ID Y07496; SV 1; linear; genomic RNA; STD; VRL; 5882 BP. XX AC Y07496; XX DT 31-MAR-1989 (Rel. 19, Created) DT 17-NOV-2004 (Rel. 81, Last updated, Version 6) XX DE Potato leaf roll virus genomic RNA XX KW genome; unidentified reading frame. XX OS Potato leafroll virus OC Viruses; Riboviria; Luteoviridae; Polerovirus. XX RN [1] RP 1-5882 RA Van der Wilk F.; RT ; RL Submitted (03-MAR-1989) to the INSDC. RL Van der Wilk F., Research Institute for Plant Protection, Binnenhaven 12, RL P.O.Box 9060, 6700 GW Wageningen, Netherlands. XX RN [2] RP 1-5882 RX DOI; 10.1016/0014-5793(89)80190-5. RX PUBMED; 2466700. RA Van der Wilk F., Huisman M.J., Cornelissen B.J.C., Huttinga H., RA Goldbach R.W.; RT "Nucleotide sequence and organization of potato leafroll virus genomic RT RNA"; RL FEBS Lett. 245(1-2):51-56(1989). XX DR MD5; bbaa7ae97ea53e231a19cbe7f265af55. DR EuropePMC; PMC112128; 10864632. DR EuropePMC; PMC1151940; 15956374. DR EuropePMC; PMC3728342; 23936244. DR EuropePMC; PMC4422679; 25946037. DR EuropePMC; PMC5532827; 28751389. DR RFAM; RF01079; RF_site3. DR UniProtKB/Swiss-Prot; P0C784; P6_PLRVW. DR UniProtKB/Swiss-Prot; P0C785; RAP1_PLRVW. XX CC Data kindly reviewed (03-May-1989) by Van Der Wilk F. XX FH Key Location/Qualifiers FH FT source 1..5882 FT /organism="Potato leafroll virus" FT /strain="Wageningen" FT /mol_type="genomic RNA" FT /db_xref="taxon:12045" FT CDS 70..813 FT /note="ORF 1 (AA 1-247)" FT /db_xref="GOA:P11621" FT /db_xref="InterPro:IPR006755" FT /db_xref="UniProtKB/Swiss-Prot:P11621" FT /protein_id="CAA68794.1" FT /translation="MIVLTQSGTLLFDQRFKLSKFLFVVIATGFPLLLQQASLIYGYNH FT EQIYRICRSFLYILPLLNCKRGRISTSGLQLPRHLHYECLEWGLLCGTHPAIQIVGPTI FT VIKLDDPTTAAAYRSELLRVSSSSYIQNAAGLSNGWGHDMEAFVRNAICLLELRERSIP FT QSGLRDLMGNHQHLVRSLLDACKVDHFVPLDFQHRSLMLNFARLYNQLDLQGRAKSFRA FT LTGFPVYVPSEDYLEGSFLQKELQE" FT CDS 203..2122 FT /note="ORF 2 (AA 1-639)" FT /db_xref="GOA:P11622" FT /db_xref="InterPro:IPR000382" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR018019" FT /db_xref="UniProtKB/Swiss-Prot:P11622" FT /protein_id="CAA68795.1" FT /translation="MNRFTAYAALFFIFSLCSTAKEAGFQHPAFNFRGTSTMSALSGDY FT SAAPTPLYKSWALPSSLNLTTQPPPLLTDRSYYELVQALISKMRLDCQTVGDMTWRHLS FT EMLFASWNSVKEVSLKAASVTLWAIISIWFGLYWTLARLITLFLWTFSIEALCLILLGC FT ITSLIYKGALSLSEHLPVFLFMSPLKIIWRAAFSKRNYKNEKAVEGYKGFSVPQKPPKS FT AVIELQHENGSHLGYANCIRLYSGENALVTAEHCLEGAFATSLKTGNRIPMSTFFPIFK FT SARNDISILVGPPNWEGLLSVKGAHFITADKIGKGPASFYTLEKGEWMCHSATIDGAHH FT