaatctgaag caagagtttg ttaatttcta tgatcttaag actgatgcaa acgtactaca 3600 agctgtgttc actgcaatgg acggagccgt tcttcttcaa accgaatcgc caatggcaga 3660 tattggccgt gtcaataaac tgctgcaaga ccactttgga gatagtgaga gccgagccgt 3720 gcatgaaggt ctcaacacca tggttaagtg ccacttaact atgaaagatg gaagacagtt 3780 tgagctcgac atggaacagc atgatcccga gtatgttgcc aaacttggag gtgaagttgg 3840 tttcagaatg aacagagatg atctacgcca agttggcgcc acacggtaca tcaacccaag 3900 agcacaaaca tccgcagcga cgctcgaagg catgaccatg aaacccatga gttctttcac 3960 cattgatagc gcaaagatgg ttggcttcat caagactgca aaagacacac tcaactgcat 4020 cctctatggt gactggatca tagctcctgc gcacatacaa cagggcgaag gggacataac 4080 attcatcttt cagcacatac agttcacgac cacaactgag cgcttagcca gctacggcat 4140 ccgacaattt aaaggccttg accttgttgt catccgacgc ccccaacaga tacgcgcggt 4200 taagaaggac atgcgcgcta gcattcttga cacacctact gagatacaga tgctatattt 4260 gtcagtaaaa ggtggcaagt accaagtgtc cacgtccgct gtgtgctttc cacactacaa 4320 caaccgatgg ggacatgtta tttcaacggc tgaaggtatg tgcggttgca ttgtatttga 4380 ccccaccact aatcacattg ttggaatcca cgtctcctac aacgacacgc gcagaagaaa 4440 cgagtttcag gctttcacga gcgacgttct gacaacgatt aatgcgcctg gacacgaaat 4500 acctttcagc ccgtgggtct ttgactggaa gttttgcggg tacacgacaa aaccacggaa 4560 catgcaaagc gcaccgagca cgcttgagag actcaacatc aacgccacag gtttcggttt 4620 caagctcaac gcacaggaga tcaaacctgc catgctacgc tccacagagt cgttctccag 4680 ggagtttcca aacacacagt tcaaacttat cggtgaagtg aagaaaggac tcatcgacaa 4740 acacacgatt acaggagaga atccctactt ccttgaattc ctgaacacat tcaaaccata 4800 tcaatgggta caggccttca tggacgagta cgcaccctcc atccttgcct atgatgcgta 4860 tttcaaggac ttgaagaaat acgataggcc accacatgca aaagctttct gccagaacac 4920 attaaccaaa gctaaaaaca agatgatcaa cattctcgaa gaggcaggca tgggaaggac 4980 cctagtacga accaccgagc aagtcttgct tgacatggcg tggactacct ctggtggacc 5040 attataccat ggtaagaaga ttgacattgt gcaacacttg tctgatgatg agcttgtgca 5100 attcagtgaa gcctgccaac aggctctcat cactggaacg ctggatggag tctggaacgg 5160 atcactcaaa gccgaactgc gctcttcgca gaagatcctt gaacggaaaa ctcgtgtttt 5220 cactgctgcc cccatcacaa gcctaatcgc aatgaaatat tacgtggatg atttcaacaa 5280 gcagttctac aaaacccacc tcaaagcacc acacacagtc ggcatcaaca agtttaaccg 5340 cggatggcag aatctctatg agaagctcaa caaacctggg tggacgcatg ggagcgggga 5400 tggctccagg ttcgatagct ctattgacgg attccctttt gacgtcatca aagacatccg 5460 gaagcacttc atggatgcag aacaccacaa ggagctagac acaatttatg aagagattgt 5520 caacacgaaa atatgtctag caaatggtct catcatccaa aagaactgtg ggaacaacag 5580 cgggcagcca agcactgttg tagacaacac acttgcactc atgactgctt tcctctacgc 5640 atacgcccgg ctcactggag accacgcctt cgaactcatg gacgaaaact ttgttttcgt 5700 ttgcaatggt gatgacaaca agttcgctat gtcacctagc ttcatgacaa agtttggatg 5760 cgacttctca ccattccttt ctgagctagg gctaacctac gaattcgacg aagccactga 5820 agacatttgc gaaaacccct acatgtcctt gacgatggtc cgcacctcgt ttgggatcgg 5880 tttctccctc tccatagagc gcatcgttgc aatcttgcaa tggagccgcg ctggcggagt 5940 cctgcatgcc tacctctctg gcattgccgc tcttttcgaa tccttcaaca cacccaagct 6000 ctttaatctc gtgcacacat acctcctctg gctcatcaca gagcacgagg aggaactctt 6060 ctctatgatg gaactcaaag acatgttcat gcccctgccc actaaggaac agatagcctt 6120 gttgcactac gtcgggactg agcccatcgt ggaggacact ttcctgcaag cagggcatga 6180 ggaaccagat cccatagttc caccagcttc cgacaccgat ctgacaaaca tggctgcagc 6240 accaccggac aacaaaaggt cacgtgccgt catcccccgt ggcactagtg attggagcat 6300 gcccgaaccc acaatgcgaa cactgggttt taagtccaag atcaaaatcg aaacacttgc 6360 tgatgtcccc gaagggtata tgaatacctt tgcgtccgtt gcaactgagt cgcaacgtag 6420 gaagtgggaa gaggccacgc gtggcgattt tggcatcacc gacgacgaga aatgggaaaa 6480 attgctcatt gctgcctgta tatactttgc agacaatggc acctcaccaa attttgatga 6540 ggaactcact atggaagtta atagcggtct caactccatc aaagagtatc ccgttcgccc 6600 tttcgtcgtc agggccaaga agatctccac actgcgcagg atcttccgct gttattccat 6660 cgaaacgaaa ctgatgttcg taaagctgag gcgcgtgccg cattgggcca taaagcacgg 6720 atgccttgat gaaatcgtct ttgatttcat gatccccgac cagttcacct ccaggactgc 6780 actggaaaca ctgaagcaga ccaagcttgc cgccattggt gttggcacaa gcaattctct 6840 tctcacctct gagcagacga acatgaggac cactgaaacc cgaaggcgca atgactacga 6900 tggtcacgag gcgcttctcc ggtagatctc tcatgcagtt tcatttcctt tcaagcagtg 6960 catttaaata cgcttttaat tacatcaagc gtcaagaatt cctcccgctt gcagcgaatc 7020 cttaaagggt ggcactttgt gttatgcaat ggaaaattca gtgacgcaat caaccatcat 7080 tggttggtga caacgcagta ctttctttct ttcacatcaa gcgaccagca catcgcccgc 7140 ttacagctaa tcctacctga gggtggcact ctgtgttatg taatggaatg tgctatctcg 7200 caaccaaccg tcattggttg atggtgcggc taacacccgc gctcttgtat accggaaagg 7260 tt 7262 //