QFVSVLCNTGPGYSGTGFWSSKNLLGVLKGFPLEEECNYNVMSVIPSIPGITSPNYVFE FT STAVKGRVFSDETVKELEREASEAVKKLARFKSLTGKNWANDYDSDEDYGLEKEAATNA FT PAEKTAQTNSAEKTAPSTSAEKTAPTNKPLNGRAAPPAKTNGNSDIPDAAISAPPMDKM FT VEQIITAMVGRINLSEIEEKIVSRVSQKALQKPKQNKRGRRGGKNKQNNLPPTSTQSIS FT GAPKKKAVPQASGSAGISPATTTPAPKEKPSGGKNSAKFIPSWRIKQQDSAGQKPDLKL FT NSKA" FT CDS <1540..3390 FT /note="ORF 3 (AA 1-616)" FT /db_xref="GOA:P11623" FT /db_xref="InterPro:IPR000382" FT /db_xref="InterPro:IPR001795" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR018019" FT /db_xref="UniProtKB/Swiss-Prot:P11623" FT /protein_id="CAA68796.1" FT /translation="GLRSGERGCNKCARRENCSNKLSREDCSINFSRENCSNKQAFKWA FT SGTARQNKRQLRHPRRRYKRTTNGQNGRTDHHSYGGENQSLGDRGEDSEQGVSESPAEA FT QTKQTRKTWREEQAKQFTSYFDAIYKWGAQEEGCPPGFRKCGNIPGYYHPRTKGETKWG FT QKLCQVHPELADKTAGFGWPKAGFEAELQSLNLQAARWLQRAESATIPGAEARKRVIEK FT TVEAYRNCITNAPLCSLKSKLDWAGFQQDIREAVQSLELDAGVGIPYIAYGLPTHRGWV FT EDHKLLPVLTQLTFDRLQKMSEASFEDMSAEELVQEGLCDPIRLFVKGEPHKQSKLDEG FT RYRLIMSVSLVDQLVARVLFQNQNKREISLWRSVPSKPGFGLSTDTQTAEFLECLQKVS FT GAPSVEELCANHKEHTRPTDCSGFDWSVAYWMLEDDMEVRNRLTFNNTQLTERLRAAWL FT KCIGNSVLCLSDGTLLAQTVPGVQKSGSYNTSSSNSRIRVMAAYHCGADWAMAMGDDAL FT EAPNSDLEEYKTLGFKVEVGRELEFCSHIFRNPTLAVPVNTNKMLYKLIHGYNPECGNP FT EVIQNYLAAVFSVLQELRHDRELVAKLHQWLVPSATTKEH" FT CDS 3588..4214 FT /note="ORF 4 (AA 1-208)" FT /db_xref="GOA:P11624" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/Swiss-Prot:P11624" FT /protein_id="CAA68797.1" FT /translation="MSTVVVKGNVNGGVQQPRRRRRQSLRRRANRVQPVVMVTAPGQPR FT RRRRRRGGNRRSRRTGVPRGRGSSETFVFTKDNLMGNSQGSFTFGPSLSDCPAFKDGIL FT KAYHEYKITSILLQFVSEASSTSSGSIAYELDPHCKVSSLQSYVNQFQIPQGGAKTYQA FT RMINGVEWHDSSEDQCRILWKGNGKSSDTAGSFRVTIRVALQNPK" FT CDS 3613..4083 FT /note="ORF 5 (AA 1-156)" FT /db_xref="GOA:P11625" FT /db_xref="InterPro:IPR001964" FT /db_xref="UniProtKB/Swiss-Prot:P11625" FT /protein_id="CAA68798.1" FT /translation="MSMAVYNNQEGEEGNPFAGALTEFSQWLWSRPLGNPGAEDAEEEA FT IAAQEELEFPEDEAQARHSCLQRTTSWATPKEVSPSGRVYQTVRHSRMEYSRPTMSIRS FT QASYFSSSARPLPPPPVPSLMSWTPIAKYHPSSPTSTSSKFLRAAPKLIKRG" FT CDS <4215..5741 FT /note="ORF 6 (AA 1-560)" FT /db_xref="GOA:P11626" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR002929" FT /db_xref="UniProtKB/Swiss-Prot:P11626" FT /protein_id="CAA68799.1" FT /translation="VDSGPEPGPSPQPTPTPTPQKHERFIAYVGIPMLTIQARESDDQI FT ILGSLGSQRMKYIEDENQNYTNVSSEYYSQSSMQAVPMYYFNVPKGQWSVDISCEGYQP FT TSSTSDPNRGRSDGMIAYSNADSDYWNVGEADGVKISKLRNDNTYRQGHPELEINSCHF FT REGQLLERDATISFHVEAPTDGRFFLVGPAIQKTAKYNYTISYGDWTDRDMELGLITVV FT LDEHLEGTGSANRVRRPPREGHTYMASPREPEGKPVGNKPRDETPIQTQERQPDQTPSD FT DVSDAGSVNSGGSTESLQLEFGANSDSTYDATVDGTDWPRIPPPRHPPEPRVSGNSRTV FT TDFSPKADLLENWDAKHFDPGYSKEDVAAATIIAHGSIQDGRSMLEKREENVKNKTSSW FT KPPLPKAVSPAIAKLRSIRKSQPLEGGTLKKDATDGVSSIGSGSLTGGTLKRKETIEER FT LLQTLTTEQRLWYENLKKTNPLAATQWLFEYQPPPQVDRNLAEKPFQGRK" XX SQ Sequence 5882 BP; 1651 A; 1487 C; 1415 G; 1329 T; 0 other; caaaagaata ccaggaggaa ttgcagcttt agcgcataaa ctctacactc attgcaaacg 60 ttatagcata tgattgtatt gacccagtct ggaaccttgc tttttgacca aagatttaaa 120 ctctcaaagt ttctcttcgt tgtcattgca acaggttttc ctcttctcct gcagcaagcg 180 agcttaattt acggctataa tcatgaacag atttaccgca tatgccgctc ttttctttat 240 attctccctt tgctcaactg caaaagaggc aggatttcaa catccggcct tcaacttccg 300 aggcacctcc actatgagtg ccttgagtgg ggattactct gcggcaccca ccccgctata 360 caaatcgtgg gccctaccat cgtcattaaa cttgacgacc caaccaccgc cgctgcttac 420 agatcggagc tactacgagt tagttcaagc tcttatatcc aaaatgcggc tggattgtca 480 aacggttggg gacatgacat ggaggcattt gtcagaaatg ctatttgcct cctggaactc 540 cgtgaaagaa gtatccctca aagcggcctc cgtgacctta tgggcaatca tcagcatttg 600 gttcggtctc tattggacgc ttgcaaggtt gatcactttg ttcctctgga ctttcagcat 660 agaagcctta tgcttaattt tgctcggttg tataaccagc ttgatctaca agggcgcgct 720 aagtctttca gagcacttac cggttttcct gtttatgtcc cctctgaaga ttatttggag 780 ggcagctttc tccaaaagga attacaagaa tgagaaggct gtggaaggat acaaagggtt 840 ttcggttcca caaaaaccgc caaagtctgc cgtaattgaa ctacaacatg aaaacggcag 900 ccatctcggg tacgcgaact gcattcgctt atacagtgga gagaacgcct tggtgacagc 960 tgaacactgt ctagaaggcg ctttcgcaac gtcgttgaaa actggaaaca ggattccgat 1020 gtcgactttc tttcccattt tcaaaagtgc ccgtaatgat atctccatac tagtaggtcc 1080 acccaactgg gaaggtctac tatcagtcaa aggagctcat ttcatcacag ctgacaaaat 1140 cggcaaaggt cctgcctctt tctacactct tgagaaaggg gagtggatgt gccatagtgc 1200 caccatagat ggagcccatc accagttcgt gtctgtttta tgcaacactg gacccggata 1260 ttccggaaca gggttttggt cttcaaagaa tctgcttggt gtgcttaaag gcttcccact 1320 ggaagaggag tgtaactaca atgttatgtc tgttataccc tcgatcccag gaatcacttc 1380 cccaaattat gtgtttgagt cgaccgccgt aaaaggccgc gtcttctcgg atgaaactgt 1440 gaaagaacta gagcgggaag catccgaagc cgtcaagaag cttgccagat ttaaatcact 1500 taccggcaag aactgggcta atgattatga ctccgatgag gattacggtc tggagaaaga 1560 ggctgcaaca aatgcgcccg cagagaaaac tgctcaaaca aactcagcag agaagactgc 1620 tccatcaact tcagcagaga aaactgctcc aacaaacaag cctttaaatg ggcgagcggc 1680 accgcccgcc aaaacaaacg gcaactccga catccccgac gccgctataa gcgcaccacc 1740 aatggacaaa atggtcgaac agatcatcac agctatggtg gggagaatca atctctcgga 1800 gatagaggag aagatagtga gcagggtgtc tcagaaagcc ctgcagaagc ccaaacaaaa 1860 caaacgcgga agacgtggag ggaagaacaa gcaaaacaat ttacctccta cttcgacgca 1920 atctataagt ggggcgccca agaagaaggc tgtcccccag gcttcaggaa gtgcgggaat 1980 atccccggct actaccaccc ccgcaccaaa ggagaaacca agtgggggca aaaactctgc 2040 caagttcatc ccgagctggc ggataaaaca gcaggattcg gctggccaaa agccggattt 2100 gaagctgaac tccaaagcct gaatctacag gctgccaggt ggctccaacg cgcggagtcg 2160 gccactatcc ctggcgcaga agcaagaaag cgcgtgattg agaaaacagt ggaggcatac 2220 agaaattgta taactaacgc cccactgtgc tcccttaaat ccaaactgga ttgggctggc 2280 tttcaacaag atatccgtga agcagtccag tcccttgagc tagacgctgg tgtaggcatt 2340 ccctatatcg cgtatggcct ccccacacac cgaggatggg ttgaggacca taagcttctc 2400 ccagtgctca ctcagctgac ctttgaccga ctacagaaga tgtcagaggc cagctttgag 2460 gatatgagcg cagaagagct ggttcaagaa gggctctgtg atcctattag actatttgtc 2520 aaaggagagc cccacaaaca gagcaaactc gatgaaggcc gctaccgcct catcatgtct 2580 gtttccttgg tggatcaact ggtagcccgg gttctgttcc aaaatcagaa caaaagggaa 2640 atttccctgt ggaggtctgt gccttccaaa cccggttttg gcctttcaac tgacactcaa 2700 actgctgaat tcttggagtg tcttcaaaag gtgtctggag cgccatctgt ggaagaattg 2760 tgtgcaaatc acaaggagca cacgcgccca accgactgtt ccggtttcga ctggtcagtc 2820 gcgtattgga tgctggagga tgatatggag gtgagaaatc gcctgacatt taataacacc 2880 cagctcaccg agcgccttcg ggctgcctgg ttgaagtgca taggaaactc cgtcctatgc 2940 ctgtccgatg gcactttact tgcccaaact gttcccggtg tgcaaaagag cggaagttac 3000 aatacaagtt cttccaactc tagaatccgg gttatggctg cctatcactg tggcgccgac 3060 tgggcaatgg ccatggggga cgatgctctc gaagccccca actccgatct agaggagtat 3120 aaaacactag gtttcaaagt cgaggtaggt cgagaactcg aattctgttc acacatcttc 3180 agaaatccga ccctcgccgt tccggtcaac accaacaaaa tgctttacaa gttgatccat 3240 ggttataatc cggaatgtgg caatccagaa gtgattcaaa actatctggc tgcagttttc 3300 tctgtgctgc aggaactccg acacgatcgt gagctcgttg ccaagctcca ccagtggttg 3360 gttccgagtg ccaccacaaa agaacactga aggagctcac taaaactagc caagcatacg 3420 cgagttgcaa gcattggaag ttcaagcctc gttacatcaa ccggataaaa tagattttaa 3480 attcttagcg ggatttgctt taggattctc atccgcaatc ccattttcag tagccggttt 3540 atatttagtt tacctaaaga tttcctccca cgtgcgatca attgttaatg agtacggtcg 3600 tggttaaagg aaatgtcaat ggcggtgtac aacaaccaag aaggcgaaga aggcaatccc 3660 ttcgcaggcg cgctaacaga gttcagccag tggttatggt cacggcccct gggcaaccca 3720 ggcgccgaag acgcagaaga ggaggcaatc gccgctcaag aagaactgga gttccccgag 3780 gacgaggctc aagcgagaca ttcgtgttta caaaggacaa cctcatgggc aactcccaag 3840 gaagtttcac cttcgggccg agtctatcag actgtccggc attcaaggat ggaatactca 3900 aggcctacca tgagtataag atcacaagca tcttacttca gttcgtcagc gaggcctctt 3960 ccacctcctc cggttccatc gcttatgagt tggaccccca ttgcaaagta tcatccctcc 4020 agtcctacgt caaccagttc caaattcctc agggcggcgc caaaacttat caagcgcgga 4080 tgataaacgg ggtagaatgg cacgattctt ctgaggatca gtgccggata ctgtggaaag 4140 gaaatggaaa atcttcagat accgcaggat ccttcagagt caccatcagg gtggctttgc 4200 aaaaccccaa ataggtagac tccggaccag agcctggtcc aagcccacaa ccaacaccca 4260 ctccaactcc ccagaagcac gagcgattta ttgcttatgt tggcatacct atgctaacca 4320 ttcaggccag ggagagcgac gaccaaatca tattgggttc cttagggagc caaaggatga 4380 aatatataga ggacgagaac cagaactata caaatgttag ttctgagtat tactctcaat 4440 cgagcatgca agccgtccct atgtattact tcaatgtccc gaaagggcaa tggtcagtcg 4500 acatcagctg cgaagggtat caacccacta gcagcacctc ggatccaaac cggggtagga 4560 gtgacgggat gatcgcgtat tcaaacgcgg attccgatta ttggaatgtt ggtgaagcgg 4620 atggtgtaaa aatttcgaag ctacgcaacg ataacaccta ccgccaaggt cacccagaac 4680 ttgaaattaa ctcgtgtcat tttcgcgagg gccaactcct tgaacgggac gctacaatta 4740 gcttccacgt tgaagcgcct actgatgggc gattctttct cgttggtccc gctatccaga 4800 aaaccgcaaa gtataactat actatctcat acggtgactg gacggaccga gacatggaac 4860 tggggctgat caccgtggtg cttgatgaac atttagaagg cactggttcg gctaacagag 4920 tgcggcggcc cccacgggag ggccacacct atatggcctc gccgcgcgaa ccggaaggaa 4980 aaccggttgg aaataaacca agggacgaaa ccccgataca aacgcaggaa agacaacctg 5040 atcaaactcc gtctgacgac gtatccgatg ctggttcggt aaacagcggc ggctcaactg 5100 agtcgctgca attggagttc ggggcaaatt cagatagtac ctacgatgct acagtcgatg 5160 gtacagactg gcccagaatt cctccaccaa ggcacccacc tgaacctaga gtttccggca 5220 attcaagaac tgttactgac ttttctccga aagccgatct attggagaat tgggatgcca 5280 aacacttcga ccctggttat tccaaagaag atgtcgctgc tgctactatt atagcgcacg 5340 gcagtattca agatgggcga agtatgttag agaagagaga ggaaaatgtc aagaacaaaa 5400 cctcctcctg gaagcccccg ttacctaaag cggtgagccc agccatagcc aaattgcgct 5460 cgattcgcaa atcccaaccc ctcgagggag ggacccttaa gaaagacgcc actgatggtg 5520 tctcatctat tggcagtggt tctctaacag gtggcacgct taagaggaag gaaactatcg 5580 aagagcgttt actgcagacc ttaacaactg aacaaaggct gtggtacgag aatttgaaga 5640 aaactaaccc tttagctgct acccaatggc tgtttgaata tcagccacct ccccaagtgg 5700 atagaaactt agctgaaaag ccattccaag ggaggaaatg agtcgactca cgacttaaaa 5760 ctgagtgtcc gccggacatt aagcggaacg aaagccgaaa ggtgattagg ctctcaacgc 5820 ctgctagaga ccgtcgaaag acgcgactgt gtacccagga tcctcttaca gggttgtgta 5880 gt 5882 //